Kent Riemondy
| Snapshot Date: 2024-07-10 14:00 -0400 (Wed, 10 Jul 2024) |
| git_url: https://git.bioconductor.org/packages/raer |
| git_branch: RELEASE_3_19 |
| git_last_commit: c2ce20e |
| git_last_commit_date: 2024-04-30 11:52:24 -0400 (Tue, 30 Apr 2024) |
| Back to Multiple platform build/check report for BioC 3.19: simplified long |
|
This page was generated on 2024-07-12 17:40 -0400 (Fri, 12 Jul 2024).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| nebbiolo1 | Linux (Ubuntu 22.04.3 LTS) | x86_64 | 4.4.1 (2024-06-14) -- "Race for Your Life" | 4741 |
| palomino7 | Windows Server 2022 Datacenter | x64 | 4.4.1 (2024-06-14 ucrt) -- "Race for Your Life" | 4483 |
| merida1 | macOS 12.7.4 Monterey | x86_64 | 4.4.1 (2024-06-14) -- "Race for Your Life" | 4512 |
| kjohnson1 | macOS 13.6.6 Ventura | arm64 | 4.4.1 (2024-06-14) -- "Race for Your Life" | 4461 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
| Package 1667/2300 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| raer 1.2.0 (landing page) Kent Riemondy
| nebbiolo1 | Linux (Ubuntu 22.04.3 LTS) / x86_64 | OK | OK | OK | | ||||||||
| palomino7 | Windows Server 2022 Datacenter / x64 | OK | ERROR | skipped | skipped | |||||||||
| merida1 | macOS 12.7.4 Monterey / x86_64 | OK | OK | OK | OK | | ||||||||
| kjohnson1 | macOS 13.6.6 Ventura / arm64 | OK | ERROR | skipped | skipped | |||||||||
|
To the developers/maintainers of the raer package: - Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/raer.git to reflect on this report. See Troubleshooting Build Report for more information. - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information. |
| Package: raer |
| Version: 1.2.0 |
| Command: chmod a+r raer -R && E:\biocbuild\bbs-3.19-bioc\R\bin\R.exe CMD build --keep-empty-dirs --no-resave-data raer |
| StartedAt: 2024-07-11 20:18:10 -0400 (Thu, 11 Jul 2024) |
| EndedAt: 2024-07-11 20:28:05 -0400 (Thu, 11 Jul 2024) |
| EllapsedTime: 595.8 seconds |
| RetCode: 1 |
| Status: ERROR |
| PackageFile: None |
| PackageFileSize: NA |
############################################################################## ############################################################################## ### ### Running command: ### ### chmod a+r raer -R && E:\biocbuild\bbs-3.19-bioc\R\bin\R.exe CMD build --keep-empty-dirs --no-resave-data raer ### ############################################################################## ############################################################################## * checking for file 'raer/DESCRIPTION' ... OK * preparing 'raer': * checking DESCRIPTION meta-information ... OK * cleaning src * installing the package to build vignettes * creating vignettes ... ERROR --- re-building 'raer.Rmd' using rmarkdown [E::hts_idx_load3] Could not load local index file 'E:\biocbuild\ExperimentHub_cache/45f0cec635d_8465' : Invalid argument [raer internal] fail to load bamfile index for E:\biocbuild\ExperimentHub_cache/45f070d6da4_8464 Quitting from lines 598-621 [unnamed-chunk-30] (raer.Rmd) Error: processing vignette 'raer.Rmd' failed with diagnostics: [raer internal] error detected during pileup --- failed re-building 'raer.Rmd' SUMMARY: processing the following file failed: 'raer.Rmd' Error: Vignette re-building failed. Execution halted