DEXSeq 1.15.10
Alejandro Reyes
| Snapshot Date: 2015-08-19 16:24:33 -0700 (Wed, 19 Aug 2015) | | URL: https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/DEXSeq | | Last Changed Rev: 106920 / Revision: 107602 | | Last Changed Date: 2015-07-30 09:03:53 -0700 (Thu, 30 Jul 2015) |
| zin1 | Linux (Ubuntu 14.04.2 LTS) / x86_64 | OK | OK | OK | |  |
| moscato1 | Windows Server 2008 R2 Enterprise SP1 (64-bit) / x64 | OK | OK | [ OK ] | OK | |
| perceval | Mac OS X Snow Leopard (10.6.8) / x86_64 | OK | OK | TIMEOUT | OK | |
| oaxaca | Mac OS X Mavericks (10.9.5) / x86_64 | OK | OK | OK | OK | |
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### Running command:
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### rm -rf DEXSeq.buildbin-libdir DEXSeq.Rcheck && mkdir DEXSeq.buildbin-libdir DEXSeq.Rcheck && D:\biocbld\bbs-3.2-bioc\R\bin\R.exe CMD INSTALL --build --merge-multiarch --library=DEXSeq.buildbin-libdir DEXSeq_1.15.10.tar.gz >DEXSeq.Rcheck\00install.out 2>&1 && cp DEXSeq.Rcheck\00install.out DEXSeq-install.out && D:\biocbld\bbs-3.2-bioc\R\bin\R.exe CMD check --library=DEXSeq.buildbin-libdir --install="check:DEXSeq-install.out" --force-multiarch --no-vignettes --timings DEXSeq_1.15.10.tar.gz
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* using log directory 'D:/biocbld/bbs-3.2-bioc/meat/DEXSeq.Rcheck'
* using R version 3.2.2 (2015-08-14)
* using platform: x86_64-w64-mingw32 (64-bit)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'DEXSeq/DESCRIPTION' ... OK
* this is package 'DEXSeq' version '1.15.10'
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'DEXSeq' can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking 'build' directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* loading checks for arch 'i386'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* loading checks for arch 'x64'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... NOTE
DEXSeqDataSet: no visible global function definition for 'DataFrame'
estimateExonFoldChanges: no visible global function definition for
'DataFrame'
show.DEXSeqResults: no visible global function definition for
'DataFrame'
show,DEXSeqResults: no visible global function definition for
'DataFrame'
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking installed files from 'inst/doc' ... OK
* checking files in 'vignettes' ... OK
* checking examples ...
** running examples for arch 'i386' ... [61s] OK
Examples with CPU or elapsed time > 5s
user system elapsed
DEXSeq 9.91 0.02 9.99
estimateExonFoldChanges 8.67 0.00 8.67
perGeneQValue 7.40 0.00 7.39
DEXSeqResults 6.79 0.00 6.79
testForDEU 6.74 0.00 6.74
methods-gr 6.30 0.02 6.32
estimateDispersions 6.01 0.00 6.01
** running examples for arch 'x64' ... [68s] OK
Examples with CPU or elapsed time > 5s
user system elapsed
estimateExonFoldChanges 10.83 0.00 10.84
DEXSeq 9.62 0.05 10.04
methods-gr 7.92 0.00 7.92
DEXSeqResults 7.89 0.00 7.89
perGeneQValue 7.10 0.00 7.10
estimateDispersions 6.97 0.01 6.99
testForDEU 5.96 0.00 5.96
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in 'inst/doc' ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE
Status: 1 NOTE
See
'D:/biocbld/bbs-3.2-bioc/meat/DEXSeq.Rcheck/00check.log'
for details.
install for i386
* installing *source* package 'DEXSeq' ...
** R
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded
install for x64
* installing *source* package 'DEXSeq' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'DEXSeq' as DEXSeq_1.15.10.zip
* DONE (DEXSeq)