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This page was generated on 2024-10-18 20:42 -0400 (Fri, 18 Oct 2024).

HostnameOSArch (*)R versionInstalled pkgs
nebbiolo1Linux (Ubuntu 22.04.3 LTS)x86_644.4.1 (2024-06-14) -- "Race for Your Life" 4763
palomino7Windows Server 2022 Datacenterx644.4.1 (2024-06-14 ucrt) -- "Race for Your Life" 4500
merida1macOS 12.7.5 Montereyx86_644.4.1 (2024-06-14) -- "Race for Your Life" 4530
kjohnson1macOS 13.6.6 Venturaarm644.4.1 (2024-06-14) -- "Race for Your Life" 4480
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

Package 873/2300HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
gINTomics 1.0.0  (landing page)
Angelo Velle
Snapshot Date: 2024-10-16 14:00 -0400 (Wed, 16 Oct 2024)
git_url: https://git.bioconductor.org/packages/gINTomics
git_branch: RELEASE_3_19
git_last_commit: 6525a11
git_last_commit_date: 2024-04-30 11:56:24 -0400 (Tue, 30 Apr 2024)
nebbiolo1Linux (Ubuntu 22.04.3 LTS) / x86_64  OK    OK    OK  UNNEEDED, same version is already published
palomino7Windows Server 2022 Datacenter / x64  OK    OK    OK    OK  UNNEEDED, same version is already published
merida1macOS 12.7.5 Monterey / x86_64  OK    OK    ERROR    OK  
kjohnson1macOS 13.6.6 Ventura / arm64  OK    OK    OK    OK  UNNEEDED, same version is already published

INSTALL results for gINTomics on kjohnson1

To the developers/maintainers of the gINTomics package:
- Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/gINTomics.git to reflect on this report. See Troubleshooting Build Report for more information.
- Use the following Renviron settings to reproduce errors and warnings.
- If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information.

raw results


Summary

Package: gINTomics
Version: 1.0.0
Command: /Library/Frameworks/R.framework/Resources/bin/R CMD INSTALL gINTomics
StartedAt: 2024-10-16 17:56:48 -0400 (Wed, 16 Oct 2024)
EndedAt: 2024-10-16 17:58:14 -0400 (Wed, 16 Oct 2024)
EllapsedTime: 86.4 seconds
RetCode: 0
Status:   OK  

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   /Library/Frameworks/R.framework/Resources/bin/R CMD INSTALL gINTomics
###
##############################################################################
##############################################################################


* installing to library ‘/Library/Frameworks/R.framework/Versions/4.4-arm64/Resources/library’
* installing *source* package ‘gINTomics’ ...
** using staged installation
** R
[2024-10-16 17:57:03] [TRACE]   [OmnipathR] Reading JSON from `/Users/biocbuild/Library/Caches/OmnipathR/cache.json` (encoding: UTF-8).
[2024-10-16 17:57:03] [TRACE]   [OmnipathR] JSON validation successful: TRUE
[2024-10-16 17:57:03] [INFO]    [OmnipathR] Initialized cache: `/Users/biocbuild/Library/Caches/OmnipathR`.
[2024-10-16 17:57:03] [TRACE]   [OmnipathR] Running on a build server, wiping cache.
[2024-10-16 17:57:03] [TRACE]   [OmnipathR] Cache is at `/Users/biocbuild/Library/Caches/OmnipathR`.
[2024-10-16 17:57:03] [TRACE]   [OmnipathR] Contains 1 files.
[2024-10-16 17:57:03] [TRACE]   [OmnipathR] Cache is locked: FALSE.
[2024-10-16 17:57:03] [TRACE]   [OmnipathR] Reading JSON from `/Users/biocbuild/Library/Caches/OmnipathR/cache.json` (encoding: UTF-8).
[2024-10-16 17:57:03] [TRACE]   [OmnipathR] JSON validation successful: TRUE
[2024-10-16 17:57:03] [SUCCESS] [OmnipathR] Removing all cache contents from `/Users/biocbuild/Library/Caches/OmnipathR`.
[2024-10-16 17:57:04] [TRACE]   [OmnipathR] Pandoc version: `3.1.2`.
[2024-10-16 17:57:04] [TRACE]   [OmnipathR] Reading JSON from `/Library/Frameworks/R.framework/Versions/4.4-arm64/Resources/library/OmnipathR/db/db_def.json` (encoding: UTF-8).
[2024-10-16 17:57:04] [TRACE]   [OmnipathR] JSON validation successful: TRUE
[2024-10-16 17:57:04] [TRACE]   [OmnipathR] Reading JSON from `/Library/Frameworks/R.framework/Versions/4.4-arm64/Resources/library/OmnipathR/internal/magic_bytes.json` (encoding: UTF-8).
[2024-10-16 17:57:04] [TRACE]   [OmnipathR] JSON validation successful: TRUE
[2024-10-16 17:57:04] [TRACE]   [OmnipathR] Reading JSON from `/Library/Frameworks/R.framework/Versions/4.4-arm64/Resources/library/OmnipathR/internal/urls.json` (encoding: UTF-8).
[2024-10-16 17:57:04] [TRACE]   [OmnipathR] JSON validation successful: TRUE
[2024-10-16 17:57:04] [TRACE]   [OmnipathR] Reading JSON from `/Library/Frameworks/R.framework/Versions/4.4-arm64/Resources/library/OmnipathR/internal/id_types.json` (encoding: UTF-8).
[2024-10-16 17:57:04] [TRACE]   [OmnipathR] JSON validation successful: TRUE
[2024-10-16 17:57:04] [TRACE]   [OmnipathR] Cache locked: FALSE



** data
** inst
** byte-compile and prepare package for lazy loading
[2024-10-16 17:57:24] [TRACE]   [OmnipathR] Reading JSON from `/Users/biocbuild/Library/Caches/OmnipathR/cache.json` (encoding: UTF-8).
[2024-10-16 17:57:24] [TRACE]   [OmnipathR] JSON validation successful: TRUE
[2024-10-16 17:57:24] [INFO]    [OmnipathR] Initialized cache: `/Users/biocbuild/Library/Caches/OmnipathR`.
[2024-10-16 17:57:24] [TRACE]   [OmnipathR] Running on a build server, wiping cache.
[2024-10-16 17:57:24] [TRACE]   [OmnipathR] Cache is at `/Users/biocbuild/Library/Caches/OmnipathR`.
[2024-10-16 17:57:24] [TRACE]   [OmnipathR] Contains 1 files.
[2024-10-16 17:57:24] [TRACE]   [OmnipathR] Cache is locked: FALSE.
[2024-10-16 17:57:24] [TRACE]   [OmnipathR] Reading JSON from `/Users/biocbuild/Library/Caches/OmnipathR/cache.json` (encoding: UTF-8).
[2024-10-16 17:57:24] [TRACE]   [OmnipathR] JSON validation successful: TRUE
[2024-10-16 17:57:24] [SUCCESS] [OmnipathR] Removing all cache contents from `/Users/biocbuild/Library/Caches/OmnipathR`.
[2024-10-16 17:57:24] [TRACE]   [OmnipathR] Pandoc version: `3.1.2`.
[2024-10-16 17:57:24] [TRACE]   [OmnipathR] Reading JSON from `/Library/Frameworks/R.framework/Versions/4.4-arm64/Resources/library/OmnipathR/db/db_def.json` (encoding: UTF-8).
[2024-10-16 17:57:24] [TRACE]   [OmnipathR] JSON validation successful: TRUE
[2024-10-16 17:57:24] [TRACE]   [OmnipathR] Reading JSON from `/Library/Frameworks/R.framework/Versions/4.4-arm64/Resources/library/OmnipathR/internal/magic_bytes.json` (encoding: UTF-8).
[2024-10-16 17:57:24] [TRACE]   [OmnipathR] JSON validation successful: TRUE
[2024-10-16 17:57:24] [TRACE]   [OmnipathR] Reading JSON from `/Library/Frameworks/R.framework/Versions/4.4-arm64/Resources/library/OmnipathR/internal/urls.json` (encoding: UTF-8).
[2024-10-16 17:57:24] [TRACE]   [OmnipathR] JSON validation successful: TRUE
[2024-10-16 17:57:24] [TRACE]   [OmnipathR] Reading JSON from `/Library/Frameworks/R.framework/Versions/4.4-arm64/Resources/library/OmnipathR/internal/id_types.json` (encoding: UTF-8).
[2024-10-16 17:57:24] [TRACE]   [OmnipathR] JSON validation successful: TRUE
[2024-10-16 17:57:24] [TRACE]   [OmnipathR] Cache locked: FALSE
** help
*** installing help indices
*** copying figures
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
[2024-10-16 17:57:48] [TRACE]   [OmnipathR] Reading JSON from `/Users/biocbuild/Library/Caches/OmnipathR/cache.json` (encoding: UTF-8).
[2024-10-16 17:57:48] [TRACE]   [OmnipathR] JSON validation successful: TRUE
[2024-10-16 17:57:48] [INFO]    [OmnipathR] Initialized cache: `/Users/biocbuild/Library/Caches/OmnipathR`.
[2024-10-16 17:57:48] [TRACE]   [OmnipathR] Running on a build server, wiping cache.
[2024-10-16 17:57:48] [TRACE]   [OmnipathR] Cache is at `/Users/biocbuild/Library/Caches/OmnipathR`.
[2024-10-16 17:57:48] [TRACE]   [OmnipathR] Contains 1 files.
[2024-10-16 17:57:48] [TRACE]   [OmnipathR] Cache is locked: FALSE.
[2024-10-16 17:57:48] [TRACE]   [OmnipathR] Reading JSON from `/Users/biocbuild/Library/Caches/OmnipathR/cache.json` (encoding: UTF-8).
[2024-10-16 17:57:48] [TRACE]   [OmnipathR] JSON validation successful: TRUE
[2024-10-16 17:57:48] [SUCCESS] [OmnipathR] Removing all cache contents from `/Users/biocbuild/Library/Caches/OmnipathR`.
[2024-10-16 17:57:48] [TRACE]   [OmnipathR] Pandoc version: `3.1.2`.
[2024-10-16 17:57:48] [TRACE]   [OmnipathR] Reading JSON from `/Library/Frameworks/R.framework/Versions/4.4-arm64/Resources/library/OmnipathR/db/db_def.json` (encoding: UTF-8).
[2024-10-16 17:57:48] [TRACE]   [OmnipathR] JSON validation successful: TRUE
[2024-10-16 17:57:48] [TRACE]   [OmnipathR] Reading JSON from `/Library/Frameworks/R.framework/Versions/4.4-arm64/Resources/library/OmnipathR/internal/magic_bytes.json` (encoding: UTF-8).
[2024-10-16 17:57:48] [TRACE]   [OmnipathR] JSON validation successful: TRUE
[2024-10-16 17:57:48] [TRACE]   [OmnipathR] Reading JSON from `/Library/Frameworks/R.framework/Versions/4.4-arm64/Resources/library/OmnipathR/internal/urls.json` (encoding: UTF-8).
[2024-10-16 17:57:48] [TRACE]   [OmnipathR] JSON validation successful: TRUE
[2024-10-16 17:57:48] [TRACE]   [OmnipathR] Reading JSON from `/Library/Frameworks/R.framework/Versions/4.4-arm64/Resources/library/OmnipathR/internal/id_types.json` (encoding: UTF-8).
[2024-10-16 17:57:48] [TRACE]   [OmnipathR] JSON validation successful: TRUE
[2024-10-16 17:57:48] [TRACE]   [OmnipathR] Cache locked: FALSE
** testing if installed package can be loaded from final location
[2024-10-16 17:58:08] [TRACE]   [OmnipathR] Reading JSON from `/Users/biocbuild/Library/Caches/OmnipathR/cache.json` (encoding: UTF-8).
[2024-10-16 17:58:08] [TRACE]   [OmnipathR] JSON validation successful: TRUE
[2024-10-16 17:58:08] [INFO]    [OmnipathR] Initialized cache: `/Users/biocbuild/Library/Caches/OmnipathR`.
[2024-10-16 17:58:08] [TRACE]   [OmnipathR] Running on a build server, wiping cache.
[2024-10-16 17:58:08] [TRACE]   [OmnipathR] Cache is at `/Users/biocbuild/Library/Caches/OmnipathR`.
[2024-10-16 17:58:08] [TRACE]   [OmnipathR] Contains 1 files.
[2024-10-16 17:58:08] [TRACE]   [OmnipathR] Cache is locked: FALSE.
[2024-10-16 17:58:08] [TRACE]   [OmnipathR] Reading JSON from `/Users/biocbuild/Library/Caches/OmnipathR/cache.json` (encoding: UTF-8).
[2024-10-16 17:58:08] [TRACE]   [OmnipathR] JSON validation successful: TRUE
[2024-10-16 17:58:08] [SUCCESS] [OmnipathR] Removing all cache contents from `/Users/biocbuild/Library/Caches/OmnipathR`.
[2024-10-16 17:58:08] [TRACE]   [OmnipathR] Pandoc version: `3.1.2`.
[2024-10-16 17:58:08] [TRACE]   [OmnipathR] Reading JSON from `/Library/Frameworks/R.framework/Versions/4.4-arm64/Resources/library/OmnipathR/db/db_def.json` (encoding: UTF-8).
[2024-10-16 17:58:08] [TRACE]   [OmnipathR] JSON validation successful: TRUE
[2024-10-16 17:58:08] [TRACE]   [OmnipathR] Reading JSON from `/Library/Frameworks/R.framework/Versions/4.4-arm64/Resources/library/OmnipathR/internal/magic_bytes.json` (encoding: UTF-8).
[2024-10-16 17:58:08] [TRACE]   [OmnipathR] JSON validation successful: TRUE
[2024-10-16 17:58:08] [TRACE]   [OmnipathR] Reading JSON from `/Library/Frameworks/R.framework/Versions/4.4-arm64/Resources/library/OmnipathR/internal/urls.json` (encoding: UTF-8).
[2024-10-16 17:58:08] [TRACE]   [OmnipathR] JSON validation successful: TRUE
[2024-10-16 17:58:08] [TRACE]   [OmnipathR] Reading JSON from `/Library/Frameworks/R.framework/Versions/4.4-arm64/Resources/library/OmnipathR/internal/id_types.json` (encoding: UTF-8).
[2024-10-16 17:58:08] [TRACE]   [OmnipathR] JSON validation successful: TRUE
[2024-10-16 17:58:08] [TRACE]   [OmnipathR] Cache locked: FALSE
** testing if installed package keeps a record of temporary installation path
* DONE (gINTomics)