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BioC 3.2: INSTALL report for simpleaffy on zin1

This page was generated on 2015-08-24 10:46:51 -0700 (Mon, 24 Aug 2015).

Package 950/1071HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
simpleaffy 2.45.0
Crispin Miller
Snapshot Date: 2015-08-23 16:24:14 -0700 (Sun, 23 Aug 2015)
URL: https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/simpleaffy
Last Changed Rev: 102594 / Revision: 107696
Last Changed Date: 2015-04-16 13:02:44 -0700 (Thu, 16 Apr 2015)
zin1 Linux (Ubuntu 14.04.2 LTS) / x86_64 [ OK ] OK  OK UNNEEDED, same version exists in internal repository
perceval Mac OS X Snow Leopard (10.6.8) / x86_64  OK  OK  OK  OK UNNEEDED, same version exists in internal repository
oaxaca Mac OS X Mavericks (10.9.5) / x86_64  OK  OK  OK  OK UNNEEDED, same version exists in internal repository

Summary

Package: simpleaffy
Version: 2.45.0
Command: /home/biocbuild/bbs-3.2-bioc/R/bin/R CMD INSTALL simpleaffy
StartedAt: 2015-08-23 17:06:32 -0700 (Sun, 23 Aug 2015)
EndedAt: 2015-08-23 17:06:41 -0700 (Sun, 23 Aug 2015)
EllapsedTime: 8.9 seconds
RetCode: 0
Status:  OK 

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   /home/biocbuild/bbs-3.2-bioc/R/bin/R CMD INSTALL simpleaffy
###
##############################################################################
##############################################################################


* installing to library ‘/home/biocbuild/bbs-3.2-bioc/R/library’
* installing *source* package ‘simpleaffy’ ...
** libs
gcc -std=gnu99 -I/home/biocbuild/bbs-3.2-bioc/R/include -DNDEBUG  -I/usr/local/include    -fpic  -g -O2  -Wall -c simpleaffy.c -o simpleaffy.o
simpleaffy.c: In function ‘bgmas’:
simpleaffy.c:440:5: warning: passing argument 1 of ‘REprintf’ from incompatible pointer type [enabled by default]
     if(gn >= ngrid) REprintf(stderr,"Really ouch! %d %d\n",gn,ends[gn]);
     ^
In file included from /home/biocbuild/bbs-3.2-bioc/R/include/R.h:47:0,
                 from simpleaffy.c:5:
/home/biocbuild/bbs-3.2-bioc/R/include/R_ext/Print.h:40:6: note: expected ‘const char *’ but argument is of type ‘struct _IO_FILE *’
 void REprintf(const char *, ...);
      ^
gcc -std=gnu99 -shared -L/home/biocbuild/bbs-3.2-bioc/R/lib -L/usr/local/lib -o simpleaffy.so simpleaffy.o -L/home/biocbuild/bbs-3.2-bioc/R/lib -lR
installing to /home/biocbuild/bbs-3.2-bioc/R/library/simpleaffy/libs
** R
** data
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded
* DONE (simpleaffy)