Back to Workflows build report for BioC 3.19

This page was generated on 2024-10-18 16:30 -0400 (Fri, 18 Oct 2024).

HostnameOSArch (*)R versionInstalled pkgs
nebbiolo1Linux (Ubuntu 22.04.3 LTS)x86_644.4.1 (2024-06-14) -- "Race for Your Life" 4763
palomino7Windows Server 2022 Datacenterx644.4.1 (2024-06-14 ucrt) -- "Race for Your Life" 4500
merida1macOS 12.7.5 Montereyx86_644.4.1 (2024-06-14) -- "Race for Your Life" 4530
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

Package 18/30HostnameOS / ArchINSTALLBUILD
methylationArrayAnalysis 1.28.0  (landing page)
Jovana Maksimovic
Snapshot Date: 2024-10-18 12:45 -0400 (Fri, 18 Oct 2024)
git_url: https://git.bioconductor.org/packages/methylationArrayAnalysis
git_branch: RELEASE_3_19
git_last_commit: c841b14
git_last_commit_date: 2024-04-30 10:13:19 -0400 (Tue, 30 Apr 2024)
nebbiolo1Linux (Ubuntu 22.04.3 LTS) / x86_64  OK    ERROR  
palomino7Windows Server 2022 Datacenter / x64  OK    ERROR  
merida1macOS 12.7.5 Monterey / x86_64  OK    ERROR  

BUILD results for methylationArrayAnalysis on palomino7

To the developers/maintainers of the methylationArrayAnalysis package:
- Use the following Renviron settings to reproduce errors and warnings.
- If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information.

raw results


Summary

Package: methylationArrayAnalysis
Version: 1.28.0
Command: chmod a+r methylationArrayAnalysis -R && E:\biocbuild\bbs-3.19-bioc\R\bin\R.exe CMD build --keep-empty-dirs --no-resave-data methylationArrayAnalysis
StartedAt: 2024-10-18 13:08:26 -0400 (Fri, 18 Oct 2024)
EndedAt: 2024-10-18 13:25:13 -0400 (Fri, 18 Oct 2024)
EllapsedTime: 1007.5 seconds
RetCode: 1
Status:   ERROR  
PackageFile: None
PackageFileSize: NA

Command output

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### Running command:
###
###   chmod a+r methylationArrayAnalysis -R && E:\biocbuild\bbs-3.19-bioc\R\bin\R.exe CMD build --keep-empty-dirs --no-resave-data methylationArrayAnalysis
###
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* checking for file 'methylationArrayAnalysis/DESCRIPTION' ... OK
* preparing 'methylationArrayAnalysis':
* checking DESCRIPTION meta-information ... OK
* installing the package to build vignettes
* creating vignettes ... ERROR
--- re-building 'methylationArrayAnalysis.Rmd' using rmarkdown

Quitting from lines 461-465 [figure10] (methylationArrayAnalysis.Rmd)
Error: processing vignette 'methylationArrayAnalysis.Rmd' failed with diagnostics:
There doesn't seem to be any chromosome length data available for genome 'hg19' at UCSC or the service is temporarily down.
--- failed re-building 'methylationArrayAnalysis.Rmd'

SUMMARY: processing the following file failed:
  'methylationArrayAnalysis.Rmd'

Error: Vignette re-building failed.
Execution halted