Back to Build/check report for BioC 3.19 experimental data |
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This page was generated on 2024-10-17 14:51 -0400 (Thu, 17 Oct 2024).
Hostname | OS | Arch (*) | R version | Installed pkgs |
---|---|---|---|---|
nebbiolo1 | Linux (Ubuntu 22.04.3 LTS) | x86_64 | 4.4.1 (2024-06-14) -- "Race for Your Life" | 4763 |
Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X |
Package 128/430 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | ||||||||
Fletcher2013b 1.40.0 (landing page) Mauro Castro
| nebbiolo1 | Linux (Ubuntu 22.04.3 LTS) / x86_64 | OK | OK | WARNINGS | ||||||||
To the developers/maintainers of the Fletcher2013b package: - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information. |
Package: Fletcher2013b |
Version: 1.40.0 |
Command: /home/biocbuild/bbs-3.19-bioc/R/bin/R CMD check --install=check:Fletcher2013b.install-out.txt --library=/home/biocbuild/bbs-3.19-bioc/R/site-library --timings Fletcher2013b_1.40.0.tar.gz |
StartedAt: 2024-10-17 11:23:32 -0400 (Thu, 17 Oct 2024) |
EndedAt: 2024-10-17 11:27:11 -0400 (Thu, 17 Oct 2024) |
EllapsedTime: 219.7 seconds |
RetCode: 0 |
Status: WARNINGS |
CheckDir: Fletcher2013b.Rcheck |
Warnings: 1 |
############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/bbs-3.19-bioc/R/bin/R CMD check --install=check:Fletcher2013b.install-out.txt --library=/home/biocbuild/bbs-3.19-bioc/R/site-library --timings Fletcher2013b_1.40.0.tar.gz ### ############################################################################## ############################################################################## * using log directory ‘/home/biocbuild/bbs-3.19-data-experiment/meat/Fletcher2013b.Rcheck’ * using R version 4.4.1 (2024-06-14) * using platform: x86_64-pc-linux-gnu * R was compiled by gcc (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0 GNU Fortran (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0 * running under: Ubuntu 22.04.5 LTS * using session charset: UTF-8 * checking for file ‘Fletcher2013b/DESCRIPTION’ ... OK * this is package ‘Fletcher2013b’ version ‘1.40.0’ * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking for sufficient/correct file permissions ... OK * checking whether package ‘Fletcher2013b’ can be installed ... WARNING Found the following significant warnings: Note: possible error in 'att.setv(g = g, from = "degree", ': unused argument (roundleg = 1) See ‘/home/biocbuild/bbs-3.19-data-experiment/meat/Fletcher2013b.Rcheck/00install.out’ for details. Information on the location(s) of code generating the ‘Note’s can be obtained by re-running with environment variable R_KEEP_PKG_SOURCE set to ‘yes’. * checking installed package size ... NOTE installed size is 263.1Mb sub-directories of 1Mb or more: data 263.0Mb * checking package directory ... OK * checking ‘build’ directory ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking code files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... OK * checking whether the package can be loaded with stated dependencies ... OK * checking whether the package can be unloaded cleanly ... OK * checking whether the namespace can be loaded with stated dependencies ... OK * checking whether the namespace can be unloaded cleanly ... OK * checking loading without being on the library search path ... OK * checking dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... NOTE Fletcher2013pipeline.enrichmap: possible error in att.setv(g = g, from = "degree", to = "nodeSize", xlim = c(50, 210, 1), nquant = 10, roundleg = 1): unused argument (roundleg = 1) * checking Rd files ... OK * checking Rd metadata ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking contents of ‘data’ directory ... OK * checking data for non-ASCII characters ... OK * checking data for ASCII and uncompressed saves ... OK * checking files in ‘vignettes’ ... OK * checking examples ... OK * checking for unstated dependencies in vignettes ... OK * checking package vignettes ... OK * checking re-building of vignette outputs ... OK * checking PDF version of manual ... OK * DONE Status: 1 WARNING, 2 NOTEs See ‘/home/biocbuild/bbs-3.19-data-experiment/meat/Fletcher2013b.Rcheck/00check.log’ for details.
Fletcher2013b.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/bbs-3.19-bioc/R/bin/R CMD INSTALL Fletcher2013b ### ############################################################################## ############################################################################## * installing to library ‘/home/biocbuild/bbs-3.19-bioc/R/site-library’ * installing *source* package ‘Fletcher2013b’ ... ** using staged installation ** R ** data ** inst ** byte-compile and prepare package for lazy loading Note: possible error in 'att.setv(g = g, from = "degree", ': unused argument (roundleg = 1) ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (Fletcher2013b)
Fletcher2013b.Rcheck/Fletcher2013b-Ex.timings
name | user | system | elapsed | |
Fletcher2013b.pipelines | 0.001 | 0.000 | 0.001 | |
miscellaneous | 0.323 | 0.019 | 0.344 | |
rtni.data | 3.771 | 0.311 | 4.098 | |
siRNA | 0.006 | 0.000 | 0.006 | |