Back to Build/check report for BioC 3.19 experimental data |
|
This page was generated on 2024-10-17 14:51 -0400 (Thu, 17 Oct 2024).
Hostname | OS | Arch (*) | R version | Installed pkgs |
---|---|---|---|---|
nebbiolo1 | Linux (Ubuntu 22.04.3 LTS) | x86_64 | 4.4.1 (2024-06-14) -- "Race for Your Life" | 4763 |
Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X |
Package 296/430 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | ||||||||
PREDAsampledata 0.44.0 (landing page) Francesco Ferrari
| nebbiolo1 | Linux (Ubuntu 22.04.3 LTS) / x86_64 | OK | OK | OK | ||||||||
To the developers/maintainers of the PREDAsampledata package: - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information. |
Package: PREDAsampledata |
Version: 0.44.0 |
Command: /home/biocbuild/bbs-3.19-bioc/R/bin/R CMD check --install=check:PREDAsampledata.install-out.txt --library=/home/biocbuild/bbs-3.19-bioc/R/site-library --timings PREDAsampledata_0.44.0.tar.gz |
StartedAt: 2024-10-17 11:54:19 -0400 (Thu, 17 Oct 2024) |
EndedAt: 2024-10-17 11:56:08 -0400 (Thu, 17 Oct 2024) |
EllapsedTime: 109.0 seconds |
RetCode: 0 |
Status: OK |
CheckDir: PREDAsampledata.Rcheck |
Warnings: 0 |
############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/bbs-3.19-bioc/R/bin/R CMD check --install=check:PREDAsampledata.install-out.txt --library=/home/biocbuild/bbs-3.19-bioc/R/site-library --timings PREDAsampledata_0.44.0.tar.gz ### ############################################################################## ############################################################################## * using log directory ‘/home/biocbuild/bbs-3.19-data-experiment/meat/PREDAsampledata.Rcheck’ * using R version 4.4.1 (2024-06-14) * using platform: x86_64-pc-linux-gnu * R was compiled by gcc (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0 GNU Fortran (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0 * running under: Ubuntu 22.04.5 LTS * using session charset: UTF-8 * checking for file ‘PREDAsampledata/DESCRIPTION’ ... OK * this is package ‘PREDAsampledata’ version ‘0.44.0’ * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking for sufficient/correct file permissions ... OK * checking whether package ‘PREDAsampledata’ can be installed ... OK * checking installed package size ... NOTE installed size is 73.0Mb sub-directories of 1Mb or more: data 59.7Mb sampledata 13.2Mb * checking package directory ... OK * checking DESCRIPTION meta-information ... NOTE Malformed Description field: should contain one or more complete sentences. * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking code files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... OK * checking whether the package can be loaded with stated dependencies ... OK * checking whether the package can be unloaded cleanly ... OK * checking whether the namespace can be loaded with stated dependencies ... OK * checking whether the namespace can be unloaded cleanly ... OK * checking loading without being on the library search path ... OK * checking dependencies in R code ... NOTE Packages in Depends field not imported from: ‘Biobase’ ‘PREDA’ ‘affy’ ‘annotate’ ‘methods’ These packages need to be imported from (in the NAMESPACE file) for when this namespace is loaded but not attached. * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... OK * checking Rd files ... OK * checking Rd metadata ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking contents of ‘data’ directory ... OK * checking data for non-ASCII characters ... OK * checking data for ASCII and uncompressed saves ... OK * checking examples ... OK Examples with CPU (user + system) or elapsed time > 5s user system elapsed AffybatchRCC 5.56 0.296 5.858 * checking PDF version of manual ... OK * DONE Status: 3 NOTEs See ‘/home/biocbuild/bbs-3.19-data-experiment/meat/PREDAsampledata.Rcheck/00check.log’ for details.
PREDAsampledata.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/bbs-3.19-bioc/R/bin/R CMD INSTALL PREDAsampledata ### ############################################################################## ############################################################################## * installing to library ‘/home/biocbuild/bbs-3.19-bioc/R/site-library’ * installing *source* package ‘PREDAsampledata’ ... ** using staged installation ** R ** data ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (PREDAsampledata)
PREDAsampledata.Rcheck/PREDAsampledata-Ex.timings
name | user | system | elapsed | |
AffybatchRCC | 5.560 | 0.296 | 5.858 | |
ExpressionSetRCC | 0.852 | 0.024 | 0.877 | |
GEanalysisResults | 0.194 | 0.008 | 0.202 | |
SODEGIRCNDataForPREDA | 0.779 | 0.044 | 0.823 | |
SODEGIRCNanalysisResults | 0.315 | 0.012 | 0.327 | |
SODEGIRGEDataForPREDA | 0.287 | 0.024 | 0.311 | |
SODEGIRGEanalysisResults | 0.703 | 0.024 | 0.727 | |