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BioC 3.2: BUILD report for metaseqR on zin1

This page was generated on 2015-08-24 10:49:48 -0700 (Mon, 24 Aug 2015).

Package 606/1071HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
metaseqR 1.9.1
Panagiotis Moulos
Snapshot Date: 2015-08-23 16:24:14 -0700 (Sun, 23 Aug 2015)
URL: https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/metaseqR
Last Changed Rev: 106835 / Revision: 107696
Last Changed Date: 2015-07-28 06:45:10 -0700 (Tue, 28 Jul 2015)
zin1 Linux (Ubuntu 14.04.2 LTS) / x86_64  NotNeeded [ ERROR ] skipped 
perceval Mac OS X Snow Leopard (10.6.8) / x86_64  NotNeeded  ERROR  skipped  skipped 
oaxaca Mac OS X Mavericks (10.9.5) / x86_64  NotNeeded  ERROR  skipped  skipped 

Summary

Package: metaseqR
Version: 1.9.1
Command: /home/biocbuild/bbs-3.2-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data metaseqR
StartedAt: 2015-08-23 20:01:12 -0700 (Sun, 23 Aug 2015)
EndedAt: 2015-08-23 20:01:51 -0700 (Sun, 23 Aug 2015)
EllapsedTime: 39.0 seconds
RetCode: 1
Status:  ERROR 
PackageFile: None
PackageFileSize: NA

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   /home/biocbuild/bbs-3.2-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data metaseqR
###
##############################################################################
##############################################################################


* checking for file ‘metaseqR/DESCRIPTION’ ... OK
* preparing ‘metaseqR’:
* checking DESCRIPTION meta-information ... OK
* installing the package to build vignettes
* creating vignettes ... ERROR
Loading required package: EDASeq
Loading required package: Biobase
Loading required package: BiocGenerics
Loading required package: parallel

Attaching package: 'BiocGenerics'

The following objects are masked from 'package:parallel':

    clusterApply, clusterApplyLB, clusterCall, clusterEvalQ,
    clusterExport, clusterMap, parApply, parCapply, parLapply,
    parLapplyLB, parRapply, parSapply, parSapplyLB

The following objects are masked from 'package:stats':

    IQR, mad, xtabs

The following objects are masked from 'package:base':

    Filter, Find, Map, Position, Reduce, anyDuplicated, append,
    as.data.frame, as.vector, cbind, colnames, do.call,
    duplicated, eval, evalq, get, grep, grepl, intersect,
    is.unsorted, lapply, mapply, match, mget, order, paste, pmax,
    pmax.int, pmin, pmin.int, rank, rbind, rep.int, rownames,
    sapply, setdiff, sort, table, tapply, union, unique, unlist,
    unsplit

Welcome to Bioconductor

    Vignettes contain introductory material; view with
    'browseVignettes()'. To cite Bioconductor, see
    'citation("Biobase")', and for packages 'citation("pkgname")'.

Loading required package: ShortRead
Loading required package: BiocParallel
Loading required package: Biostrings
Loading required package: S4Vectors
Loading required package: stats4
Loading required package: IRanges
Loading required package: XVector
Loading required package: Rsamtools
Loading required package: GenomeInfoDb
Loading required package: GenomicRanges
Loading required package: GenomicAlignments
Loading required package: SummarizedExperiment
Loading required package: DESeq
Loading required package: locfit
locfit 1.5-9.1 	 2013-03-22

Attaching package: 'locfit'

The following objects are masked from 'package:GenomicAlignments':

    left, right

Loading required package: lattice
    Welcome to 'DESeq'. For improved performance, usability and
    functionality, please consider migrating to 'DESeq2'.
Loading required package: limma

Attaching package: 'limma'

The following object is masked from 'package:DESeq':

    plotMA

The following object is masked from 'package:BiocGenerics':

    plotMA

Loading required package: qvalue
Quitting from lines 119-159 (metaseqr-pdf.Rnw) 
Error: processing vignette 'metaseqr-pdf.Rnw' failed with diagnostics:
1: Extra content at the end of the document
Execution halted