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This page was generated on 2024-06-11 14:44 -0400 (Tue, 11 Jun 2024).

HostnameOSArch (*)R versionInstalled pkgs
nebbiolo1Linux (Ubuntu 22.04.3 LTS)x86_644.4.0 (2024-04-24) -- "Puppy Cup" 4757
palomino3Windows Server 2022 Datacenterx644.4.0 (2024-04-24 ucrt) -- "Puppy Cup" 4491
lconwaymacOS 12.7.1 Montereyx86_644.4.0 (2024-04-24) -- "Puppy Cup" 4522
kjohnson3macOS 13.6.5 Venturaarm644.4.0 (2024-04-24) -- "Puppy Cup" 4468
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

Package 1627/2300HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
psichomics 1.30.0  (landing page)
Nuno Saraiva-Agostinho
Snapshot Date: 2024-06-09 14:00 -0400 (Sun, 09 Jun 2024)
git_url: https://git.bioconductor.org/packages/psichomics
git_branch: RELEASE_3_19
git_last_commit: 67f272c
git_last_commit_date: 2024-04-30 10:54:27 -0400 (Tue, 30 Apr 2024)
nebbiolo1Linux (Ubuntu 22.04.3 LTS) / x86_64  OK    ERROR  skipped
palomino3Windows Server 2022 Datacenter / x64  OK    ERROR  skippedskipped
lconwaymacOS 12.7.1 Monterey / x86_64  OK    ERROR  skippedskipped
kjohnson3macOS 13.6.5 Ventura / arm64  OK    ERROR  skippedskipped

BUILD results for psichomics on kjohnson3

To the developers/maintainers of the psichomics package:
- Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/psichomics.git to reflect on this report. See Troubleshooting Build Report for more information.
- Use the following Renviron settings to reproduce errors and warnings.
- If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information.

raw results


Summary

Package: psichomics
Version: 1.30.0
Command: /Library/Frameworks/R.framework/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data psichomics
StartedAt: 2024-06-10 02:50:19 -0400 (Mon, 10 Jun 2024)
EndedAt: 2024-06-10 02:52:58 -0400 (Mon, 10 Jun 2024)
EllapsedTime: 158.3 seconds
RetCode: 1
Status:   ERROR  
PackageFile: None
PackageFileSize: NA

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   /Library/Frameworks/R.framework/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data psichomics
###
##############################################################################
##############################################################################


* checking for file ‘psichomics/DESCRIPTION’ ... OK
* preparing ‘psichomics’:
* checking DESCRIPTION meta-information ... OK
* cleaning src
* installing the package to build vignettes
* creating vignettes ... ERROR
--- re-building ‘AS_events_preparation.Rmd’ using rmarkdown
--- finished re-building ‘AS_events_preparation.Rmd’

--- re-building ‘CLI_tutorial.Rmd’ using rmarkdown

Quitting from lines 76-84 [TCGA options] (CLI_tutorial.Rmd)
Error: processing vignette 'CLI_tutorial.Rmd' failed with diagnostics:
lexical error: invalid char in json text.
                                       <!DOCTYPE html PUBLIC "-//W3C//
                     (right here) ------^

--- failed re-building ‘CLI_tutorial.Rmd’

--- re-building ‘GUI_tutorial.Rmd’ using rmarkdown
--- finished re-building ‘GUI_tutorial.Rmd’

--- re-building ‘custom_data.Rmd’ using rmarkdown
--- finished re-building ‘custom_data.Rmd’

SUMMARY: processing the following file failed:
  ‘CLI_tutorial.Rmd’

Error: Vignette re-building failed.
Execution halted