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BioC 3.2: CHECK report for supraHex on zin1

This page was generated on 2015-08-24 10:49:31 -0700 (Mon, 24 Aug 2015).

Package 999/1071HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
supraHex 1.7.2
Hai Fang
Snapshot Date: 2015-08-23 16:24:14 -0700 (Sun, 23 Aug 2015)
URL: https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/supraHex
Last Changed Rev: 107267 / Revision: 107696
Last Changed Date: 2015-08-08 15:18:54 -0700 (Sat, 08 Aug 2015)
zin1 Linux (Ubuntu 14.04.2 LTS) / x86_64  OK  OK [ OK ]UNNEEDED, same version exists in internal repository
perceval Mac OS X Snow Leopard (10.6.8) / x86_64  OK  OK  OK  OK UNNEEDED, same version exists in internal repository
oaxaca Mac OS X Mavericks (10.9.5) / x86_64  OK  OK  OK  OK UNNEEDED, same version exists in internal repository

Summary

Package: supraHex
Version: 1.7.2
Command: /home/biocbuild/bbs-3.2-bioc/R/bin/R CMD check --no-vignettes --timings supraHex_1.7.2.tar.gz
StartedAt: 2015-08-24 04:10:33 -0700 (Mon, 24 Aug 2015)
EndedAt: 2015-08-24 04:11:06 -0700 (Mon, 24 Aug 2015)
EllapsedTime: 33.5 seconds
RetCode: 0
Status:  OK 
CheckDir: supraHex.Rcheck
Warnings: 0

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   /home/biocbuild/bbs-3.2-bioc/R/bin/R CMD check --no-vignettes --timings supraHex_1.7.2.tar.gz
###
##############################################################################
##############################################################################


* using log directory ‘/home/biocbuild/bbs-3.2-bioc/meat/supraHex.Rcheck’
* using R version 3.2.2 (2015-08-14)
* using platform: x86_64-pc-linux-gnu (64-bit)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘supraHex/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘supraHex’ version ‘1.7.2’
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘supraHex’ can be installed ... [1s/1s] OK
* checking installed package size ... OK
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking sizes of PDF files under ‘inst/doc’ ... OK
* checking installed files from ‘inst/doc’ ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... [10s/10s] OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in ‘inst/doc’ ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE

Status: OK

supraHex.Rcheck/00install.out:

* installing *source* package ‘supraHex’ ...
** R
** data
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded
* DONE (supraHex)

supraHex.Rcheck/supraHex-Ex.timings:

nameusersystemelapsed
sBMH0.0480.0040.052
sCompReorder0.7050.0080.720
sDistance0.0930.0120.105
sDmat0.1230.0080.132
sDmatCluster0.2080.0030.212
sDmatMinima0.1290.0000.129
sHexDist0.0030.0000.003
sHexGrid0.0030.0000.004
sInitial0.0040.0000.004
sMapOverlay0.1720.0080.180
sNeighAny0.0080.0000.008
sNeighDirect0.0040.0000.004
sPipeline0.2680.0040.272
sTopology0.0170.0000.017
sTrainBatch0.0450.0000.044
sTrainSeq0.4180.0000.419
sTrainology0.0050.0000.004
sWriteData0.1670.0000.167
visColoralpha0.0050.0000.005
visColorbar0.0350.0030.039
visColormap0.0050.0000.005
visCompReorder1.0680.0201.087
visDmatCluster0.2730.0040.277
visDmatHeatmap0.1780.0000.178
visHeatmap0.0950.0000.095
visHeatmapAdv0.4260.0040.430
visHexAnimate000
visHexComp0.1080.0000.109
visHexGrid0.0980.0000.098
visHexMapping1.4480.0081.499
visHexMulComp0.6910.0070.698
visHexPattern1.7040.0201.726
visKernels0.0120.0000.012
visTreeBootstrap0.1910.0000.191
visVp0.0210.0000.025