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BioC 3.2: INSTALL report for VanillaICE on moscato1

This page was generated on 2015-08-20 13:18:49 -0700 (Thu, 20 Aug 2015).

Package 1045/1069HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
VanillaICE 1.31.3
Robert Scharpf
Snapshot Date: 2015-08-19 16:24:33 -0700 (Wed, 19 Aug 2015)
URL: https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/VanillaICE
Last Changed Rev: 105266 / Revision: 107602
Last Changed Date: 2015-06-20 16:22:45 -0700 (Sat, 20 Jun 2015)
zin1 Linux (Ubuntu 14.04.2 LTS) / x86_64  OK  OK  OK UNNEEDED, same version exists in internal repository
moscato1 Windows Server 2008 R2 Enterprise SP1 (64-bit) / x64 [ OK ] OK  OK  OK UNNEEDED, same version exists in internal repository
perceval Mac OS X Snow Leopard (10.6.8) / x86_64  OK  OK  OK  OK UNNEEDED, same version exists in internal repository
oaxaca Mac OS X Mavericks (10.9.5) / x86_64  OK  OK  OK  OK UNNEEDED, same version exists in internal repository

Summary

Package: VanillaICE
Version: 1.31.3
Command: C:\cygwin\bin\curl.exe -O http://zin1/BBS/3.2/bioc/src/contrib/VanillaICE_1.31.3.tar.gz && D:\biocbld\bbs-3.2-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch VanillaICE_1.31.3.tar.gz && rm VanillaICE_1.31.3.tar.gz
StartedAt: 2015-08-19 18:36:51 -0700 (Wed, 19 Aug 2015)
EndedAt: 2015-08-19 18:41:01 -0700 (Wed, 19 Aug 2015)
EllapsedTime: 250.1 seconds
RetCode: 0
Status:  OK  

Command output

##############################################################################
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###
### Running command:
###
###   C:\cygwin\bin\curl.exe -O http://zin1/BBS/3.2/bioc/src/contrib/VanillaICE_1.31.3.tar.gz && D:\biocbld\bbs-3.2-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch VanillaICE_1.31.3.tar.gz && rm VanillaICE_1.31.3.tar.gz
###
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##############################################################################


  % Total    % Received % Xferd  Average Speed   Time    Time     Time  Current
                                 Dload  Upload   Total   Spent    Left  Speed

  0     0    0     0    0     0      0      0 --:--:-- --:--:-- --:--:--     0
100 1130k  100 1130k    0     0  33.5M      0 --:--:-- --:--:-- --:--:-- 44.1M

install for i386

* installing to library 'D:/biocbld/bbs-3.2-bioc/R/library'
* installing *source* package 'VanillaICE' ...
** libs
gcc -m32 -I"D:/biocbld/BBS-3˜1.2-B/R/include" -DNDEBUG     -I"d:/RCompile/r-compiling/local/local320/include"     -O3 -Wall  -std=gnu99 -mtune=core2 -c rinit.c -o rinit.o
gcc -m32 -I"D:/biocbld/BBS-3˜1.2-B/R/include" -DNDEBUG     -I"d:/RCompile/r-compiling/local/local320/include"     -O3 -Wall  -std=gnu99 -mtune=core2 -c viterbi.c -o viterbi.o
gcc -m32 -shared -s -static-libgcc -o VanillaICE.dll tmp.def rinit.o viterbi.o -lm -Ld:/RCompile/r-compiling/local/local320/lib/i386 -Ld:/RCompile/r-compiling/local/local320/lib -LD:/biocbld/BBS-3˜1.2-B/R/bin/i386 -lR
installing to D:/biocbld/bbs-3.2-bioc/R/library/VanillaICE/libs/i386
** R
** data
** inst
** preparing package for lazy loading
Creating a new generic function for 'distance' in package 'VanillaICE'
** help
*** installing help indices
** building package indices
** installing vignettes
   'VanillaICE.Rnw' 
   'crlmmDownstream.Rnw' 
** testing if installed package can be loaded

install for x64

* installing to library 'D:/biocbld/bbs-3.2-bioc/R/library'
* installing *source* package 'VanillaICE' ...
** libs
gcc -m64 -I"D:/biocbld/BBS-3˜1.2-B/R/include" -DNDEBUG     -I"d:/RCompile/r-compiling/local/local320/include"     -O2 -Wall  -std=gnu99 -mtune=core2 -c rinit.c -o rinit.o
gcc -m64 -I"D:/biocbld/BBS-3˜1.2-B/R/include" -DNDEBUG     -I"d:/RCompile/r-compiling/local/local320/include"     -O2 -Wall  -std=gnu99 -mtune=core2 -c viterbi.c -o viterbi.o
gcc -m64 -shared -s -static-libgcc -o VanillaICE.dll tmp.def rinit.o viterbi.o -lm -Ld:/RCompile/r-compiling/local/local320/lib/x64 -Ld:/RCompile/r-compiling/local/local320/lib -LD:/biocbld/BBS-3˜1.2-B/R/bin/x64 -lR
installing to D:/biocbld/bbs-3.2-bioc/R/library/VanillaICE/libs/x64
** testing if installed package can be loaded
* DONE (VanillaICE)