Back to Multiple platform build/check report for BioC 3.19:   simplified   long
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This page was generated on 2024-10-18 20:39 -0400 (Fri, 18 Oct 2024).

HostnameOSArch (*)R versionInstalled pkgs
nebbiolo1Linux (Ubuntu 22.04.3 LTS)x86_644.4.1 (2024-06-14) -- "Race for Your Life" 4763
palomino7Windows Server 2022 Datacenterx644.4.1 (2024-06-14 ucrt) -- "Race for Your Life" 4500
merida1macOS 12.7.5 Montereyx86_644.4.1 (2024-06-14) -- "Race for Your Life" 4530
kjohnson1macOS 13.6.6 Venturaarm644.4.1 (2024-06-14) -- "Race for Your Life" 4480
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

Package 200/2300HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
biodbChebi 1.10.0  (landing page)
Pierrick Roger
Snapshot Date: 2024-10-16 14:00 -0400 (Wed, 16 Oct 2024)
git_url: https://git.bioconductor.org/packages/biodbChebi
git_branch: RELEASE_3_19
git_last_commit: fad38a4
git_last_commit_date: 2024-04-30 11:37:31 -0400 (Tue, 30 Apr 2024)
nebbiolo1Linux (Ubuntu 22.04.3 LTS) / x86_64  OK    OK    OK  UNNEEDED, same version is already published
palomino7Windows Server 2022 Datacenter / x64  OK    OK    OK    OK  UNNEEDED, same version is already published
merida1macOS 12.7.5 Monterey / x86_64  OK    OK    OK    OK  UNNEEDED, same version is already published
kjohnson1macOS 13.6.6 Ventura / arm64  OK    OK    OK    OK  UNNEEDED, same version is already published

CHECK results for biodbChebi on palomino7

To the developers/maintainers of the biodbChebi package:
- Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/biodbChebi.git to reflect on this report. See Troubleshooting Build Report for more information.
- Use the following Renviron settings to reproduce errors and warnings.
- If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information.

raw results


Summary

Package: biodbChebi
Version: 1.10.0
Command: E:\biocbuild\bbs-3.19-bioc\R\bin\R.exe CMD check --no-multiarch --install=check:biodbChebi.install-out.txt --library=E:\biocbuild\bbs-3.19-bioc\R\library --no-vignettes --timings biodbChebi_1.10.0.tar.gz
StartedAt: 2024-10-16 23:16:47 -0400 (Wed, 16 Oct 2024)
EndedAt: 2024-10-16 23:21:37 -0400 (Wed, 16 Oct 2024)
EllapsedTime: 290.3 seconds
RetCode: 0
Status:   OK  
CheckDir: biodbChebi.Rcheck
Warnings: 0

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   E:\biocbuild\bbs-3.19-bioc\R\bin\R.exe CMD check --no-multiarch --install=check:biodbChebi.install-out.txt --library=E:\biocbuild\bbs-3.19-bioc\R\library --no-vignettes --timings biodbChebi_1.10.0.tar.gz
###
##############################################################################
##############################################################################


* using log directory 'E:/biocbuild/bbs-3.19-bioc/meat/biodbChebi.Rcheck'
* using R version 4.4.1 (2024-06-14 ucrt)
* using platform: x86_64-w64-mingw32
* R was compiled by
    gcc.exe (GCC) 13.2.0
    GNU Fortran (GCC) 13.2.0
* running under: Windows Server 2022 x64 (build 20348)
* using session charset: UTF-8
* using option '--no-vignettes'
* checking for file 'biodbChebi/DESCRIPTION' ... OK
* this is package 'biodbChebi' version '1.10.0'
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'biodbChebi' can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking code files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking files in 'vignettes' ... OK
* checking examples ... OK
Examples with CPU (user + system) or elapsed time > 5s
          user system elapsed
ChebiConn 4.33   2.38   87.07
* checking for unstated dependencies in 'tests' ... OK
* checking tests ...
  Running 'testthat.R'
 OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE

Status: OK

Installation output

biodbChebi.Rcheck/00install.out

##############################################################################
##############################################################################
###
### Running command:
###
###   E:\biocbuild\bbs-3.19-bioc\R\bin\R.exe CMD INSTALL biodbChebi
###
##############################################################################
##############################################################################


* installing to library 'E:/biocbuild/bbs-3.19-bioc/R/library'
* installing *source* package 'biodbChebi' ...
** using staged installation
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (biodbChebi)

Tests output

biodbChebi.Rcheck/tests/testthat.Rout


R version 4.4.1 (2024-06-14 ucrt) -- "Race for Your Life"
Copyright (C) 2024 The R Foundation for Statistical Computing
Platform: x86_64-w64-mingw32/x64

R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under certain conditions.
Type 'license()' or 'licence()' for distribution details.

R is a collaborative project with many contributors.
Type 'contributors()' for more information and
'citation()' on how to cite R or R packages in publications.

Type 'demo()' for some demos, 'help()' for on-line help, or
'help.start()' for an HTML browser interface to help.
Type 'q()' to quit R.

> # vi: fdm=marker
> # Script needed to run testthat automatically from ‘R CMD check’. See
> # testthat::test_dir documentation.
> library(testthat)
> library(biodbChebi)
> Sys.setenv(TESTTHAT_REPORTER="summary")
> Sys.setenv(BIODB_LOG_DST="console")
> test_check("biodbChebi")
biodb.INFO [2024-10-16 23:19:47.847][biodb::testContext]
biodb.INFO [2024-10-16 23:19:47.852][biodb::testContext] ********************************************************************************
biodb.INFO [2024-10-16 23:19:47.854][biodb::testContext] Test context - Generic tests
biodb.INFO [2024-10-16 23:19:47.856][biodb::testContext] ********************************************************************************
biodb.INFO [2024-10-16 23:19:47.857][biodb::testContext]
biodb.INFO [2024-10-16 23:19:47.865][private$loadBiodbPkgsDefinitions] Loading definitions from package biodb version 1.12.0.
biodb.DEBUG[2024-10-16 23:19:47.868][self$loadDefinitions] Load definitions from file "E:/biocbuild/bbs-3.19-bioc/R/library/biodb/definitions.yml".
biodb.DEBUG[2024-10-16 23:19:47.876][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2024-10-16 23:19:47.878][self$getConfig()$define] Define config key allow.huge.downloads.
biodb.DEBUG[2024-10-16 23:19:47.880][self$set] Set key allow.huge.downloads to TRUE.
biodb.DEBUG[2024-10-16 23:19:47.881][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-10-16 23:19:47.882][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-10-16 23:19:47.883][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-10-16 23:19:47.885][self$getConfig()$define] Define config key autoload.extra.pkgs.
biodb.DEBUG[2024-10-16 23:19:47.922][self$set] Set key autoload.extra.pkgs to TRUE.
biodb.DEBUG[2024-10-16 23:19:47.924][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-10-16 23:19:47.926][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-10-16 23:19:47.928][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-10-16 23:19:47.929][self$getConfig()$define] Define config key cache.all.requests.
biodb.DEBUG[2024-10-16 23:19:47.931][self$set] Set key cache.all.requests to TRUE.
biodb.DEBUG[2024-10-16 23:19:47.932][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-10-16 23:19:47.933][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-10-16 23:19:47.934][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-10-16 23:19:47.935][self$getConfig()$define] Define config key cache.directory.
biodb.DEBUG[2024-10-16 23:19:47.936][self$getConfig()$define] Define config key cache.read.only.
biodb.DEBUG[2024-10-16 23:19:47.938][self$set] Set key cache.read.only to FALSE.
biodb.DEBUG[2024-10-16 23:19:47.939][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-10-16 23:19:47.940][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-10-16 23:19:47.941][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-10-16 23:19:47.942][self$getConfig()$define] Define config key cache.subfolders.
biodb.DEBUG[2024-10-16 23:19:47.944][self$getConfig()$define] Define config key cache.system.
biodb.DEBUG[2024-10-16 23:19:47.945][self$set] Set key cache.system to TRUE.
biodb.DEBUG[2024-10-16 23:19:47.947][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-10-16 23:19:47.949][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-10-16 23:19:47.950][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-10-16 23:19:47.952][self$getConfig()$define] Define config key use.cache.for.local.db.
biodb.DEBUG[2024-10-16 23:19:47.954][self$set] Set key use.cache.for.local.db to FALSE.
biodb.DEBUG[2024-10-16 23:19:47.956][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-10-16 23:19:47.958][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-10-16 23:19:47.960][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-10-16 23:19:47.962][self$getConfig()$define] Define config key dwnld.chunk.size.
biodb.DEBUG[2024-10-16 23:19:47.964][self$getConfig()$define] Define config key dwnld.timeout.
biodb.DEBUG[2024-10-16 23:19:47.966][self$set] Set key dwnld.timeout to 3600.
biodb.DEBUG[2024-10-16 23:19:47.968][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-10-16 23:19:47.969][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-10-16 23:19:47.971][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-10-16 23:19:47.973][self$getConfig()$define] Define config key compute.fields.
biodb.DEBUG[2024-10-16 23:19:47.975][self$set] Set key compute.fields to TRUE.
biodb.DEBUG[2024-10-16 23:19:47.977][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-10-16 23:19:47.978][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-10-16 23:19:47.980][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-10-16 23:19:47.982][self$getConfig()$define] Define config key factory.cache.
biodb.DEBUG[2024-10-16 23:19:47.984][self$getConfig()$define] Define config key force.locale.
biodb.DEBUG[2024-10-16 23:19:47.986][self$set] Set key force.locale to TRUE.
biodb.DEBUG[2024-10-16 23:19:47.987][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-10-16 23:19:47.989][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-10-16 23:19:47.990][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-10-16 23:19:47.992][self$getConfig()$define] Define config key longterm.cache.subfolder.
biodb.DEBUG[2024-10-16 23:19:47.994][self$getConfig()$define] Define config key msg.caution.lvl.
biodb.DEBUG[2024-10-16 23:19:47.996][self$getConfig()$define] Define config key msg.debug.lvl.
biodb.DEBUG[2024-10-16 23:19:47.998][self$getConfig()$define] Define config key msg.info.lvl.
biodb.DEBUG[2024-10-16 23:19:48.000][self$getConfig()$define] Define config key multival.field.sep.
biodb.DEBUG[2024-10-16 23:19:48.001][self$set] Set key multival.field.sep to ";".
biodb.DEBUG[2024-10-16 23:19:48.003][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-10-16 23:19:48.005][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-10-16 23:19:48.006][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-10-16 23:19:48.008][self$getConfig()$define] Define config key intra.field.name.sep.
biodb.DEBUG[2024-10-16 23:19:48.010][self$set] Set key intra.field.name.sep to ".".
biodb.DEBUG[2024-10-16 23:19:48.012][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-10-16 23:19:48.013][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-10-16 23:19:48.015][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-10-16 23:19:48.017][self$getConfig()$define] Define config key entries.sep.
biodb.DEBUG[2024-10-16 23:19:48.019][self$set] Set key entries.sep to "|".
biodb.DEBUG[2024-10-16 23:19:48.020][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-10-16 23:19:48.022][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-10-16 23:19:48.023][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-10-16 23:19:48.025][self$getConfig()$define] Define config key offline.
biodb.DEBUG[2024-10-16 23:19:48.027][self$set] Set key offline to FALSE.
biodb.DEBUG[2024-10-16 23:19:48.029][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-10-16 23:19:48.030][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-10-16 23:19:48.032][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-10-16 23:19:48.034][self$getConfig()$define] Define config key persistent.cache.impl.
biodb.DEBUG[2024-10-16 23:19:48.036][self$set] Set key persistent.cache.impl to "custom".
biodb.DEBUG[2024-10-16 23:19:48.037][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-10-16 23:19:48.039][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-10-16 23:19:48.040][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-10-16 23:19:48.042][self$getConfig()$define] Define config key proton.mass.
biodb.DEBUG[2024-10-16 23:19:48.044][self$set] Set key proton.mass to 1.0072765.
biodb.DEBUG[2024-10-16 23:19:48.046][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-10-16 23:19:48.047][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-10-16 23:19:48.049][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-10-16 23:19:48.051][self$getConfig()$define] Define config key shortterm.cache.subfolder.
biodb.DEBUG[2024-10-16 23:19:48.053][self$getConfig()$define] Define config key svn.binary.path.
biodb.DEBUG[2024-10-16 23:19:48.058][self$set] Set key svn.binary.path to "".
biodb.DEBUG[2024-10-16 23:19:48.060][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-10-16 23:19:48.061][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-10-16 23:19:48.063][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-10-16 23:19:48.065][self$getConfig()$define] Define config key test.functions.
biodb.DEBUG[2024-10-16 23:19:48.066][self$getConfig()$define] Define config key useragent.
biodb.DEBUG[2024-10-16 23:19:48.068][self$set] Set key useragent to "R Bioconductor biodb library.".
biodb.DEBUG[2024-10-16 23:19:48.070][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-10-16 23:19:48.072][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-10-16 23:19:48.073][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-10-16 23:19:48.078][self$getDbsInfo()$define] Define connector comp.csv.file.
biodb.DEBUG[2024-10-16 23:19:48.117][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2024-10-16 23:19:48.133][self$setPropertyValue] Setting property "description" to "A connector to handle a compound database stored inside a CSV file. It is possible to choose the separator for the CSV file, as well as match the column names with the biodb entry fields.".
biodb.DEBUG[2024-10-16 23:19:48.135][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2024-10-16 23:19:48.137][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2024-10-16 23:19:48.140][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2024-10-16 23:19:48.142][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2024-10-16 23:19:48.144][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2024-10-16 23:19:48.146][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2024-10-16 23:19:48.147][self$setPropertyValue] Setting property "entry.content.type" to "tsv".
biodb.DEBUG[2024-10-16 23:19:48.149][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2024-10-16 23:19:48.151][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2024-10-16 23:19:48.153][self$setPropertyValue] Setting property "name" to "Compound CSV File".
biodb.DEBUG[2024-10-16 23:19:48.155][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2024-10-16 23:19:48.157][self$setPropertyValue]
biodb.DEBUG[2024-10-16 23:19:48.159][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2024-10-16 23:19:48.161][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2024-10-16 23:19:48.161][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2024-10-16 23:19:48.161][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2024-10-16 23:19:48.161][self$setPropertyValue] Setting property "searchable.fields" to "average.mass".
biodb.DEBUG[2024-10-16 23:19:48.161][self$setPropertyValue] Setting property "searchable.fields" to "nominal.mass".
biodb.DEBUG[2024-10-16 23:19:48.163][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2024-10-16 23:19:48.165][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-10-16 23:19:48.167][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-10-16 23:19:48.169][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2024-10-16 23:19:48.170][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-10-16 23:19:48.172][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-10-16 23:19:48.174][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2024-10-16 23:19:48.176][self$setPropertyValue]
biodb.DEBUG[2024-10-16 23:19:48.185][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-10-16 23:19:48.186][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-10-16 23:19:48.187][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2024-10-16 23:19:48.188][self$setPropertyValue]
biodb.DEBUG[2024-10-16 23:19:48.190][self$getDbsInfo()$define] Define connector comp.sqlite.
biodb.DEBUG[2024-10-16 23:19:48.192][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2024-10-16 23:19:48.193][self$setPropertyValue] Setting property "description" to "A connector to handle a compound database stored inside an SQLite file.".
biodb.DEBUG[2024-10-16 23:19:48.194][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2024-10-16 23:19:48.196][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2024-10-16 23:19:48.198][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2024-10-16 23:19:48.199][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2024-10-16 23:19:48.201][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2024-10-16 23:19:48.203][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2024-10-16 23:19:48.205][self$setPropertyValue] Setting property "entry.content.type" to "list".
biodb.DEBUG[2024-10-16 23:19:48.207][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2024-10-16 23:19:48.209][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2024-10-16 23:19:48.211][self$setPropertyValue] Setting property "name" to "Compound SQLite".
biodb.DEBUG[2024-10-16 23:19:48.213][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2024-10-16 23:19:48.215][self$setPropertyValue]
biodb.DEBUG[2024-10-16 23:19:48.217][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2024-10-16 23:19:48.219][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2024-10-16 23:19:48.219][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2024-10-16 23:19:48.219][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2024-10-16 23:19:48.219][self$setPropertyValue] Setting property "searchable.fields" to "average.mass".
biodb.DEBUG[2024-10-16 23:19:48.219][self$setPropertyValue] Setting property "searchable.fields" to "nominal.mass".
biodb.DEBUG[2024-10-16 23:19:48.220][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2024-10-16 23:19:48.222][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-10-16 23:19:48.224][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-10-16 23:19:48.226][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2024-10-16 23:19:48.228][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-10-16 23:19:48.229][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-10-16 23:19:48.231][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2024-10-16 23:19:48.233][self$setPropertyValue]
biodb.DEBUG[2024-10-16 23:19:48.235][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-10-16 23:19:48.237][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-10-16 23:19:48.239][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2024-10-16 23:19:48.241][self$setPropertyValue]
biodb.DEBUG[2024-10-16 23:19:48.243][self$getDbsInfo()$define] Define connector mass.csv.file.
biodb.DEBUG[2024-10-16 23:19:48.246][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2024-10-16 23:19:48.248][self$setPropertyValue] Setting property "description" to "A connector to handle a mass spectra database stored inside a CSV file. It is possible to choose the separator for the CSV file, as well as match the column names with the biodb entry fields..".
biodb.DEBUG[2024-10-16 23:19:48.250][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2024-10-16 23:19:48.252][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2024-10-16 23:19:48.254][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2024-10-16 23:19:48.256][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2024-10-16 23:19:48.258][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2024-10-16 23:19:48.260][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2024-10-16 23:19:48.262][self$setPropertyValue] Setting property "entry.content.type" to "tsv".
biodb.DEBUG[2024-10-16 23:19:48.264][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2024-10-16 23:19:48.266][self$setPropertyValue] Setting property "mass.db" to "TRUE".
biodb.DEBUG[2024-10-16 23:19:48.268][self$setPropertyValue] Setting property "name" to "Mass spectra CSV File".
biodb.DEBUG[2024-10-16 23:19:48.270][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2024-10-16 23:19:48.272][self$setPropertyValue]
biodb.DEBUG[2024-10-16 23:19:48.274][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2024-10-16 23:19:48.276][self$setPropertyValue]
biodb.DEBUG[2024-10-16 23:19:48.278][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2024-10-16 23:19:48.280][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-10-16 23:19:48.282][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-10-16 23:19:48.283][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2024-10-16 23:19:48.285][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-10-16 23:19:48.287][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-10-16 23:19:48.289][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2024-10-16 23:19:48.291][self$setPropertyValue]
biodb.DEBUG[2024-10-16 23:19:48.293][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-10-16 23:19:48.294][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-10-16 23:19:48.296][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2024-10-16 23:19:48.298][self$setPropertyValue]
biodb.DEBUG[2024-10-16 23:19:48.300][self$getDbsInfo()$define] Define connector mass.sqlite.
biodb.DEBUG[2024-10-16 23:19:48.303][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2024-10-16 23:19:48.305][self$setPropertyValue] Setting property "description" to "A connector to handle a mass spectra database stored inside an SQLite file.".
biodb.DEBUG[2024-10-16 23:19:48.307][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2024-10-16 23:19:48.309][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2024-10-16 23:19:48.311][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2024-10-16 23:19:48.313][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2024-10-16 23:19:48.315][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2024-10-16 23:19:48.317][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2024-10-16 23:19:48.318][self$setPropertyValue] Setting property "entry.content.type" to "list".
biodb.DEBUG[2024-10-16 23:19:48.320][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2024-10-16 23:19:48.322][self$setPropertyValue] Setting property "mass.db" to "TRUE".
biodb.DEBUG[2024-10-16 23:19:48.324][self$setPropertyValue] Setting property "name" to "Mass spectra SQLite".
biodb.DEBUG[2024-10-16 23:19:48.326][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2024-10-16 23:19:48.328][self$setPropertyValue]
biodb.DEBUG[2024-10-16 23:19:48.330][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2024-10-16 23:19:48.332][self$setPropertyValue]
biodb.DEBUG[2024-10-16 23:19:48.334][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2024-10-16 23:19:48.336][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-10-16 23:19:48.338][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-10-16 23:19:48.340][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2024-10-16 23:19:48.342][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-10-16 23:19:48.344][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-10-16 23:19:48.346][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2024-10-16 23:19:48.348][self$setPropertyValue]
biodb.DEBUG[2024-10-16 23:19:48.350][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-10-16 23:19:48.352][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-10-16 23:19:48.354][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2024-10-16 23:19:48.356][self$setPropertyValue]
biodb.DEBUG[2024-10-16 23:19:48.362][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2024-10-16 23:19:48.364][FUN] Trying to call function notifyNewObservers on observer BiodbConfig.
biodb.DEBUG[2024-10-16 23:19:48.365][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-10-16 23:19:48.367][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-10-16 23:19:48.369][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-10-16 23:19:48.371][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-10-16 23:19:48.372][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-10-16 23:19:48.374][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-10-16 23:19:48.376][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-10-16 23:19:48.378][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-10-16 23:19:48.379][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-10-16 23:19:48.381][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-10-16 23:19:48.383][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-10-16 23:19:48.385][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-10-16 23:19:48.386][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-10-16 23:19:48.388][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-10-16 23:19:48.390][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-10-16 23:19:48.391][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-10-16 23:19:48.393][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-10-16 23:19:48.395][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-10-16 23:19:48.396][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-10-16 23:19:48.398][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-10-16 23:19:48.400][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-10-16 23:19:48.402][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-10-16 23:19:48.404][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-10-16 23:19:48.405][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-10-16 23:19:48.407][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-10-16 23:19:48.409][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-10-16 23:19:48.411][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-10-16 23:19:48.413][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-10-16 23:19:48.415][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-10-16 23:19:48.417][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-10-16 23:19:48.419][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-10-16 23:19:48.420][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-10-16 23:19:48.422][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-10-16 23:19:48.424][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-10-16 23:19:48.426][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-10-16 23:19:48.427][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-10-16 23:19:48.429][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-10-16 23:19:48.431][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-10-16 23:19:48.433][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-10-16 23:19:48.434][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-10-16 23:19:48.436][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-10-16 23:19:48.438][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-10-16 23:19:48.440][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-10-16 23:19:48.441][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-10-16 23:19:48.443][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-10-16 23:19:48.445][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-10-16 23:19:48.447][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-10-16 23:19:48.448][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-10-16 23:19:48.450][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-10-16 23:19:48.452][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-10-16 23:19:48.453][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-10-16 23:19:48.455][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-10-16 23:19:48.457][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-10-16 23:19:48.459][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-10-16 23:19:48.460][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-10-16 23:19:48.462][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-10-16 23:19:48.464][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-10-16 23:19:48.466][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-10-16 23:19:48.467][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-10-16 23:19:48.469][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-10-16 23:19:48.471][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-10-16 23:19:48.472][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-10-16 23:19:48.474][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-10-16 23:19:48.476][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-10-16 23:19:48.478][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-10-16 23:19:48.479][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-10-16 23:19:48.481][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-10-16 23:19:48.483][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-10-16 23:19:48.485][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-10-16 23:19:48.487][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-10-16 23:19:48.489][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-10-16 23:19:48.491][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-10-16 23:19:48.493][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-10-16 23:19:48.495][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-10-16 23:19:48.496][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-10-16 23:19:48.498][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-10-16 23:19:48.500][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-10-16 23:19:48.502][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-10-16 23:19:48.503][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-10-16 23:19:48.505][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-10-16 23:19:48.507][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-10-16 23:19:48.508][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-10-16 23:19:48.510][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-10-16 23:19:48.512][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-10-16 23:19:48.513][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-10-16 23:19:48.515][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-10-16 23:19:48.517][self$getEntryFields()$define] Define field accession.
biodb.DEBUG[2024-10-16 23:19:48.532][self$getEntryFields()$define] Define field description.
biodb.DEBUG[2024-10-16 23:19:48.534][self$getEntryFields()$define] Define field name.
biodb.DEBUG[2024-10-16 23:19:48.537][self$getEntryFields()$define] Define field cas.id.
biodb.DEBUG[2024-10-16 23:19:48.540][self$getEntryFields()$define] Define field chebi.id.
biodb.DEBUG[2024-10-16 23:19:48.542][self$getEntryFields()$define] Define field chemspider.id.
biodb.DEBUG[2024-10-16 23:19:48.545][self$getEntryFields()$define] Define field comp.csv.file.id.
biodb.DEBUG[2024-10-16 23:19:48.547][self$getEntryFields()$define] Define field comp.sqlite.id.
biodb.DEBUG[2024-10-16 23:19:48.550][self$getEntryFields()$define] Define field expasy.enzyme.id.
biodb.DEBUG[2024-10-16 23:19:48.552][self$getEntryFields()$define] Define field hmdb.metabolites.id.
biodb.DEBUG[2024-10-16 23:19:48.555][self$getEntryFields()$define] Define field kegg.compound.id.
biodb.DEBUG[2024-10-16 23:19:48.557][self$getEntryFields()$define] Define field kegg.genes.id.
biodb.DEBUG[2024-10-16 23:19:48.560][self$getEntryFields()$define] Define field mass.csv.file.id.
biodb.DEBUG[2024-10-16 23:19:48.562][self$getEntryFields()$define] Define field mass.sqlite.id.
biodb.DEBUG[2024-10-16 23:19:48.565][self$getEntryFields()$define] Define field ncbi.gene.id.
biodb.DEBUG[2024-10-16 23:19:48.567][self$getEntryFields()$define] Define field ncbi.pubchem.comp.id.
biodb.DEBUG[2024-10-16 23:19:48.570][self$getEntryFields()$define] Define field compound.id.
biodb.DEBUG[2024-10-16 23:19:48.572][self$getEntryFields()$define] Define field average.mass.
biodb.DEBUG[2024-10-16 23:19:48.574][self$getEntryFields()$define] Define field molecular.mass.
biodb.DEBUG[2024-10-16 23:19:48.577][self$getEntryFields()$define] Define field monoisotopic.mass.
biodb.DEBUG[2024-10-16 23:19:48.579][self$getEntryFields()$define] Define field nominal.mass.
biodb.DEBUG[2024-10-16 23:19:48.582][self$getEntryFields()$define] Define field peak.attr.
biodb.DEBUG[2024-10-16 23:19:48.584][self$getEntryFields()$define] Define field peak.comp.
biodb.DEBUG[2024-10-16 23:19:48.586][self$getEntryFields()$define] Define field peak.error.ppm.
biodb.DEBUG[2024-10-16 23:19:48.589][self$getEntryFields()$define] Define field peak.formula.
biodb.DEBUG[2024-10-16 23:19:48.591][self$getEntryFields()$define] Define field peak.intensity.
biodb.DEBUG[2024-10-16 23:19:48.594][self$getEntryFields()$define] Define field peak.mass.
biodb.DEBUG[2024-10-16 23:19:48.596][self$getEntryFields()$define] Define field peak.mztheo.
biodb.DEBUG[2024-10-16 23:19:48.598][self$getEntryFields()$define] Define field peak.mzexp.
biodb.DEBUG[2024-10-16 23:19:48.601][self$getEntryFields()$define] Define field peak.mz.
biodb.DEBUG[2024-10-16 23:19:48.603][self$getEntryFields()$define] Define field peak.relative.intensity.
biodb.DEBUG[2024-10-16 23:19:48.606][self$getEntryFields()$define] Define field peaks.
biodb.DEBUG[2024-10-16 23:19:48.608][self$getEntryFields()$define] Define field chrom.col.constructor.
biodb.DEBUG[2024-10-16 23:19:48.611][self$getEntryFields()$define] Define field chrom.col.diameter.
biodb.DEBUG[2024-10-16 23:19:48.613][self$getEntryFields()$define] Define field chrom.col.id.
biodb.DEBUG[2024-10-16 23:19:48.616][self$getEntryFields()$define] Define field chrom.col.length.
biodb.DEBUG[2024-10-16 23:19:48.618][self$getEntryFields()$define] Define field chrom.col.method.protocol.
biodb.DEBUG[2024-10-16 23:19:48.621][self$getEntryFields()$define] Define field chrom.col.name.
biodb.DEBUG[2024-10-16 23:19:48.623][self$getEntryFields()$define] Define field chrom.flow.gradient.
biodb.DEBUG[2024-10-16 23:19:48.626][self$getEntryFields()$define] Define field chrom.flow.rate.
biodb.DEBUG[2024-10-16 23:19:48.628][self$getEntryFields()$define] Define field chrom.rt.
biodb.DEBUG[2024-10-16 23:19:48.631][self$getEntryFields()$define] Define field chrom.rt.max.
biodb.DEBUG[2024-10-16 23:19:48.633][self$getEntryFields()$define] Define field chrom.rt.min.
biodb.DEBUG[2024-10-16 23:19:48.636][self$getEntryFields()$define] Define field chrom.rt.unit.
biodb.DEBUG[2024-10-16 23:19:48.638][self$getEntryFields()$define] Define field chrom.solvent.
biodb.DEBUG[2024-10-16 23:19:48.641][self$getEntryFields()$define] Define field aa.seq.
biodb.DEBUG[2024-10-16 23:19:48.643][self$getEntryFields()$define] Define field aa.seq.length.
biodb.DEBUG[2024-10-16 23:19:48.646][self$getEntryFields()$define] Define field aa.seq.location.
biodb.DEBUG[2024-10-16 23:19:48.648][self$getEntryFields()$define] Define field nt.seq.
biodb.DEBUG[2024-10-16 23:19:48.651][self$getEntryFields()$define] Define field nt.seq.length.
biodb.DEBUG[2024-10-16 23:19:48.653][self$getEntryFields()$define] Define field ec.
biodb.DEBUG[2024-10-16 23:19:48.656][self$getEntryFields()$define] Define field organism.
biodb.DEBUG[2024-10-16 23:19:48.658][self$getEntryFields()$define] Define field pathway.class.
biodb.DEBUG[2024-10-16 23:19:48.661][self$getEntryFields()$define] Define field catalytic.activity.
biodb.DEBUG[2024-10-16 23:19:48.663][self$getEntryFields()$define] Define field cofactor.
biodb.DEBUG[2024-10-16 23:19:48.666][self$getEntryFields()$define] Define field gene.symbol.
biodb.DEBUG[2024-10-16 23:19:48.668][self$getEntryFields()$define] Define field charge.
biodb.DEBUG[2024-10-16 23:19:48.671][self$getEntryFields()$define] Define field comp.iupac.name.allowed.
biodb.DEBUG[2024-10-16 23:19:48.674][self$getEntryFields()$define] Define field comp.iupac.name.cas.
biodb.DEBUG[2024-10-16 23:19:48.676][self$getEntryFields()$define] Define field comp.iupac.name.pref.
biodb.DEBUG[2024-10-16 23:19:48.679][self$getEntryFields()$define] Define field comp.iupac.name.syst.
biodb.DEBUG[2024-10-16 23:19:48.681][self$getEntryFields()$define] Define field comp.iupac.name.trad.
biodb.DEBUG[2024-10-16 23:19:48.684][self$getEntryFields()$define] Define field comp.super.class.
biodb.DEBUG[2024-10-16 23:19:48.687][self$getEntryFields()$define] Define field equation.
biodb.DEBUG[2024-10-16 23:19:48.689][self$getEntryFields()$define] Define field formula.
biodb.DEBUG[2024-10-16 23:19:48.690][self$getEntryFields()$define] Define field composition.
biodb.DEBUG[2024-10-16 23:19:48.692][self$getEntryFields()$define] Define field inchi.
biodb.DEBUG[2024-10-16 23:19:48.693][self$getEntryFields()$define] Define field inchikey.
biodb.DEBUG[2024-10-16 23:19:48.695][self$getEntryFields()$define] Define field logp.
biodb.DEBUG[2024-10-16 23:19:48.697][self$getEntryFields()$define] Define field ms.level.
biodb.DEBUG[2024-10-16 23:19:48.698][self$getEntryFields()$define] Define field ms.mode.
biodb.DEBUG[2024-10-16 23:19:48.700][self$getEntryFields()$define] Define field msdev.
biodb.DEBUG[2024-10-16 23:19:48.701][self$getEntryFields()$define] Define field msdevtype.
biodb.DEBUG[2024-10-16 23:19:48.703][self$getEntryFields()$define] Define field msprecannot.
biodb.DEBUG[2024-10-16 23:19:48.704][self$getEntryFields()$define] Define field msprecmz.
biodb.DEBUG[2024-10-16 23:19:48.706][self$getEntryFields()$define] Define field mstype.
biodb.DEBUG[2024-10-16 23:19:48.707][self$getEntryFields()$define] Define field nb.compounds.
biodb.DEBUG[2024-10-16 23:19:48.709][self$getEntryFields()$define] Define field nb.peaks.
biodb.DEBUG[2024-10-16 23:19:48.710][self$getEntryFields()$define] Define field products.
biodb.DEBUG[2024-10-16 23:19:48.713][self$getEntryFields()$define] Define field smiles.
biodb.DEBUG[2024-10-16 23:19:48.715][self$getEntryFields()$define] Define field smiles.canonical.
biodb.DEBUG[2024-10-16 23:19:48.718][self$getEntryFields()$define] Define field smiles.isomeric.
biodb.DEBUG[2024-10-16 23:19:48.720][self$getEntryFields()$define] Define field substrates.
biodb.DEBUG[2024-10-16 23:19:48.755][initialize] Created successfully new BiodbMain instance.
biodb.DEBUG[2024-10-16 23:19:48.759][initialize] This is biodb version 1.12.0.
biodb.DEBUG[2024-10-16 23:19:48.764][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2024-10-16 23:19:48.765][FUN] Trying to call function notifyNewObservers on observer BiodbEntryFields.
biodb.DEBUG[2024-10-16 23:19:48.766][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-10-16 23:19:48.767][FUN] Trying to call function notifyNewObservers on observer BiodbConfig.
biodb.DEBUG[2024-10-16 23:19:48.768][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-10-16 23:19:48.773][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-10-16 23:19:48.775][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-10-16 23:19:48.777][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-10-16 23:19:48.779][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-10-16 23:19:48.781][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-10-16 23:19:48.782][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-10-16 23:19:48.783][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-10-16 23:19:48.784][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-10-16 23:19:48.786][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-10-16 23:19:48.787][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-10-16 23:19:48.788][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-10-16 23:19:48.789][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-10-16 23:19:48.791][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-10-16 23:19:48.793][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-10-16 23:19:48.794][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-10-16 23:19:48.796][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-10-16 23:19:48.798][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-10-16 23:19:48.799][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-10-16 23:19:48.801][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-10-16 23:19:48.803][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-10-16 23:19:48.804][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-10-16 23:19:48.806][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-10-16 23:19:48.808][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-10-16 23:19:48.809][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-10-16 23:19:48.811][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-10-16 23:19:48.813][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-10-16 23:19:48.815][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-10-16 23:19:48.816][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-10-16 23:19:48.818][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-10-16 23:19:48.820][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-10-16 23:19:48.821][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-10-16 23:19:48.823][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-10-16 23:19:48.825][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-10-16 23:19:48.826][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-10-16 23:19:48.828][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-10-16 23:19:48.830][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-10-16 23:19:48.832][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-10-16 23:19:48.833][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-10-16 23:19:48.835][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-10-16 23:19:48.845][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-10-16 23:19:48.847][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-10-16 23:19:48.849][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-10-16 23:19:48.851][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-10-16 23:19:48.853][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-10-16 23:19:48.855][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-10-16 23:19:48.857][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-10-16 23:19:48.859][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-10-16 23:19:48.861][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-10-16 23:19:48.862][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-10-16 23:19:48.864][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-10-16 23:19:48.866][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-10-16 23:19:48.868][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-10-16 23:19:48.870][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-10-16 23:19:48.871][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-10-16 23:19:48.873][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-10-16 23:19:48.875][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-10-16 23:19:48.876][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-10-16 23:19:48.878][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-10-16 23:19:48.879][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-10-16 23:19:48.881][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-10-16 23:19:48.883][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-10-16 23:19:48.884][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-10-16 23:19:48.886][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-10-16 23:19:48.888][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-10-16 23:19:48.889][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-10-16 23:19:48.891][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-10-16 23:19:48.892][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-10-16 23:19:48.894][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-10-16 23:19:48.896][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-10-16 23:19:48.897][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-10-16 23:19:48.899][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-10-16 23:19:48.901][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-10-16 23:19:48.902][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-10-16 23:19:48.904][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-10-16 23:19:48.906][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-10-16 23:19:48.907][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-10-16 23:19:48.909][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-10-16 23:19:48.911][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-10-16 23:19:48.912][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-10-16 23:19:48.914][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-10-16 23:19:48.916][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-10-16 23:19:48.917][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-10-16 23:19:48.919][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-10-16 23:19:48.921][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-10-16 23:19:48.923][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-10-16 23:19:48.924][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-10-16 23:19:48.926][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-10-16 23:19:48.928][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-10-16 23:19:48.929][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-10-16 23:19:48.931][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-10-16 23:19:48.933][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-10-16 23:19:48.935][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-10-16 23:19:48.936][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-10-16 23:19:48.938][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-10-16 23:19:48.940][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-10-16 23:19:48.941][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-10-16 23:19:48.943][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-10-16 23:19:48.945][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-10-16 23:19:48.946][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-10-16 23:19:48.948][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-10-16 23:19:48.950][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-10-16 23:19:48.951][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-10-16 23:19:48.953][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-10-16 23:19:48.955][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-10-16 23:19:48.956][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-10-16 23:19:48.958][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-10-16 23:19:48.960][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-10-16 23:19:48.961][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-10-16 23:19:48.963][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-10-16 23:19:48.965][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-10-16 23:19:48.967][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-10-16 23:19:48.969][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-10-16 23:19:48.970][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-10-16 23:19:48.972][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-10-16 23:19:48.974][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-10-16 23:19:48.976][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-10-16 23:19:48.977][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-10-16 23:19:48.979][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-10-16 23:19:48.981][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-10-16 23:19:48.985][biodb$loadDefinitions] Load definitions from file "E:/biocbuild/bbs-3.19-bioc/R/library/biodbChebi/definitions.yml".
biodb.DEBUG[2024-10-16 23:19:49.002][self$getDbsInfo()$define] Define connector chebi.
biodb.DEBUG[2024-10-16 23:19:49.005][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2024-10-16 23:19:49.008][self$setPropertyValue] Setting property "description" to "NA".
biodb.DEBUG[2024-10-16 23:19:49.010][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2024-10-16 23:19:49.012][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2024-10-16 23:19:49.014][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2024-10-16 23:19:49.016][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2024-10-16 23:19:49.018][self$setPropertyValue] Setting property "editable" to "FALSE".
biodb.DEBUG[2024-10-16 23:19:49.020][self$setPropertyValue] Setting property "entry.content.encoding" to "UTF-8".
biodb.DEBUG[2024-10-16 23:19:49.022][self$setPropertyValue] Setting property "entry.content.type" to "xml".
biodb.DEBUG[2024-10-16 23:19:49.024][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2024-10-16 23:19:49.026][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2024-10-16 23:19:49.028][self$setPropertyValue] Setting property "name" to "ChEBI".
biodb.DEBUG[2024-10-16 23:19:49.030][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2024-10-16 23:19:49.032][self$setPropertyValue] Setting property "parsing.expr" to "substring-after(//chebi:return/chebi:chebiId,'CHEBI:')".
biodb.DEBUG[2024-10-16 23:19:49.032][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:charge".
biodb.DEBUG[2024-10-16 23:19:49.032][self$setPropertyValue] Setting property "parsing.expr" to "c("//chebi:Formulae/chebi:source[text()='ChEBI']/../chebi:data", "(//chebi:Formulae/chebi:data)[1]")".
biodb.DEBUG[2024-10-16 23:19:49.032][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:return/chebi:inchi".
biodb.DEBUG[2024-10-16 23:19:49.032][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:return/chebi:inchiKey".
biodb.DEBUG[2024-10-16 23:19:49.032][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:DatabaseLinks/chebi:type[text()='KEGG COMPOUND accession']/../chebi:data".
biodb.DEBUG[2024-10-16 23:19:49.032][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:mass".
biodb.DEBUG[2024-10-16 23:19:49.032][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:monoisotopicMass".
biodb.DEBUG[2024-10-16 23:19:49.032][self$setPropertyValue] Setting property "parsing.expr" to "c("//chebi:chebiAsciiName", "//chebi:Synonyms/chebi:data")".
biodb.DEBUG[2024-10-16 23:19:49.032][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:return/chebi:entityStar".
biodb.DEBUG[2024-10-16 23:19:49.032][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:return/chebi:smiles".
biodb.DEBUG[2024-10-16 23:19:49.034][self$setPropertyValue] Setting property "remote" to "TRUE".
biodb.DEBUG[2024-10-16 23:19:49.036][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2024-10-16 23:19:49.036][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2024-10-16 23:19:49.036][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2024-10-16 23:19:49.037][self$setPropertyValue] Setting property "scheduler.n" to "3".
biodb.DEBUG[2024-10-16 23:19:49.039][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-10-16 23:19:49.041][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-10-16 23:19:49.043][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2024-10-16 23:19:49.044][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-10-16 23:19:49.046][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-10-16 23:19:49.048][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2024-10-16 23:19:49.050][self$setPropertyValue] Setting property "urls" to "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2024-10-16 23:19:49.050][self$setPropertyValue] Setting property "urls" to "https://www.ebi.ac.uk/webservices/chebi/2.0/".
biodb.DEBUG[2024-10-16 23:19:49.051][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-10-16 23:19:49.053][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-10-16 23:19:49.055][self$setPropertyValue] Setting property "writable" to "FALSE".
biodb.DEBUG[2024-10-16 23:19:49.057][self$setPropertyValue] Setting property "xml.ns" to "https://www.ebi.ac.uk/webservices/chebi".
biodb.DEBUG[2024-10-16 23:19:49.057][self$setPropertyValue] Setting property "xml.ns" to "http://www.w3.org/2001/XMLSchema".
biodb.DEBUG[2024-10-16 23:19:49.066][self$getEntryFields()$define] Define field chebi.id.
biodb.DEBUG[2024-10-16 23:19:49.069][self$getEntryFields()$define] Define field kegg.compound.id.
biodb.DEBUG[2024-10-16 23:19:49.072][self$getEntryFields()$define] Define field n_stars.
biodb.DEBUG[2024-10-16 23:19:49.075][self$getEntryFields()$define] Define field molecular.mass.
biodb.DEBUG[2024-10-16 23:19:49.078][self$getEntryFields()$define] Define field inchi.
biodb.DEBUG[2024-10-16 23:19:49.081][self$getEntryFields()$define] Define field inchikey.
biodb.DEBUG[2024-10-16 23:19:49.117][super$initialize] Initialize connector chebi.
biodb.DEBUG[2024-10-16 23:19:49.120][super$initialize] Register connector chebi with the request scheduler
biodb.DEBUG[2024-10-16 23:19:49.126][private$bdb$getRequestScheduler()$re ...] Register connector chebi.
biodb.DEBUG[2024-10-16 23:19:49.132][private$addConnectorRules] Create new rule for URL "www.ebi.ac.uk" of connector "chebi".
biodb.DEBUG[2024-10-16 23:19:49.139][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2024-10-16 23:19:49.141][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2024-10-16 23:19:49.144][rule$addConnector] Connector "chebi" is already listed in rule "www.ebi.ac.uk".
biodb.DEBUG[2024-10-16 23:19:49.146][biodb$getFactory()$createConn] Creating new connector chebi for database class chebi .
biodb.INFO [2024-10-16 23:19:49.161][biodb::testThat]
biodb.INFO [2024-10-16 23:19:49.163][biodb::testThat] Running test function  test.entry.fields  (" Entry fields have a correct value ").
biodb.INFO [2024-10-16 23:19:49.165][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-10-16 23:19:49.167][biodb::testThat]
biodb.TRACE[2024-10-16 23:19:49.190][loadFileContents] Loaded 1 files from cache: [1]: "E:/biocbuild/bbs-3.19-bioc/R/library/biodbChebi/testref/entry-chebi-15440-content.xml".
biodb.DEBUG[2024-10-16 23:19:49.192][biodb$getFactory()$createEntryFromCo ...] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2024-10-16 23:19:49.204][biodb$getFactory()$createEntryFromCo ...] Parsing 1 ChEBI entries.
biodb.DEBUG[2024-10-16 23:19:49.212][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-10-16 23:19:49.214][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-10-16 23:19:49.216][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-10-16 23:19:49.234][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-10-16 23:19:49.235][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-10-16 23:19:49.236][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-10-16 23:19:49.237][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-10-16 23:19:49.246][ef$get] Asked field names are: accession.
biodb.TRACE[2024-10-16 23:19:49.247][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-10-16 23:19:49.248][ef$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:19:49.250][ef$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:19:49.252][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-10-16 23:19:49.264][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-10-16 23:19:49.265][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:19:49.267][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:19:49.268][ef$get] Asked field names are: charge.
biodb.TRACE[2024-10-16 23:19:49.269][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-10-16 23:19:49.271][ef$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:19:49.272][ef$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:19:49.296][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-10-16 23:19:49.298][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-10-16 23:19:49.299][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:19:49.300][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:19:49.302][ef$get] Asked field names are: formula.
biodb.TRACE[2024-10-16 23:19:49.303][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-10-16 23:19:49.304][ef$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:19:49.306][ef$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:19:49.309][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-10-16 23:19:49.311][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-10-16 23:19:49.313][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:19:49.315][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:19:49.317][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-10-16 23:19:49.319][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-10-16 23:19:49.321][ef$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:19:49.323][ef$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:19:49.326][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-10-16 23:19:49.328][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-10-16 23:19:49.330][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:19:49.331][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:19:49.333][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-10-16 23:19:49.334][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-10-16 23:19:49.335][ef$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:19:49.337][ef$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:19:49.339][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-10-16 23:19:49.341][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-10-16 23:19:49.343][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:19:49.344][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:19:49.345][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-10-16 23:19:49.346][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-10-16 23:19:49.347][ef$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:19:49.349][ef$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:19:49.350][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-10-16 23:19:49.351][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-10-16 23:19:49.353][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:19:49.354][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:19:49.355][ef$get] Asked field names are: mass.
biodb.TRACE[2024-10-16 23:19:49.356][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-10-16 23:19:49.357][ef$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:19:49.359][ef$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:19:49.360][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2024-10-16 23:19:49.361][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-10-16 23:19:49.363][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:19:49.364][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:19:49.365][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-10-16 23:19:49.366][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-10-16 23:19:49.367][ef$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:19:49.369][ef$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:19:49.370][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-10-16 23:19:49.371][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-10-16 23:19:49.373][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:19:49.374][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:19:49.375][ef$get] Asked field names are: name.
biodb.TRACE[2024-10-16 23:19:49.376][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-10-16 23:19:49.378][ef$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:19:49.379][ef$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:19:49.380][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-10-16 23:19:49.382][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-10-16 23:19:49.383][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:19:49.384][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:19:49.385][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-10-16 23:19:49.387][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-10-16 23:19:49.388][ef$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:19:49.430][ef$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:19:49.432][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2024-10-16 23:19:49.434][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-10-16 23:19:49.435][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:19:49.436][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:19:49.438][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-10-16 23:19:49.440][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-10-16 23:19:49.441][ef$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:19:49.443][ef$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:19:49.446][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-10-16 23:19:49.448][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-10-16 23:19:49.450][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:19:49.452][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:19:49.454][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-10-16 23:19:49.456][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-10-16 23:19:49.458][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:19:49.459][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:19:49.461][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-10-16 23:19:49.462][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-10-16 23:19:49.464][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:19:49.465][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:19:49.466][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-10-16 23:19:49.468][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-10-16 23:19:49.470][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:19:49.471][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:19:49.473][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-10-16 23:19:49.475][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-10-16 23:19:49.477][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:19:49.478][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:19:49.480][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-10-16 23:19:49.481][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-10-16 23:19:49.483][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:19:49.484][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:19:49.485][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-10-16 23:19:49.487][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-10-16 23:19:49.490][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:19:49.492][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:19:49.494][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-10-16 23:19:49.496][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-10-16 23:19:49.498][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:19:49.500][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:19:49.544][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-10-16 23:19:49.547][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-10-16 23:19:49.549][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:19:49.551][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:19:49.553][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-10-16 23:19:49.555][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-10-16 23:19:49.557][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:19:49.559][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:19:49.561][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-10-16 23:19:49.563][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-10-16 23:19:49.565][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:19:49.567][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-10-16 23:19:49.569][biodb$getFactory()$createEntryFromCo ...] Accession numbers: 15440.
biodb.TRACE[2024-10-16 23:19:49.580][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-10-16 23:19:49.581][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-10-16 23:19:49.583][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:19:49.584][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:19:49.585][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-10-16 23:19:49.587][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-10-16 23:19:49.589][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:19:49.591][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:19:49.627][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-10-16 23:19:49.630][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-10-16 23:19:49.632][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:19:49.634][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:19:49.640][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-10-16 23:19:49.641][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-10-16 23:19:49.642][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:19:49.644][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:19:49.645][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-10-16 23:19:49.646][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-10-16 23:19:49.648][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:19:49.649][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:19:49.651][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-10-16 23:19:49.652][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-10-16 23:19:49.653][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:19:49.654][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:19:49.656][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-10-16 23:19:49.657][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-10-16 23:19:49.658][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:19:49.659][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:19:49.661][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-10-16 23:19:49.662][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-10-16 23:19:49.664][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:19:49.665][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:19:49.666][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2024-10-16 23:19:49.668][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2024-10-16 23:19:49.669][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:19:49.671][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:19:49.672][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2024-10-16 23:19:49.673][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2024-10-16 23:19:49.675][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:19:49.676][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:19:49.703][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-10-16 23:19:49.705][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-10-16 23:19:49.708][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:19:49.710][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:19:49.731][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-10-16 23:19:49.734][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-10-16 23:19:49.736][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:19:49.738][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:19:49.750][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-10-16 23:19:49.752][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-10-16 23:19:49.753][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:19:49.754][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:19:49.755][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-10-16 23:19:49.757][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-10-16 23:19:49.758][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:19:49.759][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:19:49.760][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-10-16 23:19:49.762][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-10-16 23:19:49.763][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:19:49.764][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:19:49.769][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-10-16 23:19:49.770][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-10-16 23:19:49.772][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:19:49.773][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:19:49.774][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-10-16 23:19:49.775][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-10-16 23:19:49.776][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:19:49.778][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:19:49.779][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-10-16 23:19:49.781][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-10-16 23:19:49.783][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:19:49.784][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:19:49.787][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-10-16 23:19:49.789][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-10-16 23:19:49.791][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:19:49.792][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:19:49.794][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-10-16 23:19:49.795][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-10-16 23:19:49.796][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:19:49.797][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:19:49.799][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-10-16 23:19:49.800][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-10-16 23:19:49.801][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:19:49.802][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:19:49.821][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-10-16 23:19:49.823][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-10-16 23:19:49.824][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:19:49.825][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:19:49.826][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-10-16 23:19:49.828][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-10-16 23:19:49.829][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:19:49.830][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:19:49.831][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-10-16 23:19:49.832][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-10-16 23:19:49.833][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:19:49.835][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:19:49.836][ef$get] Asked field names are: accession.
biodb.TRACE[2024-10-16 23:19:49.837][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-10-16 23:19:49.838][ef$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:19:49.839][ef$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:19:49.841][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-10-16 23:19:49.842][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-10-16 23:19:49.843][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:19:49.844][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:19:49.856][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-10-16 23:19:49.858][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-10-16 23:19:49.859][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:19:49.860][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:19:49.867][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-10-16 23:19:49.869][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-10-16 23:19:49.870][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:19:49.871][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:19:49.872][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-10-16 23:19:49.873][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-10-16 23:19:49.875][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:19:49.876][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:19:49.877][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-10-16 23:19:49.878][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-10-16 23:19:49.879][ef$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:19:49.881][ef$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:19:49.882][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-10-16 23:19:49.883][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-10-16 23:19:49.884][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:19:49.885][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:19:49.897][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-10-16 23:19:49.898][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-10-16 23:19:49.900][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:19:49.901][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:19:49.902][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-10-16 23:19:49.904][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-10-16 23:19:49.905][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:19:49.906][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:19:49.907][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-10-16 23:19:49.909][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-10-16 23:19:49.910][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:19:49.911][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:19:49.912][ef$get] Asked field names are: name.
biodb.TRACE[2024-10-16 23:19:49.914][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-10-16 23:19:49.915][ef$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:19:49.916][ef$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:19:49.918][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-10-16 23:19:49.920][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-10-16 23:19:49.922][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:19:49.924][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:19:49.947][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-10-16 23:19:49.948][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-10-16 23:19:49.949][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:19:49.951][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:19:49.952][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-10-16 23:19:49.953][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-10-16 23:19:49.954][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:19:49.955][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:19:49.957][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-10-16 23:19:49.958][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-10-16 23:19:49.959][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:19:49.960][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:19:49.962][ef$get] Asked field names are: formula.
biodb.TRACE[2024-10-16 23:19:49.963][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-10-16 23:19:49.964][ef$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:19:49.965][ef$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:19:49.966][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-10-16 23:19:49.968][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-10-16 23:19:49.969][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:19:49.970][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:19:49.981][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-10-16 23:19:49.983][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-10-16 23:19:49.984][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:19:49.985][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:19:49.986][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-10-16 23:19:49.988][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-10-16 23:19:49.989][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:19:49.990][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:19:49.992][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-10-16 23:19:49.993][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-10-16 23:19:49.994][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:19:49.996][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:19:49.997][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-10-16 23:19:49.998][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-10-16 23:19:49.999][ef$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:19:50.000][ef$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:19:50.002][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-10-16 23:19:50.003][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-10-16 23:19:50.004][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:19:50.005][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:19:50.020][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-10-16 23:19:50.022][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-10-16 23:19:50.023][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:19:50.025][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:19:50.026][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-10-16 23:19:50.028][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-10-16 23:19:50.029][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:19:50.030][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:19:50.031][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-10-16 23:19:50.033][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-10-16 23:19:50.034][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:19:50.035][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:19:50.036][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-10-16 23:19:50.037][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-10-16 23:19:50.039][ef$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:19:50.040][ef$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:19:50.042][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-10-16 23:19:50.044][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-10-16 23:19:50.046][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:19:50.047][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:19:50.066][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-10-16 23:19:50.068][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-10-16 23:19:50.069][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:19:50.070][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:19:50.072][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-10-16 23:19:50.074][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-10-16 23:19:50.075][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:19:50.086][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:19:50.088][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-10-16 23:19:50.091][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-10-16 23:19:50.092][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:19:50.094][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:19:50.096][ef$get] Asked field names are: charge.
biodb.TRACE[2024-10-16 23:19:50.097][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-10-16 23:19:50.099][ef$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:19:50.100][ef$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:19:50.101][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-10-16 23:19:50.103][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-10-16 23:19:50.105][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:19:50.107][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:19:50.131][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-10-16 23:19:50.133][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-10-16 23:19:50.134][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:19:50.135][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:19:50.136][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-10-16 23:19:50.138][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-10-16 23:19:50.139][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:19:50.140][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:19:50.141][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-10-16 23:19:50.143][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-10-16 23:19:50.144][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:19:50.145][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:19:50.146][ef$get] Asked field names are: n.stars.
biodb.TRACE[2024-10-16 23:19:50.148][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-10-16 23:19:50.149][ef$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:19:50.150][ef$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:19:50.151][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-10-16 23:19:50.152][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-10-16 23:19:50.154][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:19:50.155][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:19:50.172][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-10-16 23:19:50.174][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-10-16 23:19:50.176][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:19:50.177][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:19:50.178][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-10-16 23:19:50.179][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-10-16 23:19:50.181][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:19:50.182][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:19:50.183][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-10-16 23:19:50.184][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-10-16 23:19:50.185][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:19:50.187][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:19:50.188][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-10-16 23:19:50.189][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-10-16 23:19:50.190][ef$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:19:50.191][ef$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:19:50.193][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-10-16 23:19:50.194][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-10-16 23:19:50.195][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:19:50.197][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:19:50.209][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-10-16 23:19:50.210][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-10-16 23:19:50.211][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:19:50.213][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:19:50.215][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-10-16 23:19:50.217][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-10-16 23:19:50.219][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:19:50.221][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:19:50.223][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-10-16 23:19:50.225][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-10-16 23:19:50.226][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:19:50.228][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:19:50.229][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-10-16 23:19:50.230][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-10-16 23:19:50.232][ef$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:19:50.233][ef$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:19:50.234][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-10-16 23:19:50.235][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-10-16 23:19:50.236][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:19:50.237][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:19:50.256][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-10-16 23:19:50.257][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-10-16 23:19:50.259][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:19:50.260][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:19:50.261][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-10-16 23:19:50.262][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-10-16 23:19:50.263][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:19:50.265][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:19:50.266][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-10-16 23:19:50.267][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-10-16 23:19:50.268][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:19:50.269][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:19:50.271][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-10-16 23:19:50.272][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-10-16 23:19:50.273][ef$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:19:50.274][ef$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:19:50.275][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-10-16 23:19:50.277][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-10-16 23:19:50.278][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:19:50.279][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:19:50.291][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-10-16 23:19:50.292][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-10-16 23:19:50.293][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:19:50.295][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:19:50.296][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-10-16 23:19:50.297][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-10-16 23:19:50.298][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:19:50.299][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:19:50.301][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-10-16 23:19:50.307][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-10-16 23:19:50.309][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:19:50.310][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:19:50.311][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-10-16 23:19:50.313][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-10-16 23:19:50.314][ef$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:19:50.315][ef$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:19:50.316][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-10-16 23:19:50.317][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-10-16 23:19:50.318][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:19:50.320][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:19:50.335][ef$get] Asked field names are: accession.
biodb.TRACE[2024-10-16 23:19:50.338][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-10-16 23:19:50.339][ef$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:19:50.341][ef$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:19:50.354][ef$get] Asked field names are: charge.
biodb.TRACE[2024-10-16 23:19:50.356][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-10-16 23:19:50.357][ef$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:19:50.358][ef$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:19:50.368][ef$get] Asked field names are: formula.
biodb.TRACE[2024-10-16 23:19:50.370][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-10-16 23:19:50.371][ef$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:19:50.372][ef$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:19:50.384][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-10-16 23:19:50.386][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-10-16 23:19:50.388][ef$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:19:50.390][ef$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:19:50.403][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-10-16 23:19:50.405][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-10-16 23:19:50.406][ef$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:19:50.407][ef$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:19:50.414][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-10-16 23:19:50.416][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-10-16 23:19:50.417][ef$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:19:50.418][ef$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:19:50.435][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-10-16 23:19:50.438][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-10-16 23:19:50.440][ef$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:19:50.442][ef$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:19:50.454][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-10-16 23:19:50.457][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-10-16 23:19:50.459][ef$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:19:50.461][ef$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:19:50.472][ef$get] Asked field names are: n.stars.
biodb.TRACE[2024-10-16 23:19:50.475][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-10-16 23:19:50.477][ef$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:19:50.479][ef$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:19:50.490][ef$get] Asked field names are: name.
biodb.TRACE[2024-10-16 23:19:50.492][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-10-16 23:19:50.494][ef$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:19:50.495][ef$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:19:50.504][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-10-16 23:19:50.506][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-10-16 23:19:50.507][ef$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:19:50.508][ef$get] fields variable is a list.
biodb.INFO [2024-10-16 23:19:50.531][biodb::testThat]
biodb.INFO [2024-10-16 23:19:50.533][biodb::testThat] Running test function  test.rt.unit  (" RT unit is defined when there is an RT value. ").
biodb.INFO [2024-10-16 23:19:50.535][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-10-16 23:19:50.537][biodb::testThat]
biodb.DEBUG[2024-10-16 23:19:50.550][private$loadEntries] Creating entries from ids [1]: "15440".
biodb.DEBUG[2024-10-16 23:19:50.558][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2024-10-16 23:19:50.568][cch$loadFileContent] Trying to load 1 files from cache: [1]: "15440".
biodb.TRACE[2024-10-16 23:19:50.571][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-10-16 23:19:50.575][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/15440.xml".
biodb.DEBUG[2024-10-16 23:19:50.577][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2024-10-16 23:19:50.608][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2024-10-16 23:19:50.610][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2024-10-16 23:19:50.612][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-10-16 23:19:50.613][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-10-16 23:19:50.614][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-10-16 23:19:50.626][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-10-16 23:19:50.627][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-10-16 23:19:50.628][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-10-16 23:19:50.629][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-10-16 23:19:50.633][ef$get] Asked field names are: accession.
biodb.TRACE[2024-10-16 23:19:50.634][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-10-16 23:19:50.635][ef$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:19:50.637][ef$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:19:50.638][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-10-16 23:19:50.639][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-10-16 23:19:50.641][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:19:50.642][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:19:50.666][ef$get] Asked field names are: charge.
biodb.TRACE[2024-10-16 23:19:50.669][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-10-16 23:19:50.671][ef$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:19:50.673][ef$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:19:50.675][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-10-16 23:19:50.677][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-10-16 23:19:50.679][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:19:50.682][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:19:50.684][ef$get] Asked field names are: formula.
biodb.TRACE[2024-10-16 23:19:50.686][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-10-16 23:19:50.688][ef$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:19:50.690][ef$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:19:50.692][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-10-16 23:19:50.694][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-10-16 23:19:50.696][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:19:50.698][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:19:50.700][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-10-16 23:19:50.702][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-10-16 23:19:50.704][ef$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:19:50.706][ef$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:19:50.708][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-10-16 23:19:50.710][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-10-16 23:19:50.712][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:19:50.714][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:19:50.716][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-10-16 23:19:50.718][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-10-16 23:19:50.720][ef$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:19:50.722][ef$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:19:50.724][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-10-16 23:19:50.727][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-10-16 23:19:50.728][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:19:50.730][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:19:50.733][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-10-16 23:19:50.735][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-10-16 23:19:50.736][ef$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:19:50.738][ef$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:19:50.741][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-10-16 23:19:50.743][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-10-16 23:19:50.745][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:19:50.747][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:19:50.749][ef$get] Asked field names are: mass.
biodb.TRACE[2024-10-16 23:19:50.751][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-10-16 23:19:50.753][ef$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:19:50.755][ef$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:19:50.757][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2024-10-16 23:19:50.759][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-10-16 23:19:50.761][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:19:50.763][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:19:50.765][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-10-16 23:19:50.767][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-10-16 23:19:50.769][ef$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:19:50.771][ef$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:19:50.774][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-10-16 23:19:50.776][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-10-16 23:19:50.778][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:19:50.780][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:19:50.782][ef$get] Asked field names are: name.
biodb.TRACE[2024-10-16 23:19:50.784][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-10-16 23:19:50.786][ef$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:19:50.788][ef$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:19:50.791][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-10-16 23:19:50.793][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-10-16 23:19:50.795][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:19:50.797][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:19:50.807][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-10-16 23:19:50.810][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-10-16 23:19:50.812][ef$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:19:50.814][ef$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:19:50.816][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2024-10-16 23:19:50.818][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-10-16 23:19:50.820][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:19:50.822][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:19:50.824][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-10-16 23:19:50.827][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-10-16 23:19:50.829][ef$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:19:50.830][ef$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:19:50.833][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-10-16 23:19:50.835][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-10-16 23:19:50.837][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:19:50.839][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:19:50.841][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-10-16 23:19:50.843][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-10-16 23:19:50.845][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:19:50.847][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:19:50.849][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-10-16 23:19:50.851][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-10-16 23:19:50.853][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:19:50.855][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:19:50.857][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-10-16 23:19:50.859][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-10-16 23:19:50.861][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:19:50.863][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:19:50.865][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-10-16 23:19:50.868][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-10-16 23:19:50.870][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:19:50.871][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:19:50.874][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-10-16 23:19:50.876][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-10-16 23:19:50.878][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:19:50.880][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:19:50.882][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-10-16 23:19:50.884][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-10-16 23:19:50.886][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:19:50.888][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:19:50.890][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-10-16 23:19:50.892][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-10-16 23:19:50.894][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:19:50.896][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:19:50.898][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-10-16 23:19:50.900][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-10-16 23:19:50.902][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:19:50.904][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:19:50.906][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-10-16 23:19:50.908][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-10-16 23:19:50.910][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:19:50.912][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:19:50.914][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-10-16 23:19:50.916][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-10-16 23:19:50.917][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:19:50.919][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-10-16 23:19:50.921][self$createEntryFromContent] Accession numbers: 15440.
biodb.TRACE[2024-10-16 23:19:50.923][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.
biodb.TRACE[2024-10-16 23:19:50.925][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.
biodb.TRACE[2024-10-16 23:19:50.927][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:19:50.929][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:19:50.931][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.min.
biodb.TRACE[2024-10-16 23:19:50.932][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.min.
biodb.TRACE[2024-10-16 23:19:50.933][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:19:50.935][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:19:50.936][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.max.
biodb.TRACE[2024-10-16 23:19:50.937][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.max.
biodb.TRACE[2024-10-16 23:19:50.938][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:19:50.940][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.INFO [2024-10-16 23:19:50.952][biodb::testThat]
biodb.INFO [2024-10-16 23:19:50.954][biodb::testThat] Running test function  test.searchForEntries  (" We can search for an entry by searchable field ").
biodb.INFO [2024-10-16 23:19:50.955][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-10-16 23:19:50.956][biodb::testThat]
biodb.TRACE[2024-10-16 23:19:50.960][ef$get] Asked field names are: name.
biodb.TRACE[2024-10-16 23:19:50.961][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-10-16 23:19:50.962][ef$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:19:50.963][ef$get] fields variable is a list.
biodb.DEBUG[2024-10-16 23:19:50.965][function(conn, opt)] Testing searchForEntries() with entry "15440" and field "name".
biodb.TRACE[2024-10-16 23:19:50.999][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-10-16 23:19:51.001][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-10-16 23:19:51.002][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:19:51.004][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:19:51.005][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-10-16 23:19:51.006][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-10-16 23:19:51.007][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:19:51.008][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:19:51.010][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-10-16 23:19:51.011][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-10-16 23:19:51.012][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:19:51.013][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-10-16 23:19:51.018][function(conn, opt)] With value "squalene".
biodb.DEBUG[2024-10-16 23:19:51.022][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/webservice?wsdl".
biodb.DEBUG[2024-10-16 23:19:51.046][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-10-16 23:19:51.062][cch$loadFileContent] Trying to load 1 files from cache: [1]: "1ad88a023c4ce2bc0629db4acebeee05".
biodb.TRACE[2024-10-16 23:19:51.064][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-10-16 23:19:51.066][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/1ad88a023c4ce2bc0629db4acebeee05.content".
biodb.DEBUG[2024-10-16 23:19:51.087][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=squalene&searchCategory=ALL NAMES&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2024-10-16 23:19:51.105][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-10-16 23:19:51.108][cch$loadFileContent] Trying to load 1 files from cache: [1]: "b9623d99e42a57d0f12e83910c2ffbf2".
biodb.TRACE[2024-10-16 23:19:51.110][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-10-16 23:19:51.127][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/b9623d99e42a57d0f12e83910c2ffbf2.content".
biodb.DEBUG[2024-10-16 23:19:51.131][function(conn, opt)] With found IDs [1]: "15440".
biodb.TRACE[2024-10-16 23:19:51.168][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-10-16 23:19:51.170][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-10-16 23:19:51.171][ef$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:19:51.173][ef$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:19:51.174][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-10-16 23:19:51.175][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-10-16 23:19:51.176][ef$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:19:51.178][ef$get] fields variable is a list.
biodb.INFO [2024-10-16 23:19:51.188][biodb::testThat]
biodb.INFO [2024-10-16 23:19:51.190][biodb::testThat] Running test function  test.searchByName  (" We can search for an entry by name. ").
biodb.INFO [2024-10-16 23:19:51.192][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-10-16 23:19:51.194][biodb::testThat]
biodb.TRACE[2024-10-16 23:19:51.251][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-10-16 23:19:51.254][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-10-16 23:19:51.256][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:19:51.259][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:19:51.260][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-10-16 23:19:51.263][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-10-16 23:19:51.264][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:19:51.266][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:19:51.267][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-10-16 23:19:51.269][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-10-16 23:19:51.270][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:19:51.272][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-10-16 23:19:51.344][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=squalene&searchCategory=ALL NAMES&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2024-10-16 23:19:51.348][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-10-16 23:19:51.350][cch$loadFileContent] Trying to load 1 files from cache: [1]: "b9623d99e42a57d0f12e83910c2ffbf2".
biodb.TRACE[2024-10-16 23:19:51.352][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-10-16 23:19:51.354][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/b9623d99e42a57d0f12e83910c2ffbf2.content".
biodb.INFO [2024-10-16 23:19:51.390][biodb::testThat]
biodb.INFO [2024-10-16 23:19:51.392][biodb::testThat] Running test function  testEntryLoading  (" We can load an entry from the database. ").
biodb.INFO [2024-10-16 23:19:51.394][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-10-16 23:19:51.396][biodb::testThat]
biodb.TRACE[2024-10-16 23:19:51.504][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-10-16 23:19:51.507][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-10-16 23:19:51.509][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:19:51.510][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:19:51.512][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-10-16 23:19:51.515][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-10-16 23:19:51.525][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:19:51.527][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:19:51.528][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-10-16 23:19:51.530][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-10-16 23:19:51.531][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:19:51.532][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:19:51.533][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-10-16 23:19:51.535][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-10-16 23:19:51.536][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:19:51.537][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:19:51.538][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-10-16 23:19:51.540][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-10-16 23:19:51.541][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:19:51.542][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:19:51.543][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-10-16 23:19:51.544][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-10-16 23:19:51.546][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:19:51.547][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:19:51.548][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-10-16 23:19:51.549][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-10-16 23:19:51.550][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:19:51.552][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:19:51.553][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-10-16 23:19:51.554][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-10-16 23:19:51.555][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:19:51.556][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:19:51.558][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2024-10-16 23:19:51.559][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2024-10-16 23:19:51.560][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:19:51.561][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:19:51.563][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2024-10-16 23:19:51.564][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2024-10-16 23:19:51.565][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:19:51.566][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:19:51.583][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-10-16 23:19:51.585][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-10-16 23:19:51.586][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:19:51.587][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:19:51.588][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-10-16 23:19:51.590][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-10-16 23:19:51.591][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:19:51.592][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:19:51.593][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-10-16 23:19:51.594][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-10-16 23:19:51.596][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:19:51.597][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:19:51.598][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-10-16 23:19:51.599][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-10-16 23:19:51.600][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:19:51.602][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:19:51.603][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-10-16 23:19:51.604][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-10-16 23:19:51.605][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:19:51.607][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:19:51.608][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-10-16 23:19:51.609][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-10-16 23:19:51.610][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:19:51.612][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:19:51.613][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-10-16 23:19:51.614][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-10-16 23:19:51.615][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:19:51.616][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:19:51.618][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-10-16 23:19:51.619][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-10-16 23:19:51.620][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:19:51.621][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:19:51.623][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2024-10-16 23:19:51.624][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2024-10-16 23:19:51.625][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:19:51.626][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:19:51.628][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2024-10-16 23:19:51.629][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2024-10-16 23:19:51.631][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:19:51.632][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.INFO [2024-10-16 23:19:51.693][biodb::testThat]
biodb.INFO [2024-10-16 23:19:51.695][biodb::testThat] Running test function  test.entry.page.url  (" We can get a URL pointing to the entry page. ").
biodb.INFO [2024-10-16 23:19:51.697][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-10-16 23:19:51.699][biodb::testThat]
biodb.INFO [2024-10-16 23:19:51.731][biodb::testThat]
biodb.INFO [2024-10-16 23:19:51.732][biodb::testThat] Running test function  test.entry.image.url  (" We can get a URL pointing to the entry image. ").
biodb.INFO [2024-10-16 23:19:51.734][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-10-16 23:19:51.735][biodb::testThat]
biodb.INFO [2024-10-16 23:19:51.750][biodb::testThat]
biodb.INFO [2024-10-16 23:19:51.752][biodb::testThat] Running test function  test.entry.page.url.download  (" The entry page URL can be downloaded. ").
biodb.INFO [2024-10-16 23:19:51.753][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-10-16 23:19:51.755][biodb::testThat]
biodb.DEBUG[2024-10-16 23:19:51.763][function(conn, opt)] Trying to download "https://www.ebi.ac.uk/chebi/searchId.do?chebiId=15440".
biodb.DEBUG[2024-10-16 23:19:52.453][getUrlContent] Use RCurl for downloading content of URL https://www.ebi.ac.uk/chebi/searchId.do?chebiId=15440.
biodb.INFO [2024-10-16 23:19:53.318][biodb::testThat]
biodb.INFO [2024-10-16 23:19:53.319][biodb::testThat] Running test function  test.entry.image.url.download  (" The entry image URL can be downloaded. ").
biodb.INFO [2024-10-16 23:19:53.320][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-10-16 23:19:53.321][biodb::testThat]
biodb.DEBUG[2024-10-16 23:19:53.739][getUrlContent] Use RCurl for downloading content of URL https://www.ebi.ac.uk/chebi/displayImage.do?defaultImage=true&imageIndex=0&chebiId=15440&dimensions=400.
biodb.TRACE[2024-10-16 23:19:54.775][ef$get] Asked field names are: name.
biodb.TRACE[2024-10-16 23:19:54.778][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-10-16 23:19:54.780][ef$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:19:54.782][ef$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:19:54.784][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-10-16 23:19:54.786][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-10-16 23:19:54.788][ef$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:19:54.790][ef$get] fields variable is a list.
biodb.INFO [2024-10-16 23:19:54.794][biodb::testThat]
biodb.INFO [2024-10-16 23:19:54.796][biodb::testThat] Running test function  test.searchCompound  (" We can search for a compound ").
biodb.INFO [2024-10-16 23:19:54.798][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-10-16 23:19:54.800][biodb::testThat]
biodb.TRACE[2024-10-16 23:19:54.819][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-10-16 23:19:54.821][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-10-16 23:19:54.822][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:19:54.824][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:19:54.827][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-10-16 23:19:54.829][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-10-16 23:19:54.831][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:19:54.833][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:19:54.835][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-10-16 23:19:54.837][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-10-16 23:19:54.839][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:19:54.841][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-10-16 23:19:54.996][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=squalene&searchCategory=ALL NAMES&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2024-10-16 23:19:55.002][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-10-16 23:19:55.005][cch$loadFileContent] Trying to load 1 files from cache: [1]: "b9623d99e42a57d0f12e83910c2ffbf2".
biodb.TRACE[2024-10-16 23:19:55.008][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-10-16 23:19:55.012][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/b9623d99e42a57d0f12e83910c2ffbf2.content".
biodb.DEBUG[2024-10-16 23:19:55.122][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=squalene&searchCategory=ALL NAMES&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2024-10-16 23:19:55.129][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-10-16 23:19:55.132][cch$loadFileContent] Trying to load 1 files from cache: [1]: "b9623d99e42a57d0f12e83910c2ffbf2".
biodb.TRACE[2024-10-16 23:19:55.144][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-10-16 23:19:55.148][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/b9623d99e42a57d0f12e83910c2ffbf2.content".
biodb.TRACE[2024-10-16 23:19:55.298][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2024-10-16 23:19:55.382][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2024-10-16 23:19:55.386][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:19:55.388][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:19:55.400][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-10-16 23:19:55.403][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-10-16 23:19:55.405][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:19:55.407][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:19:55.409][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-10-16 23:19:55.412][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-10-16 23:19:55.414][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:19:55.416][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:19:55.419][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-10-16 23:19:55.421][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-10-16 23:19:55.423][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:19:55.425][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:19:55.429][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-10-16 23:19:55.431][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-10-16 23:19:55.433][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:19:55.435][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:19:55.437][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-10-16 23:19:55.439][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-10-16 23:19:55.441][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:19:55.443][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-10-16 23:19:55.456][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.72*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2024-10-16 23:19:55.462][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-10-16 23:19:55.465][cch$loadFileContent] Trying to load 1 files from cache: [1]: "dabc9e8530050c4ceebbaec76743bcf1".
biodb.TRACE[2024-10-16 23:19:55.468][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-10-16 23:19:55.492][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/dabc9e8530050c4ceebbaec76743bcf1.content".
biodb.DEBUG[2024-10-16 23:19:55.497][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-10-16 23:19:55.542][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-10-16 23:19:55.544][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-10-16 23:19:55.557][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-10-16 23:19:55.560][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-10-16 23:19:55.561][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-10-16 23:19:55.563][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-10-16 23:19:55.566][private$loadEntries] Creating entries from ids [1]: "192288".
biodb.DEBUG[2024-10-16 23:19:55.658][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2024-10-16 23:19:55.661][cch$loadFileContent] Trying to load 1 files from cache: [1]: "192288".
biodb.TRACE[2024-10-16 23:19:55.665][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-10-16 23:19:55.686][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/192288.xml".
biodb.DEBUG[2024-10-16 23:19:55.689][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2024-10-16 23:19:55.691][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2024-10-16 23:19:55.694][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2024-10-16 23:19:55.697][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-10-16 23:19:55.699][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-10-16 23:19:55.701][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-10-16 23:19:55.714][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-10-16 23:19:55.716][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-10-16 23:19:55.718][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-10-16 23:19:55.721][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-10-16 23:19:55.725][ef$get] Asked field names are: accession.
biodb.TRACE[2024-10-16 23:19:55.727][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-10-16 23:19:55.729][ef$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:19:55.731][ef$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:19:55.734][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-10-16 23:19:55.736][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-10-16 23:19:55.738][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:19:55.740][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:19:55.742][ef$get] Asked field names are: charge.
biodb.TRACE[2024-10-16 23:19:55.745][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-10-16 23:19:55.746][ef$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:19:55.748][ef$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:19:55.751][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-10-16 23:19:55.753][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-10-16 23:19:55.755][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:19:55.757][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:19:55.759][ef$get] Asked field names are: formula.
biodb.TRACE[2024-10-16 23:19:55.761][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-10-16 23:19:55.763][ef$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:19:55.765][ef$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:19:55.768][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-10-16 23:19:55.770][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-10-16 23:19:55.772][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:19:55.774][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:19:55.777][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-10-16 23:19:55.779][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-10-16 23:19:55.781][ef$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:19:55.783][ef$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:19:55.785][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-10-16 23:19:55.788][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-10-16 23:19:55.790][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:19:55.791][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:19:55.794][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-10-16 23:19:55.796][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-10-16 23:19:55.798][ef$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:19:55.800][ef$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:19:55.802][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-10-16 23:19:55.804][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-10-16 23:19:55.806][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:19:55.808][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:19:55.810][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-10-16 23:19:55.821][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-10-16 23:19:55.823][ef$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:19:55.826][ef$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:19:55.828][ef$get] Asked field names are: mass.
biodb.TRACE[2024-10-16 23:19:55.830][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-10-16 23:19:55.833][ef$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:19:55.835][ef$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:19:55.837][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2024-10-16 23:19:55.839][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-10-16 23:19:55.841][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:19:55.843][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:19:55.845][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-10-16 23:19:55.847][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-10-16 23:19:55.849][ef$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:19:55.851][ef$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:19:55.853][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-10-16 23:19:55.856][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-10-16 23:19:55.857][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:19:55.859][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:19:55.862][ef$get] Asked field names are: name.
biodb.TRACE[2024-10-16 23:19:55.864][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-10-16 23:19:55.866][ef$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:19:55.868][ef$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:19:55.871][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-10-16 23:19:55.873][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-10-16 23:19:55.875][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:19:55.877][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:19:55.879][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-10-16 23:19:55.881][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-10-16 23:19:55.883][ef$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:19:55.885][ef$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:19:55.888][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2024-10-16 23:19:55.890][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-10-16 23:19:55.892][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:19:55.894][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:19:55.896][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-10-16 23:19:55.898][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-10-16 23:19:55.900][ef$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:19:55.902][ef$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:19:55.905][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-10-16 23:19:55.907][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-10-16 23:19:55.909][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:19:55.911][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:19:55.914][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-10-16 23:19:55.916][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-10-16 23:19:55.918][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:19:55.920][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:19:55.922][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-10-16 23:19:55.924][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-10-16 23:19:55.927][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:19:55.928][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:19:55.931][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-10-16 23:19:55.933][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-10-16 23:19:55.934][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:19:55.936][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:19:55.938][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-10-16 23:19:55.941][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-10-16 23:19:55.943][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:19:55.945][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:19:55.947][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-10-16 23:19:55.950][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-10-16 23:19:55.951][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:19:55.953][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:19:55.956][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-10-16 23:19:55.959][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-10-16 23:19:55.961][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:19:55.963][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:19:55.965][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-10-16 23:19:55.968][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-10-16 23:19:55.970][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:19:55.972][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:19:55.974][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-10-16 23:19:55.976][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-10-16 23:19:55.978][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:19:55.980][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:19:55.982][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-10-16 23:19:55.985][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-10-16 23:19:55.987][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:19:55.989][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:19:55.991][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-10-16 23:19:55.993][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-10-16 23:19:55.995][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:19:55.997][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-10-16 23:19:55.999][self$createEntryFromContent] Accession numbers: 192288.
biodb.TRACE[2024-10-16 23:19:56.025][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-10-16 23:19:56.027][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-10-16 23:19:56.030][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:19:56.032][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:19:56.034][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-10-16 23:19:56.036][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-10-16 23:19:56.038][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:19:56.040][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:19:56.042][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-10-16 23:19:56.044][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-10-16 23:19:56.046][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:19:56.048][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-10-16 23:19:56.053][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.73*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2024-10-16 23:19:56.063][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-10-16 23:19:56.066][cch$loadFileContent] Trying to load 1 files from cache: [1]: "41b7f9723242a79cfe14bebd91dbb5b6".
biodb.TRACE[2024-10-16 23:19:56.069][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-10-16 23:19:56.090][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/41b7f9723242a79cfe14bebd91dbb5b6.content".
biodb.DEBUG[2024-10-16 23:19:56.115][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-10-16 23:19:56.117][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-10-16 23:19:56.119][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-10-16 23:19:56.330][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-10-16 23:19:56.334][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-10-16 23:19:56.336][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-10-16 23:19:56.339][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-10-16 23:19:56.342][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-10-16 23:19:56.347][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-10-16 23:19:56.349][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:19:56.351][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:19:56.353][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-10-16 23:19:56.355][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-10-16 23:19:56.357][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:19:56.359][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:19:56.525][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-10-16 23:19:56.530][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-10-16 23:19:56.534][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:19:56.537][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-10-16 23:19:56.540][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-10-16 23:19:56.542][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-10-16 23:19:56.544][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-10-16 23:19:56.562][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-10-16 23:19:56.564][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-10-16 23:19:56.566][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-10-16 23:19:56.568][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-10-16 23:19:56.571][private$loadEntries] Creating entries from ids [1]: "209892".
biodb.DEBUG[2024-10-16 23:19:56.573][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2024-10-16 23:19:56.577][cch$loadFileContent] Trying to load 1 files from cache: [1]: "209892".
biodb.TRACE[2024-10-16 23:19:56.581][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-10-16 23:19:56.600][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/209892.xml".
biodb.DEBUG[2024-10-16 23:19:56.603][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2024-10-16 23:19:56.606][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2024-10-16 23:19:56.609][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2024-10-16 23:19:56.846][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-10-16 23:19:56.849][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-10-16 23:19:56.851][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-10-16 23:19:56.888][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-10-16 23:19:56.890][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-10-16 23:19:56.892][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-10-16 23:19:56.894][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-10-16 23:19:56.898][ef$get] Asked field names are: accession.
biodb.TRACE[2024-10-16 23:19:56.900][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-10-16 23:19:56.902][ef$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:19:56.904][ef$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:19:56.906][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-10-16 23:19:56.908][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-10-16 23:19:56.910][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:19:56.912][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:19:56.914][ef$get] Asked field names are: charge.
biodb.TRACE[2024-10-16 23:19:56.916][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-10-16 23:19:56.918][ef$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:19:56.920][ef$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:19:56.923][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-10-16 23:19:56.925][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-10-16 23:19:56.927][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:19:56.929][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:19:56.931][ef$get] Asked field names are: formula.
biodb.TRACE[2024-10-16 23:19:56.933][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-10-16 23:19:56.935][ef$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:19:56.937][ef$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:19:56.940][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-10-16 23:19:56.942][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-10-16 23:19:56.944][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:19:56.945][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:19:56.948][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-10-16 23:19:56.950][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-10-16 23:19:56.952][ef$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:19:56.954][ef$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:19:56.956][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-10-16 23:19:56.958][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-10-16 23:19:56.960][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:19:56.962][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:19:56.964][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-10-16 23:19:56.966][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-10-16 23:19:56.968][ef$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:19:56.970][ef$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:19:56.972][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-10-16 23:19:56.974][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-10-16 23:19:56.977][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:19:56.979][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:19:56.981][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-10-16 23:19:56.983][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-10-16 23:19:56.985][ef$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:19:56.986][ef$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:19:56.989][ef$get] Asked field names are: mass.
biodb.TRACE[2024-10-16 23:19:56.991][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-10-16 23:19:56.993][ef$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:19:56.994][ef$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:19:56.997][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2024-10-16 23:19:56.999][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-10-16 23:19:57.001][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:19:57.003][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:19:57.006][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-10-16 23:19:57.008][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-10-16 23:19:57.010][ef$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:19:57.012][ef$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:19:57.014][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-10-16 23:19:57.016][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-10-16 23:19:57.018][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:19:57.020][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:19:57.022][ef$get] Asked field names are: name.
biodb.TRACE[2024-10-16 23:19:57.024][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-10-16 23:19:57.026][ef$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:19:57.027][ef$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:19:57.030][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-10-16 23:19:57.032][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-10-16 23:19:57.034][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:19:57.036][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:19:57.038][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-10-16 23:19:57.041][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-10-16 23:19:57.042][ef$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:19:57.044][ef$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:19:57.047][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2024-10-16 23:19:57.049][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-10-16 23:19:57.051][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:19:57.053][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:19:57.055][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-10-16 23:19:57.057][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-10-16 23:19:57.059][ef$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:19:57.061][ef$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:19:57.064][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-10-16 23:19:57.067][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-10-16 23:19:57.069][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:19:57.072][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:19:57.084][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-10-16 23:19:57.087][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-10-16 23:19:57.089][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:19:57.091][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:19:57.094][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-10-16 23:19:57.096][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-10-16 23:19:57.098][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:19:57.100][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:19:57.102][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-10-16 23:19:57.104][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-10-16 23:19:57.107][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:19:57.109][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:19:57.112][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-10-16 23:19:57.114][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-10-16 23:19:57.116][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:19:57.118][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:19:57.120][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-10-16 23:19:57.123][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-10-16 23:19:57.125][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:19:57.127][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:19:57.129][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-10-16 23:19:57.131][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-10-16 23:19:57.133][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:19:57.134][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:19:57.137][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-10-16 23:19:57.139][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-10-16 23:19:57.141][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:19:57.143][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:19:57.145][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-10-16 23:19:57.147][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-10-16 23:19:57.149][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:19:57.151][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:19:57.153][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-10-16 23:19:57.156][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-10-16 23:19:57.157][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:19:57.159][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:19:57.161][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-10-16 23:19:57.164][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-10-16 23:19:57.166][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:19:57.168][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-10-16 23:19:57.170][self$createEntryFromContent] Accession numbers: 209892.
biodb.TRACE[2024-10-16 23:19:57.172][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-10-16 23:19:57.175][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-10-16 23:19:57.177][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:19:57.178][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:19:57.181][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-10-16 23:19:57.183][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-10-16 23:19:57.185][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:19:57.187][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:19:57.189][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-10-16 23:19:57.191][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-10-16 23:19:57.193][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:19:57.197][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-10-16 23:19:57.415][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=squalene&searchCategory=ALL NAMES&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2024-10-16 23:19:57.426][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-10-16 23:19:57.429][cch$loadFileContent] Trying to load 1 files from cache: [1]: "b9623d99e42a57d0f12e83910c2ffbf2".
biodb.TRACE[2024-10-16 23:19:57.432][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-10-16 23:19:57.436][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/b9623d99e42a57d0f12e83910c2ffbf2.content".
biodb.DEBUG[2024-10-16 23:19:57.442][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-10-16 23:19:57.444][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-10-16 23:19:57.446][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-10-16 23:19:57.459][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-10-16 23:19:57.461][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-10-16 23:19:57.463][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-10-16 23:19:57.465][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-10-16 23:19:57.468][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-10-16 23:19:57.470][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-10-16 23:19:57.472][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:19:57.483][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:19:57.485][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-10-16 23:19:57.488][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-10-16 23:19:57.490][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:19:57.492][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:19:57.494][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-10-16 23:19:57.496][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-10-16 23:19:57.498][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:19:57.500][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-10-16 23:19:57.502][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-10-16 23:19:57.503][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-10-16 23:19:57.505][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-10-16 23:19:57.516][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-10-16 23:19:57.518][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-10-16 23:19:57.520][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-10-16 23:19:57.521][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-10-16 23:19:57.524][private$loadEntries] Creating entries from ids [1]: "26747".
biodb.DEBUG[2024-10-16 23:19:57.526][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2024-10-16 23:19:57.529][cch$loadFileContent] Trying to load 1 files from cache: [1]: "26747".
biodb.TRACE[2024-10-16 23:19:57.532][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-10-16 23:19:57.551][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/26747.xml".
biodb.DEBUG[2024-10-16 23:19:57.554][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2024-10-16 23:19:57.557][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2024-10-16 23:19:57.559][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2024-10-16 23:19:57.563][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-10-16 23:19:57.565][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-10-16 23:19:57.567][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-10-16 23:19:57.650][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-10-16 23:19:57.652][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-10-16 23:19:57.654][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-10-16 23:19:57.657][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-10-16 23:19:57.662][ef$get] Asked field names are: accession.
biodb.TRACE[2024-10-16 23:19:57.665][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-10-16 23:19:57.667][ef$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:19:57.669][ef$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:19:57.672][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-10-16 23:19:57.674][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-10-16 23:19:57.676][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:19:57.678][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:19:57.681][ef$get] Asked field names are: charge.
biodb.TRACE[2024-10-16 23:19:57.683][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-10-16 23:19:57.685][ef$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:19:57.687][ef$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:19:57.690][ef$get] Asked field names are: formula.
biodb.TRACE[2024-10-16 23:19:57.692][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-10-16 23:19:57.694][ef$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:19:57.696][ef$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:19:57.699][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-10-16 23:19:57.717][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-10-16 23:19:57.720][ef$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:19:57.723][ef$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:19:57.726][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-10-16 23:19:57.728][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-10-16 23:19:57.731][ef$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:19:57.733][ef$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:19:57.736][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-10-16 23:19:57.738][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-10-16 23:19:57.740][ef$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:19:57.743][ef$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:19:57.746][ef$get] Asked field names are: mass.
biodb.TRACE[2024-10-16 23:19:57.749][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-10-16 23:19:57.751][ef$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:19:57.757][ef$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:19:57.760][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-10-16 23:19:57.762][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-10-16 23:19:57.764][ef$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:19:57.766][ef$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:19:57.769][ef$get] Asked field names are: name.
biodb.TRACE[2024-10-16 23:19:57.771][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-10-16 23:19:57.773][ef$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:19:57.775][ef$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:19:57.778][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-10-16 23:19:57.780][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-10-16 23:19:57.782][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:19:57.784][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:19:57.787][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-10-16 23:19:57.789][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-10-16 23:19:57.791][ef$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:19:57.793][ef$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:19:57.795][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2024-10-16 23:19:57.798][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-10-16 23:19:57.809][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:19:57.811][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:19:57.814][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-10-16 23:19:57.816][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-10-16 23:19:57.818][ef$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:19:57.820][ef$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:19:57.823][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-10-16 23:19:57.825][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-10-16 23:19:57.827][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:19:57.829][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:19:57.831][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-10-16 23:19:57.833][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-10-16 23:19:57.835][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:19:57.837][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:19:57.839][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-10-16 23:19:57.841][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-10-16 23:19:57.843][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:19:57.845][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:19:57.847][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-10-16 23:19:57.849][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-10-16 23:19:57.851][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:19:57.853][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:19:57.855][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-10-16 23:19:57.857][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-10-16 23:19:57.859][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:19:57.861][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:19:57.863][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-10-16 23:19:57.865][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-10-16 23:19:57.867][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:19:57.869][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:19:57.871][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-10-16 23:19:57.873][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-10-16 23:19:57.875][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:19:57.876][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:19:57.879][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-10-16 23:19:57.881][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-10-16 23:19:57.883][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:19:57.885][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:19:57.887][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-10-16 23:19:57.889][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-10-16 23:19:57.891][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:19:57.893][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:19:57.895][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-10-16 23:19:57.897][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-10-16 23:19:57.899][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:19:57.901][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-10-16 23:19:57.903][self$createEntryFromContent] Accession numbers: 26747.
biodb.TRACE[2024-10-16 23:19:57.905][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-10-16 23:19:57.907][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-10-16 23:19:57.909][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:19:57.911][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:19:57.913][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-10-16 23:19:57.915][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-10-16 23:19:57.917][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:19:57.919][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:19:57.921][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-10-16 23:19:57.923][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-10-16 23:19:57.925][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:19:57.927][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:19:57.929][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-10-16 23:19:57.931][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-10-16 23:19:57.933][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:19:57.935][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:19:57.937][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-10-16 23:19:57.940][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-10-16 23:19:57.942][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:19:57.944][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-10-16 23:19:57.947][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-10-16 23:19:57.949][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-10-16 23:19:57.951][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-10-16 23:19:57.962][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-10-16 23:19:57.965][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-10-16 23:19:57.967][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-10-16 23:19:57.970][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-10-16 23:19:57.973][private$loadEntries] Creating entries from ids [1]: "59285".
biodb.DEBUG[2024-10-16 23:19:57.975][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2024-10-16 23:19:57.980][cch$loadFileContent] Trying to load 1 files from cache: [1]: "59285".
biodb.TRACE[2024-10-16 23:19:57.985][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-10-16 23:19:58.005][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/59285.xml".
biodb.DEBUG[2024-10-16 23:19:58.008][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2024-10-16 23:19:58.011][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2024-10-16 23:19:58.013][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2024-10-16 23:19:58.145][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-10-16 23:19:58.147][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-10-16 23:19:58.149][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-10-16 23:19:58.206][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-10-16 23:19:58.208][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-10-16 23:19:58.210][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-10-16 23:19:58.341][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-10-16 23:19:58.346][ef$get] Asked field names are: accession.
biodb.TRACE[2024-10-16 23:19:58.348][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-10-16 23:19:58.350][ef$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:19:58.352][ef$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:19:58.355][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-10-16 23:19:58.357][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-10-16 23:19:58.361][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:19:58.364][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:19:58.370][ef$get] Asked field names are: charge.
biodb.TRACE[2024-10-16 23:19:58.373][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-10-16 23:19:58.375][ef$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:19:58.377][ef$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:19:58.380][ef$get] Asked field names are: formula.
biodb.TRACE[2024-10-16 23:19:58.382][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-10-16 23:19:58.384][ef$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:19:58.386][ef$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:19:58.389][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-10-16 23:19:58.391][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-10-16 23:19:58.392][ef$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:19:58.394][ef$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:19:58.397][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-10-16 23:19:58.399][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-10-16 23:19:58.401][ef$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:19:58.402][ef$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:19:58.405][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-10-16 23:19:58.407][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-10-16 23:19:58.409][ef$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:19:58.410][ef$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:19:58.413][ef$get] Asked field names are: mass.
biodb.TRACE[2024-10-16 23:19:58.415][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-10-16 23:19:58.417][ef$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:19:58.418][ef$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:19:58.421][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-10-16 23:19:58.423][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-10-16 23:19:58.424][ef$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:19:58.426][ef$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:19:58.429][ef$get] Asked field names are: name.
biodb.TRACE[2024-10-16 23:19:58.431][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-10-16 23:19:58.432][ef$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:19:58.434][ef$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:19:58.437][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-10-16 23:19:58.439][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-10-16 23:19:58.441][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:19:58.443][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:19:58.445][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-10-16 23:19:58.448][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-10-16 23:19:58.450][ef$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:19:58.452][ef$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:19:58.455][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2024-10-16 23:19:58.457][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-10-16 23:19:58.459][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:19:58.461][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:19:58.463][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-10-16 23:19:58.465][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-10-16 23:19:58.467][ef$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:19:58.469][ef$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:19:58.472][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-10-16 23:19:58.474][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-10-16 23:19:58.476][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:19:58.478][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:19:58.480][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-10-16 23:19:58.482][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-10-16 23:19:58.484][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:19:58.486][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:19:58.488][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-10-16 23:19:58.490][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-10-16 23:19:58.492][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:19:58.494][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:19:58.496][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-10-16 23:19:58.498][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-10-16 23:19:58.500][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:19:58.502][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:19:58.504][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-10-16 23:19:58.506][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-10-16 23:19:58.508][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:19:58.510][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:19:58.512][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-10-16 23:19:58.514][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-10-16 23:19:58.516][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:19:58.518][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:19:58.520][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-10-16 23:19:58.522][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-10-16 23:19:58.524][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:19:58.534][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:19:58.537][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-10-16 23:19:58.540][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-10-16 23:19:58.542][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:19:58.544][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:19:58.546][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-10-16 23:19:58.549][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-10-16 23:19:58.551][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:19:58.553][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:19:58.555][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-10-16 23:19:58.557][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-10-16 23:19:58.559][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:19:58.561][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-10-16 23:19:58.563][self$createEntryFromContent] Accession numbers: 59285.
biodb.TRACE[2024-10-16 23:19:58.565][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-10-16 23:19:58.567][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-10-16 23:19:58.569][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:19:58.571][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:19:58.573][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-10-16 23:19:58.575][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-10-16 23:19:58.577][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:19:58.579][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:19:58.582][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-10-16 23:19:58.584][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-10-16 23:19:58.586][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:19:58.588][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:19:58.590][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-10-16 23:19:58.592][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-10-16 23:19:58.594][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:19:58.596][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:19:58.598][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-10-16 23:19:58.600][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-10-16 23:19:58.602][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:19:58.604][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-10-16 23:19:58.606][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-10-16 23:19:58.608][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-10-16 23:19:58.610][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-10-16 23:19:58.664][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-10-16 23:19:58.666][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-10-16 23:19:58.668][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-10-16 23:19:58.670][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-10-16 23:19:58.673][private$loadEntries] Creating entries from ids [1]: "75174".
biodb.DEBUG[2024-10-16 23:19:58.675][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2024-10-16 23:19:58.678][cch$loadFileContent] Trying to load 1 files from cache: [1]: "75174".
biodb.TRACE[2024-10-16 23:19:58.682][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-10-16 23:19:58.702][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/75174.xml".
biodb.DEBUG[2024-10-16 23:19:58.705][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2024-10-16 23:19:58.788][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2024-10-16 23:19:58.792][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2024-10-16 23:19:58.795][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-10-16 23:19:58.797][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-10-16 23:19:58.800][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-10-16 23:19:58.898][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-10-16 23:19:58.904][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-10-16 23:19:58.906][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-10-16 23:19:58.909][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-10-16 23:19:58.914][ef$get] Asked field names are: accession.
biodb.TRACE[2024-10-16 23:19:58.916][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-10-16 23:19:58.918][ef$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:19:58.920][ef$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:19:58.923][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-10-16 23:19:58.927][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-10-16 23:19:58.929][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:19:58.985][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:19:58.988][ef$get] Asked field names are: charge.
biodb.TRACE[2024-10-16 23:19:58.991][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-10-16 23:19:58.993][ef$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:19:58.995][ef$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:19:58.998][ef$get] Asked field names are: formula.
biodb.TRACE[2024-10-16 23:19:59.000][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-10-16 23:19:59.003][ef$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:19:59.005][ef$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:19:59.007][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-10-16 23:19:59.010][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-10-16 23:19:59.012][ef$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:19:59.014][ef$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:19:59.016][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-10-16 23:19:59.018][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-10-16 23:19:59.020][ef$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:19:59.022][ef$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:19:59.025][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-10-16 23:19:59.027][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-10-16 23:19:59.029][ef$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:19:59.039][ef$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:19:59.042][ef$get] Asked field names are: mass.
biodb.TRACE[2024-10-16 23:19:59.045][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-10-16 23:19:59.047][ef$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:19:59.049][ef$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:19:59.052][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-10-16 23:19:59.054][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-10-16 23:19:59.056][ef$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:19:59.058][ef$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:19:59.061][ef$get] Asked field names are: name.
biodb.TRACE[2024-10-16 23:19:59.063][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-10-16 23:19:59.065][ef$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:19:59.066][ef$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:19:59.070][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-10-16 23:19:59.072][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-10-16 23:19:59.074][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:19:59.076][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:19:59.078][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-10-16 23:19:59.080][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-10-16 23:19:59.082][ef$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:19:59.084][ef$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:19:59.087][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2024-10-16 23:19:59.089][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-10-16 23:19:59.091][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:19:59.094][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:19:59.096][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-10-16 23:19:59.101][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-10-16 23:19:59.103][ef$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:19:59.105][ef$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:19:59.108][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-10-16 23:19:59.110][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-10-16 23:19:59.112][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:19:59.114][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:19:59.116][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-10-16 23:19:59.119][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-10-16 23:19:59.121][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:19:59.123][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:19:59.127][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-10-16 23:19:59.129][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-10-16 23:19:59.132][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:19:59.134][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:19:59.137][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-10-16 23:19:59.140][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-10-16 23:19:59.142][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:19:59.144][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:19:59.146][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-10-16 23:19:59.149][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-10-16 23:19:59.151][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:19:59.153][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:19:59.155][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-10-16 23:19:59.157][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-10-16 23:19:59.159][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:19:59.161][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:19:59.163][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-10-16 23:19:59.166][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-10-16 23:19:59.168][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:19:59.170][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:19:59.172][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-10-16 23:19:59.174][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-10-16 23:19:59.176][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:19:59.178][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:19:59.180][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-10-16 23:19:59.182][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-10-16 23:19:59.184][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:19:59.186][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:19:59.188][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-10-16 23:19:59.190][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-10-16 23:19:59.192][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:19:59.194][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-10-16 23:19:59.196][self$createEntryFromContent] Accession numbers: 75174.
biodb.TRACE[2024-10-16 23:19:59.198][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-10-16 23:19:59.200][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-10-16 23:19:59.202][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:19:59.204][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:19:59.206][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-10-16 23:19:59.209][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-10-16 23:19:59.211][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:19:59.213][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:19:59.216][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-10-16 23:19:59.218][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-10-16 23:19:59.221][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:19:59.223][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:19:59.225][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-10-16 23:19:59.227][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-10-16 23:19:59.230][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:19:59.232][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:19:59.235][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-10-16 23:19:59.237][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-10-16 23:19:59.240][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:19:59.245][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-10-16 23:19:59.248][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-10-16 23:19:59.262][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-10-16 23:19:59.264][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-10-16 23:19:59.277][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-10-16 23:19:59.279][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-10-16 23:19:59.281][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-10-16 23:19:59.283][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-10-16 23:19:59.285][private$loadEntries] Creating entries from ids [1]: "15441".
biodb.DEBUG[2024-10-16 23:19:59.287][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2024-10-16 23:19:59.290][cch$loadFileContent] Trying to load 1 files from cache: [1]: "15441".
biodb.TRACE[2024-10-16 23:19:59.293][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-10-16 23:19:59.315][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/15441.xml".
biodb.DEBUG[2024-10-16 23:19:59.318][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2024-10-16 23:19:59.321][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2024-10-16 23:19:59.324][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2024-10-16 23:19:59.327][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-10-16 23:19:59.329][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-10-16 23:19:59.331][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-10-16 23:19:59.371][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-10-16 23:19:59.373][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-10-16 23:19:59.375][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-10-16 23:19:59.377][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-10-16 23:19:59.384][ef$get] Asked field names are: accession.
biodb.TRACE[2024-10-16 23:19:59.387][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-10-16 23:19:59.389][ef$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:19:59.391][ef$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:19:59.394][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-10-16 23:19:59.396][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-10-16 23:19:59.398][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:19:59.400][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:19:59.403][ef$get] Asked field names are: charge.
biodb.TRACE[2024-10-16 23:19:59.405][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-10-16 23:19:59.407][ef$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:19:59.409][ef$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:19:59.412][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-10-16 23:19:59.414][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-10-16 23:19:59.416][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:19:59.418][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:19:59.421][ef$get] Asked field names are: formula.
biodb.TRACE[2024-10-16 23:19:59.425][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-10-16 23:19:59.427][ef$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:19:59.430][ef$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:19:59.433][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-10-16 23:19:59.435][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-10-16 23:19:59.438][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:19:59.440][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:19:59.443][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-10-16 23:19:59.446][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-10-16 23:19:59.448][ef$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:19:59.450][ef$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:19:59.453][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-10-16 23:19:59.455][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-10-16 23:19:59.457][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:19:59.460][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:19:59.462][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-10-16 23:19:59.464][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-10-16 23:19:59.466][ef$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:19:59.468][ef$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:19:59.471][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-10-16 23:19:59.481][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-10-16 23:19:59.485][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:19:59.488][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:19:59.490][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-10-16 23:19:59.493][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-10-16 23:19:59.495][ef$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:19:59.497][ef$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:19:59.499][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-10-16 23:19:59.502][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-10-16 23:19:59.504][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:19:59.506][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:19:59.508][ef$get] Asked field names are: mass.
biodb.TRACE[2024-10-16 23:19:59.510][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-10-16 23:19:59.512][ef$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:19:59.514][ef$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:19:59.516][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2024-10-16 23:19:59.518][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-10-16 23:19:59.520][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:19:59.522][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:19:59.524][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-10-16 23:19:59.526][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-10-16 23:19:59.528][ef$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:19:59.530][ef$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:19:59.533][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-10-16 23:19:59.535][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-10-16 23:19:59.546][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:19:59.549][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:19:59.552][ef$get] Asked field names are: name.
biodb.TRACE[2024-10-16 23:19:59.554][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-10-16 23:19:59.556][ef$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:19:59.558][ef$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:19:59.561][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-10-16 23:19:59.564][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-10-16 23:19:59.565][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:19:59.567][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:19:59.570][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-10-16 23:19:59.572][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-10-16 23:19:59.574][ef$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:19:59.576][ef$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:19:59.578][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2024-10-16 23:19:59.580][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-10-16 23:19:59.582][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:19:59.584][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:19:59.586][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-10-16 23:19:59.588][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-10-16 23:19:59.590][ef$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:19:59.592][ef$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:19:59.595][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-10-16 23:19:59.597][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-10-16 23:19:59.599][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:19:59.601][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:19:59.603][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-10-16 23:19:59.605][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-10-16 23:19:59.607][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:19:59.609][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:19:59.611][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-10-16 23:19:59.613][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-10-16 23:19:59.615][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:19:59.617][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:19:59.619][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-10-16 23:19:59.621][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-10-16 23:19:59.623][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:19:59.625][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:19:59.627][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-10-16 23:19:59.629][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-10-16 23:19:59.631][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:19:59.633][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:19:59.635][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-10-16 23:19:59.637][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-10-16 23:19:59.639][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:19:59.640][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:19:59.642][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-10-16 23:19:59.644][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-10-16 23:19:59.646][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:19:59.648][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:19:59.650][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-10-16 23:19:59.652][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-10-16 23:19:59.654][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:19:59.656][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:19:59.658][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-10-16 23:19:59.661][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-10-16 23:19:59.663][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:19:59.665][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:19:59.667][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-10-16 23:19:59.669][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-10-16 23:19:59.671][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:19:59.673][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:19:59.675][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-10-16 23:19:59.677][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-10-16 23:19:59.679][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:19:59.680][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-10-16 23:19:59.682][self$createEntryFromContent] Accession numbers: 15441.
biodb.TRACE[2024-10-16 23:19:59.685][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-10-16 23:19:59.687][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-10-16 23:19:59.689][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:19:59.690][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:19:59.692][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-10-16 23:19:59.694][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-10-16 23:19:59.696][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:19:59.698][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:19:59.700][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-10-16 23:19:59.702][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-10-16 23:19:59.704][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:19:59.706][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-10-16 23:19:59.708][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-10-16 23:19:59.709][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-10-16 23:19:59.711][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-10-16 23:19:59.723][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-10-16 23:19:59.725][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-10-16 23:19:59.727][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-10-16 23:19:59.729][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-10-16 23:19:59.731][private$loadEntries] Creating entries from ids [1]: "15442".
biodb.DEBUG[2024-10-16 23:19:59.805][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2024-10-16 23:19:59.818][cch$loadFileContent] Trying to load 1 files from cache: [1]: "15442".
biodb.TRACE[2024-10-16 23:19:59.822][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-10-16 23:19:59.842][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/15442.xml".
biodb.DEBUG[2024-10-16 23:19:59.845][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2024-10-16 23:19:59.848][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2024-10-16 23:19:59.850][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2024-10-16 23:19:59.854][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-10-16 23:19:59.856][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-10-16 23:19:59.858][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-10-16 23:19:59.998][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-10-16 23:20:00.000][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-10-16 23:20:00.002][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-10-16 23:20:00.004][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-10-16 23:20:00.009][ef$get] Asked field names are: accession.
biodb.TRACE[2024-10-16 23:20:00.011][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-10-16 23:20:00.094][ef$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:20:00.097][ef$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:20:00.100][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-10-16 23:20:00.103][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-10-16 23:20:00.105][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:20:00.108][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:20:00.110][ef$get] Asked field names are: charge.
biodb.TRACE[2024-10-16 23:20:00.112][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-10-16 23:20:00.114][ef$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:20:00.116][ef$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:20:00.118][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-10-16 23:20:00.120][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-10-16 23:20:00.122][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:20:00.124][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:20:00.126][ef$get] Asked field names are: formula.
biodb.TRACE[2024-10-16 23:20:00.128][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-10-16 23:20:00.130][ef$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:20:00.132][ef$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:20:00.135][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-10-16 23:20:00.137][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-10-16 23:20:00.139][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:20:00.141][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:20:00.143][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-10-16 23:20:00.145][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-10-16 23:20:00.146][ef$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:20:00.148][ef$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:20:00.150][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-10-16 23:20:00.153][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-10-16 23:20:00.156][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:20:00.158][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:20:00.160][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-10-16 23:20:00.162][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-10-16 23:20:00.164][ef$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:20:00.166][ef$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:20:00.168][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-10-16 23:20:00.171][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-10-16 23:20:00.172][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:20:00.174][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:20:00.176][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-10-16 23:20:00.178][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-10-16 23:20:00.180][ef$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:20:00.181][ef$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:20:00.184][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-10-16 23:20:00.186][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-10-16 23:20:00.187][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:20:00.189][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:20:00.191][ef$get] Asked field names are: mass.
biodb.TRACE[2024-10-16 23:20:00.193][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-10-16 23:20:00.194][ef$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:20:00.196][ef$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:20:00.198][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2024-10-16 23:20:00.200][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-10-16 23:20:00.202][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:20:00.204][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:20:00.206][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-10-16 23:20:00.207][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-10-16 23:20:00.209][ef$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:20:00.211][ef$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:20:00.213][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-10-16 23:20:00.215][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-10-16 23:20:00.217][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:20:00.218][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:20:00.220][ef$get] Asked field names are: name.
biodb.TRACE[2024-10-16 23:20:00.222][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-10-16 23:20:00.224][ef$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:20:00.226][ef$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:20:00.228][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-10-16 23:20:00.230][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-10-16 23:20:00.232][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:20:00.234][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:20:00.246][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-10-16 23:20:00.249][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-10-16 23:20:00.251][ef$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:20:00.253][ef$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:20:00.255][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2024-10-16 23:20:00.257][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-10-16 23:20:00.259][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:20:00.261][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:20:00.263][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-10-16 23:20:00.265][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-10-16 23:20:00.267][ef$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:20:00.268][ef$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:20:00.271][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-10-16 23:20:00.273][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-10-16 23:20:00.275][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:20:00.277][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:20:00.279][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-10-16 23:20:00.282][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-10-16 23:20:00.284][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:20:00.285][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:20:00.287][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-10-16 23:20:00.289][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-10-16 23:20:00.291][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:20:00.293][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:20:00.295][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-10-16 23:20:00.297][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-10-16 23:20:00.299][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:20:00.302][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:20:00.304][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-10-16 23:20:00.306][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-10-16 23:20:00.308][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:20:00.313][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:20:00.315][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-10-16 23:20:00.317][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-10-16 23:20:00.319][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:20:00.321][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:20:00.324][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-10-16 23:20:00.326][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-10-16 23:20:00.328][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:20:00.330][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:20:00.332][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-10-16 23:20:00.334][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-10-16 23:20:00.336][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:20:00.337][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:20:00.340][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-10-16 23:20:00.342][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-10-16 23:20:00.344][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:20:00.345][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:20:00.347][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-10-16 23:20:00.349][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-10-16 23:20:00.351][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:20:00.353][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:20:00.354][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-10-16 23:20:00.356][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-10-16 23:20:00.358][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:20:00.359][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-10-16 23:20:00.361][self$createEntryFromContent] Accession numbers: 15442.
biodb.TRACE[2024-10-16 23:20:00.363][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-10-16 23:20:00.365][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-10-16 23:20:00.367][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:20:00.368][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:20:00.370][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-10-16 23:20:00.372][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-10-16 23:20:00.374][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:20:00.376][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:20:00.378][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-10-16 23:20:00.380][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-10-16 23:20:00.382][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:20:00.384][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-10-16 23:20:00.386][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-10-16 23:20:00.388][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-10-16 23:20:00.389][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-10-16 23:20:00.408][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-10-16 23:20:00.410][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-10-16 23:20:00.412][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-10-16 23:20:00.414][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-10-16 23:20:00.561][private$loadEntries] Creating entries from ids [1]: "57310".
biodb.DEBUG[2024-10-16 23:20:00.564][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2024-10-16 23:20:00.568][cch$loadFileContent] Trying to load 1 files from cache: [1]: "57310".
biodb.TRACE[2024-10-16 23:20:00.571][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-10-16 23:20:00.589][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/57310.xml".
biodb.DEBUG[2024-10-16 23:20:00.592][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2024-10-16 23:20:00.595][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2024-10-16 23:20:00.597][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2024-10-16 23:20:00.600][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-10-16 23:20:00.602][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-10-16 23:20:00.678][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-10-16 23:20:00.710][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-10-16 23:20:00.712][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-10-16 23:20:00.714][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-10-16 23:20:00.716][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-10-16 23:20:00.721][ef$get] Asked field names are: accession.
biodb.TRACE[2024-10-16 23:20:00.723][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-10-16 23:20:00.790][ef$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:20:00.793][ef$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:20:00.796][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-10-16 23:20:00.800][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-10-16 23:20:00.802][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:20:00.804][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:20:00.807][ef$get] Asked field names are: charge.
biodb.TRACE[2024-10-16 23:20:00.809][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-10-16 23:20:00.811][ef$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:20:00.813][ef$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:20:00.816][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-10-16 23:20:00.818][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-10-16 23:20:00.820][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:20:00.909][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:20:00.914][ef$get] Asked field names are: formula.
biodb.TRACE[2024-10-16 23:20:00.917][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-10-16 23:20:00.924][ef$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:20:00.953][ef$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:20:00.956][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-10-16 23:20:00.959][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-10-16 23:20:00.965][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:20:00.967][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:20:00.970][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-10-16 23:20:00.972][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-10-16 23:20:00.974][ef$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:20:00.976][ef$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:20:00.979][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-10-16 23:20:01.076][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-10-16 23:20:01.078][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:20:01.081][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:20:01.085][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-10-16 23:20:01.092][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-10-16 23:20:01.094][ef$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:20:01.097][ef$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:20:01.100][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-10-16 23:20:01.104][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-10-16 23:20:01.106][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:20:01.108][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:20:01.111][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-10-16 23:20:01.113][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-10-16 23:20:01.115][ef$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:20:01.232][ef$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:20:01.240][ef$get] Asked field names are: mass.
biodb.TRACE[2024-10-16 23:20:01.245][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-10-16 23:20:01.247][ef$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:20:01.249][ef$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:20:01.251][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2024-10-16 23:20:01.254][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-10-16 23:20:01.256][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:20:01.261][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:20:01.263][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-10-16 23:20:01.267][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-10-16 23:20:01.269][ef$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:20:01.271][ef$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:20:01.274][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-10-16 23:20:01.276][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-10-16 23:20:01.278][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:20:01.280][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:20:01.282][ef$get] Asked field names are: name.
biodb.TRACE[2024-10-16 23:20:01.284][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-10-16 23:20:01.286][ef$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:20:01.288][ef$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:20:01.291][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-10-16 23:20:01.293][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-10-16 23:20:01.295][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:20:01.296][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:20:01.299][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-10-16 23:20:01.301][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-10-16 23:20:01.303][ef$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:20:01.305][ef$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:20:01.307][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2024-10-16 23:20:01.309][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-10-16 23:20:01.312][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:20:01.314][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:20:01.316][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-10-16 23:20:01.318][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-10-16 23:20:01.320][ef$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:20:01.322][ef$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:20:01.324][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-10-16 23:20:01.326][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-10-16 23:20:01.337][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:20:01.340][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:20:01.343][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-10-16 23:20:01.346][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-10-16 23:20:01.348][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:20:01.351][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:20:01.353][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-10-16 23:20:01.356][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-10-16 23:20:01.358][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:20:01.361][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:20:01.363][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-10-16 23:20:01.365][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-10-16 23:20:01.368][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:20:01.371][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:20:01.373][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-10-16 23:20:01.375][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-10-16 23:20:01.377][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:20:01.379][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:20:01.382][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-10-16 23:20:01.385][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-10-16 23:20:01.387][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:20:01.389][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:20:01.392][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-10-16 23:20:01.394][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-10-16 23:20:01.396][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:20:01.399][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:20:01.401][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-10-16 23:20:01.404][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-10-16 23:20:01.406][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:20:01.408][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:20:01.413][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-10-16 23:20:01.417][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-10-16 23:20:01.419][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:20:01.421][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:20:01.424][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-10-16 23:20:01.426][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-10-16 23:20:01.428][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:20:01.430][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:20:01.434][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-10-16 23:20:01.436][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-10-16 23:20:01.438][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:20:01.441][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-10-16 23:20:01.443][self$createEntryFromContent] Accession numbers: 57310.
biodb.TRACE[2024-10-16 23:20:01.445][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-10-16 23:20:01.447][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-10-16 23:20:01.449][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:20:01.451][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:20:01.453][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-10-16 23:20:01.455][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-10-16 23:20:01.457][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:20:01.459][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:20:01.461][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-10-16 23:20:01.463][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-10-16 23:20:01.465][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:20:01.467][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-10-16 23:20:01.469][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-10-16 23:20:01.470][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-10-16 23:20:01.472][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-10-16 23:20:01.484][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-10-16 23:20:01.486][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-10-16 23:20:01.488][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-10-16 23:20:01.490][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-10-16 23:20:01.492][private$loadEntries] Creating entries from ids [1]: "66216".
biodb.DEBUG[2024-10-16 23:20:01.495][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2024-10-16 23:20:01.498][cch$loadFileContent] Trying to load 1 files from cache: [1]: "66216".
biodb.TRACE[2024-10-16 23:20:01.502][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-10-16 23:20:01.703][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/66216.xml".
biodb.DEBUG[2024-10-16 23:20:01.705][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2024-10-16 23:20:01.708][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2024-10-16 23:20:01.711][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2024-10-16 23:20:01.714][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-10-16 23:20:01.716][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-10-16 23:20:01.718][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-10-16 23:20:01.851][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-10-16 23:20:01.853][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-10-16 23:20:01.855][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-10-16 23:20:01.857][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-10-16 23:20:01.861][ef$get] Asked field names are: accession.
biodb.TRACE[2024-10-16 23:20:01.864][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-10-16 23:20:01.866][ef$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:20:01.868][ef$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:20:01.870][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-10-16 23:20:02.008][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-10-16 23:20:02.026][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:20:02.028][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:20:02.031][ef$get] Asked field names are: charge.
biodb.TRACE[2024-10-16 23:20:02.034][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-10-16 23:20:02.036][ef$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:20:02.038][ef$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:20:02.040][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-10-16 23:20:02.043][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-10-16 23:20:02.045][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:20:02.047][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:20:02.049][ef$get] Asked field names are: formula.
biodb.TRACE[2024-10-16 23:20:02.051][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-10-16 23:20:02.053][ef$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:20:02.057][ef$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:20:02.060][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-10-16 23:20:02.063][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-10-16 23:20:02.065][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:20:02.067][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:20:02.070][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-10-16 23:20:02.073][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-10-16 23:20:02.075][ef$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:20:02.076][ef$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:20:02.079][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-10-16 23:20:02.081][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-10-16 23:20:02.083][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:20:02.085][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:20:02.087][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-10-16 23:20:02.089][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-10-16 23:20:02.091][ef$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:20:02.093][ef$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:20:02.096][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-10-16 23:20:02.098][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-10-16 23:20:02.100][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:20:02.103][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:20:02.105][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-10-16 23:20:02.107][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-10-16 23:20:02.109][ef$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:20:02.112][ef$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:20:02.114][ef$get] Asked field names are: mass.
biodb.TRACE[2024-10-16 23:20:02.116][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-10-16 23:20:02.118][ef$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:20:02.120][ef$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:20:02.123][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2024-10-16 23:20:02.125][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-10-16 23:20:02.127][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:20:02.129][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:20:02.131][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-10-16 23:20:02.133][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-10-16 23:20:02.135][ef$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:20:02.136][ef$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:20:02.139][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-10-16 23:20:02.141][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-10-16 23:20:02.143][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:20:02.145][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:20:02.147][ef$get] Asked field names are: name.
biodb.TRACE[2024-10-16 23:20:02.150][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-10-16 23:20:02.152][ef$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:20:02.154][ef$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:20:02.157][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-10-16 23:20:02.161][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-10-16 23:20:02.163][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:20:02.165][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:20:02.167][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-10-16 23:20:02.169][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-10-16 23:20:02.171][ef$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:20:02.173][ef$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:20:02.176][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2024-10-16 23:20:02.178][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-10-16 23:20:02.180][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:20:02.182][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:20:02.184][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-10-16 23:20:02.186][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-10-16 23:20:02.188][ef$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:20:02.190][ef$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:20:02.193][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-10-16 23:20:02.195][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-10-16 23:20:02.197][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:20:02.199][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:20:02.201][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-10-16 23:20:02.204][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-10-16 23:20:02.207][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:20:02.210][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:20:02.214][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-10-16 23:20:02.217][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-10-16 23:20:02.219][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:20:02.221][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:20:02.223][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-10-16 23:20:02.226][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-10-16 23:20:02.228][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:20:02.231][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:20:02.245][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-10-16 23:20:02.248][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-10-16 23:20:02.250][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:20:02.252][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:20:02.255][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-10-16 23:20:02.258][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-10-16 23:20:02.260][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:20:02.266][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:20:02.268][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-10-16 23:20:02.270][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-10-16 23:20:02.272][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:20:02.274][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:20:02.276][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-10-16 23:20:02.279][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-10-16 23:20:02.280][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:20:02.282][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:20:02.285][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-10-16 23:20:02.287][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-10-16 23:20:02.289][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:20:02.291][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:20:02.293][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-10-16 23:20:02.297][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-10-16 23:20:02.299][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:20:02.301][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:20:02.303][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-10-16 23:20:02.306][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-10-16 23:20:02.308][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:20:02.310][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-10-16 23:20:02.312][self$createEntryFromContent] Accession numbers: 66216.
biodb.TRACE[2024-10-16 23:20:02.314][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-10-16 23:20:02.316][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-10-16 23:20:02.318][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:20:02.320][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:20:02.322][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-10-16 23:20:02.324][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-10-16 23:20:02.332][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:20:02.334][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:20:02.337][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-10-16 23:20:02.339][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-10-16 23:20:02.341][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:20:02.343][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-10-16 23:20:02.345][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-10-16 23:20:02.347][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-10-16 23:20:02.349][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-10-16 23:20:02.491][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-10-16 23:20:02.493][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-10-16 23:20:02.495][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-10-16 23:20:02.498][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-10-16 23:20:02.504][private$loadEntries] Creating entries from ids [1]: "70860".
biodb.DEBUG[2024-10-16 23:20:02.506][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2024-10-16 23:20:02.510][cch$loadFileContent] Trying to load 1 files from cache: [1]: "70860".
biodb.TRACE[2024-10-16 23:20:02.514][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-10-16 23:20:02.533][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/70860.xml".
biodb.DEBUG[2024-10-16 23:20:02.536][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2024-10-16 23:20:02.539][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2024-10-16 23:20:02.670][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2024-10-16 23:20:02.673][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-10-16 23:20:02.675][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-10-16 23:20:02.678][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-10-16 23:20:03.002][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-10-16 23:20:03.005][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-10-16 23:20:03.007][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-10-16 23:20:03.009][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-10-16 23:20:03.048][ef$get] Asked field names are: accession.
biodb.TRACE[2024-10-16 23:20:03.051][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-10-16 23:20:03.056][ef$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:20:03.063][ef$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:20:03.066][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-10-16 23:20:03.068][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-10-16 23:20:03.070][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:20:03.073][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:20:03.080][ef$get] Asked field names are: charge.
biodb.TRACE[2024-10-16 23:20:03.098][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-10-16 23:20:03.100][ef$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:20:03.103][ef$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:20:03.105][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-10-16 23:20:03.107][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-10-16 23:20:03.109][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:20:03.112][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:20:03.114][ef$get] Asked field names are: formula.
biodb.TRACE[2024-10-16 23:20:03.116][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-10-16 23:20:03.118][ef$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:20:03.130][ef$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:20:03.133][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-10-16 23:20:03.136][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-10-16 23:20:03.138][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:20:03.140][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:20:03.143][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-10-16 23:20:03.145][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-10-16 23:20:03.147][ef$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:20:03.149][ef$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:20:03.152][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-10-16 23:20:03.154][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-10-16 23:20:03.157][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:20:03.159][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:20:03.161][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-10-16 23:20:03.164][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-10-16 23:20:03.166][ef$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:20:03.168][ef$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:20:03.172][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-10-16 23:20:03.174][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-10-16 23:20:03.176][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:20:03.178][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:20:03.181][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-10-16 23:20:03.183][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-10-16 23:20:03.185][ef$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:20:03.187][ef$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:20:03.189][ef$get] Asked field names are: mass.
biodb.TRACE[2024-10-16 23:20:03.191][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-10-16 23:20:03.193][ef$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:20:03.195][ef$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:20:03.198][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2024-10-16 23:20:03.200][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-10-16 23:20:03.202][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:20:03.204][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:20:03.206][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-10-16 23:20:03.208][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-10-16 23:20:03.210][ef$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:20:03.212][ef$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:20:03.214][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-10-16 23:20:03.216][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-10-16 23:20:03.218][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:20:03.220][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:20:03.223][ef$get] Asked field names are: name.
biodb.TRACE[2024-10-16 23:20:03.225][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-10-16 23:20:03.227][ef$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:20:03.229][ef$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:20:03.239][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-10-16 23:20:03.242][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-10-16 23:20:03.244][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:20:03.246][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:20:03.248][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-10-16 23:20:03.251][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-10-16 23:20:03.253][ef$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:20:03.254][ef$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:20:03.257][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2024-10-16 23:20:03.259][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-10-16 23:20:03.261][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:20:03.263][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:20:03.265][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-10-16 23:20:03.267][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-10-16 23:20:03.269][ef$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:20:03.270][ef$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:20:03.273][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-10-16 23:20:03.275][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-10-16 23:20:03.277][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:20:03.279][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:20:03.281][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-10-16 23:20:03.283][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-10-16 23:20:03.285][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:20:03.287][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:20:03.289][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-10-16 23:20:03.291][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-10-16 23:20:03.293][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:20:03.295][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:20:03.307][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-10-16 23:20:03.309][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-10-16 23:20:03.312][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:20:03.314][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:20:03.316][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-10-16 23:20:03.318][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-10-16 23:20:03.320][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:20:03.323][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:20:03.325][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-10-16 23:20:03.327][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-10-16 23:20:03.330][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:20:03.332][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:20:03.334][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-10-16 23:20:03.336][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-10-16 23:20:03.341][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:20:03.343][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:20:03.345][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-10-16 23:20:03.357][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-10-16 23:20:03.359][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:20:03.361][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:20:03.364][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-10-16 23:20:03.366][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-10-16 23:20:03.368][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:20:03.370][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:20:03.372][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-10-16 23:20:03.375][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-10-16 23:20:03.377][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:20:03.378][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:20:03.381][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-10-16 23:20:03.383][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-10-16 23:20:03.385][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:20:03.387][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-10-16 23:20:03.389][self$createEntryFromContent] Accession numbers: 70860.
biodb.TRACE[2024-10-16 23:20:03.391][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-10-16 23:20:03.394][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-10-16 23:20:03.396][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:20:03.398][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:20:03.401][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-10-16 23:20:03.403][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-10-16 23:20:03.405][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:20:03.407][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:20:03.409][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-10-16 23:20:03.412][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-10-16 23:20:03.414][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:20:03.416][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-10-16 23:20:03.418][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-10-16 23:20:03.420][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-10-16 23:20:03.421][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-10-16 23:20:03.434][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-10-16 23:20:03.436][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-10-16 23:20:03.438][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-10-16 23:20:03.440][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-10-16 23:20:03.443][private$loadEntries] Creating entries from ids [1]: "70861".
biodb.DEBUG[2024-10-16 23:20:03.445][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2024-10-16 23:20:03.449][cch$loadFileContent] Trying to load 1 files from cache: [1]: "70861".
biodb.TRACE[2024-10-16 23:20:03.452][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-10-16 23:20:03.482][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/70861.xml".
biodb.DEBUG[2024-10-16 23:20:03.485][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2024-10-16 23:20:03.488][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2024-10-16 23:20:03.491][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2024-10-16 23:20:03.536][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-10-16 23:20:03.540][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-10-16 23:20:03.543][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-10-16 23:20:03.556][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-10-16 23:20:03.558][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-10-16 23:20:03.561][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-10-16 23:20:03.630][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-10-16 23:20:03.640][ef$get] Asked field names are: accession.
biodb.TRACE[2024-10-16 23:20:03.652][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-10-16 23:20:03.654][ef$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:20:03.657][ef$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:20:03.660][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-10-16 23:20:03.662][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-10-16 23:20:03.664][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:20:03.666][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:20:03.669][ef$get] Asked field names are: charge.
biodb.TRACE[2024-10-16 23:20:03.671][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-10-16 23:20:03.674][ef$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:20:03.676][ef$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:20:03.757][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-10-16 23:20:03.759][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-10-16 23:20:03.761][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:20:03.763][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:20:03.766][ef$get] Asked field names are: formula.
biodb.TRACE[2024-10-16 23:20:03.768][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-10-16 23:20:03.770][ef$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:20:03.772][ef$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:20:03.774][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-10-16 23:20:03.777][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-10-16 23:20:03.779][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:20:03.781][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:20:03.784][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-10-16 23:20:03.786][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-10-16 23:20:03.788][ef$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:20:03.789][ef$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:20:03.792][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-10-16 23:20:03.794][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-10-16 23:20:03.796][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:20:03.798][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:20:03.811][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-10-16 23:20:03.813][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-10-16 23:20:03.816][ef$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:20:03.818][ef$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:20:03.820][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-10-16 23:20:03.823][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-10-16 23:20:03.825][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:20:03.827][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:20:03.829][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-10-16 23:20:03.831][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-10-16 23:20:03.833][ef$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:20:03.835][ef$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:20:03.837][ef$get] Asked field names are: mass.
biodb.TRACE[2024-10-16 23:20:03.839][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-10-16 23:20:03.841][ef$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:20:03.843][ef$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:20:03.845][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2024-10-16 23:20:03.848][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-10-16 23:20:03.849][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:20:03.851][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:20:03.854][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-10-16 23:20:03.856][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-10-16 23:20:03.858][ef$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:20:03.860][ef$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:20:03.862][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-10-16 23:20:03.864][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-10-16 23:20:03.866][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:20:03.868][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:20:03.870][ef$get] Asked field names are: name.
biodb.TRACE[2024-10-16 23:20:03.872][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-10-16 23:20:03.874][ef$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:20:03.876][ef$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:20:03.878][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-10-16 23:20:03.880][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-10-16 23:20:03.882][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:20:03.884][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:20:03.886][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-10-16 23:20:03.889][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-10-16 23:20:03.890][ef$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:20:03.892][ef$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:20:03.894][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2024-10-16 23:20:03.897][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-10-16 23:20:03.898][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:20:03.900][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:20:03.902][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-10-16 23:20:03.904][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-10-16 23:20:03.906][ef$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:20:03.908][ef$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:20:03.911][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-10-16 23:20:03.913][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-10-16 23:20:03.914][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:20:03.916][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:20:03.919][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-10-16 23:20:03.921][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-10-16 23:20:03.923][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:20:03.925][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:20:03.927][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-10-16 23:20:03.929][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-10-16 23:20:03.931][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:20:03.933][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:20:03.935][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-10-16 23:20:03.937][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-10-16 23:20:03.939][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:20:03.940][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:20:03.942][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-10-16 23:20:03.945][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-10-16 23:20:03.946][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:20:03.948][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:20:03.950][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-10-16 23:20:03.952][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-10-16 23:20:03.954][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:20:03.956][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:20:03.958][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-10-16 23:20:03.960][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-10-16 23:20:03.962][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:20:03.964][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:20:03.966][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-10-16 23:20:03.968][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-10-16 23:20:03.969][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:20:03.971][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:20:03.973][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-10-16 23:20:03.975][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-10-16 23:20:03.977][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:20:03.979][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:20:03.981][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-10-16 23:20:03.983][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-10-16 23:20:03.985][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:20:03.987][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:20:03.989][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-10-16 23:20:04.000][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-10-16 23:20:04.002][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:20:04.005][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-10-16 23:20:04.007][self$createEntryFromContent] Accession numbers: 70861.
biodb.TRACE[2024-10-16 23:20:04.009][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-10-16 23:20:04.011][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-10-16 23:20:04.013][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:20:04.015][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:20:04.017][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-10-16 23:20:04.019][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-10-16 23:20:04.021][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:20:04.023][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:20:04.025][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-10-16 23:20:04.027][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-10-16 23:20:04.029][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:20:04.031][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-10-16 23:20:04.033][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-10-16 23:20:04.034][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-10-16 23:20:04.036][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-10-16 23:20:04.047][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-10-16 23:20:04.050][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-10-16 23:20:04.052][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-10-16 23:20:04.053][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-10-16 23:20:04.056][private$loadEntries] Creating entries from ids [1]: "78662".
biodb.DEBUG[2024-10-16 23:20:04.058][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2024-10-16 23:20:04.061][cch$loadFileContent] Trying to load 1 files from cache: [1]: "78662".
biodb.TRACE[2024-10-16 23:20:04.064][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-10-16 23:20:04.085][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/78662.xml".
biodb.DEBUG[2024-10-16 23:20:04.087][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2024-10-16 23:20:04.090][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2024-10-16 23:20:04.093][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2024-10-16 23:20:04.096][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-10-16 23:20:04.098][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-10-16 23:20:04.100][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-10-16 23:20:04.186][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-10-16 23:20:04.189][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-10-16 23:20:04.191][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-10-16 23:20:04.193][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-10-16 23:20:04.198][ef$get] Asked field names are: accession.
biodb.TRACE[2024-10-16 23:20:04.203][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-10-16 23:20:04.275][ef$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:20:04.285][ef$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:20:04.287][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-10-16 23:20:04.290][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-10-16 23:20:04.292][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:20:04.294][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:20:04.297][ef$get] Asked field names are: charge.
biodb.TRACE[2024-10-16 23:20:04.299][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-10-16 23:20:04.301][ef$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:20:04.303][ef$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:20:04.306][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-10-16 23:20:04.308][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-10-16 23:20:04.310][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:20:04.312][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:20:04.438][ef$get] Asked field names are: formula.
biodb.TRACE[2024-10-16 23:20:04.441][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-10-16 23:20:04.444][ef$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:20:04.446][ef$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:20:04.448][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-10-16 23:20:04.469][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-10-16 23:20:04.473][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:20:04.475][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:20:04.480][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-10-16 23:20:04.482][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-10-16 23:20:04.484][ef$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:20:04.486][ef$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:20:04.489][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-10-16 23:20:04.491][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-10-16 23:20:04.602][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:20:04.604][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:20:04.606][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-10-16 23:20:04.609][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-10-16 23:20:04.611][ef$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:20:04.613][ef$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:20:04.615][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-10-16 23:20:04.617][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-10-16 23:20:04.619][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:20:04.621][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:20:04.624][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-10-16 23:20:04.626][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-10-16 23:20:04.628][ef$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:20:04.630][ef$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:20:04.704][ef$get] Asked field names are: mass.
biodb.TRACE[2024-10-16 23:20:04.706][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-10-16 23:20:04.709][ef$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:20:04.711][ef$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:20:04.714][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2024-10-16 23:20:04.716][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-10-16 23:20:04.718][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:20:04.720][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:20:04.722][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-10-16 23:20:04.724][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-10-16 23:20:04.726][ef$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:20:04.728][ef$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:20:04.731][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-10-16 23:20:04.733][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-10-16 23:20:04.831][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:20:04.833][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:20:04.836][ef$get] Asked field names are: name.
biodb.TRACE[2024-10-16 23:20:04.838][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-10-16 23:20:04.840][ef$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:20:04.844][ef$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:20:04.848][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-10-16 23:20:04.850][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-10-16 23:20:04.852][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:20:04.854][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:20:04.857][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-10-16 23:20:04.859][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-10-16 23:20:04.861][ef$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:20:04.863][ef$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:20:04.866][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2024-10-16 23:20:04.868][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-10-16 23:20:04.870][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:20:04.872][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:20:04.874][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-10-16 23:20:04.876][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-10-16 23:20:04.880][ef$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:20:04.883][ef$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:20:04.885][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-10-16 23:20:04.888][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-10-16 23:20:04.890][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:20:04.891][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:20:04.894][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-10-16 23:20:04.896][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-10-16 23:20:04.898][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:20:04.900][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:20:04.902][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-10-16 23:20:04.904][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-10-16 23:20:04.906][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:20:04.908][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:20:04.910][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-10-16 23:20:04.912][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-10-16 23:20:04.914][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:20:04.916][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:20:04.918][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-10-16 23:20:04.920][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-10-16 23:20:04.922][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:20:04.924][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:20:04.926][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-10-16 23:20:04.929][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-10-16 23:20:04.930][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:20:04.932][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:20:04.934][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-10-16 23:20:04.936][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-10-16 23:20:04.938][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:20:04.940][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:20:04.942][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-10-16 23:20:04.944][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-10-16 23:20:04.946][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:20:04.948][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:20:04.951][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-10-16 23:20:04.953][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-10-16 23:20:04.955][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:20:04.957][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:20:04.959][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-10-16 23:20:04.961][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-10-16 23:20:04.963][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:20:04.964][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:20:04.966][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-10-16 23:20:04.968][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-10-16 23:20:04.970][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:20:04.972][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-10-16 23:20:04.974][self$createEntryFromContent] Accession numbers: 78662.
biodb.TRACE[2024-10-16 23:20:04.976][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-10-16 23:20:04.979][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-10-16 23:20:04.981][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:20:04.984][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:20:04.986][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-10-16 23:20:04.988][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-10-16 23:20:04.990][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:20:04.991][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:20:05.003][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-10-16 23:20:05.006][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-10-16 23:20:05.008][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:20:05.011][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-10-16 23:20:05.014][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-10-16 23:20:05.016][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-10-16 23:20:05.018][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-10-16 23:20:05.067][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-10-16 23:20:05.070][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-10-16 23:20:05.072][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-10-16 23:20:05.074][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-10-16 23:20:05.076][private$loadEntries] Creating entries from ids [1]: "85084".
biodb.DEBUG[2024-10-16 23:20:05.079][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2024-10-16 23:20:05.082][cch$loadFileContent] Trying to load 1 files from cache: [1]: "85084".
biodb.TRACE[2024-10-16 23:20:05.086][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-10-16 23:20:05.664][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/85084.xml".
biodb.DEBUG[2024-10-16 23:20:05.667][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2024-10-16 23:20:05.670][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2024-10-16 23:20:05.672][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2024-10-16 23:20:05.676][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-10-16 23:20:05.678][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-10-16 23:20:05.687][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-10-16 23:20:05.938][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-10-16 23:20:05.941][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-10-16 23:20:05.943][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-10-16 23:20:05.945][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-10-16 23:20:05.949][ef$get] Asked field names are: accession.
biodb.TRACE[2024-10-16 23:20:05.951][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-10-16 23:20:05.953][ef$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:20:05.955][ef$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:20:05.958][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-10-16 23:20:05.960][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-10-16 23:20:06.019][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:20:06.024][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:20:06.027][ef$get] Asked field names are: charge.
biodb.TRACE[2024-10-16 23:20:06.029][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-10-16 23:20:06.034][ef$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:20:06.036][ef$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:20:06.038][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-10-16 23:20:06.040][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-10-16 23:20:06.043][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:20:06.044][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:20:06.047][ef$get] Asked field names are: formula.
biodb.TRACE[2024-10-16 23:20:06.049][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-10-16 23:20:06.051][ef$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:20:06.053][ef$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:20:06.107][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-10-16 23:20:06.110][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-10-16 23:20:06.114][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:20:06.117][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:20:06.119][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-10-16 23:20:06.122][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-10-16 23:20:06.124][ef$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:20:06.126][ef$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:20:06.128][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-10-16 23:20:06.130][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-10-16 23:20:06.132][ef$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:20:06.134][ef$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:20:06.137][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-10-16 23:20:06.207][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-10-16 23:20:06.212][ef$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:20:06.214][ef$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:20:06.217][ef$get] Asked field names are: mass.
biodb.TRACE[2024-10-16 23:20:06.219][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-10-16 23:20:06.226][ef$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:20:06.231][ef$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:20:06.234][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2024-10-16 23:20:06.237][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-10-16 23:20:06.239][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:20:06.241][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:20:06.243][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-10-16 23:20:06.245][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-10-16 23:20:06.247][ef$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:20:06.272][ef$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:20:06.275][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-10-16 23:20:06.278][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-10-16 23:20:06.280][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:20:06.282][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:20:06.284][ef$get] Asked field names are: name.
biodb.TRACE[2024-10-16 23:20:06.287][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-10-16 23:20:06.289][ef$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:20:06.301][ef$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:20:06.304][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-10-16 23:20:06.307][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-10-16 23:20:06.309][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:20:06.312][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:20:06.314][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-10-16 23:20:06.357][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-10-16 23:20:06.360][ef$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:20:06.362][ef$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:20:06.364][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2024-10-16 23:20:06.367][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-10-16 23:20:06.369][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:20:06.371][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:20:06.373][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-10-16 23:20:06.375][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-10-16 23:20:06.377][ef$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:20:06.379][ef$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:20:06.381][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-10-16 23:20:06.384][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-10-16 23:20:06.386][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:20:06.387][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:20:06.390][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-10-16 23:20:06.392][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-10-16 23:20:06.394][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:20:06.395][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:20:06.398][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-10-16 23:20:06.400][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-10-16 23:20:06.401][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:20:06.403][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:20:06.405][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-10-16 23:20:06.408][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-10-16 23:20:06.409][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:20:06.411][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:20:06.413][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-10-16 23:20:06.416][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-10-16 23:20:06.417][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:20:06.419][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:20:06.421][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-10-16 23:20:06.423][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-10-16 23:20:06.425][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:20:06.427][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:20:06.429][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-10-16 23:20:06.431][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-10-16 23:20:06.433][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:20:06.435][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:20:06.437][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-10-16 23:20:06.439][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-10-16 23:20:06.441][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:20:06.443][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:20:06.445][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-10-16 23:20:06.447][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-10-16 23:20:06.449][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:20:06.451][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:20:06.453][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-10-16 23:20:06.455][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-10-16 23:20:06.457][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:20:06.459][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-10-16 23:20:06.461][self$createEntryFromContent] Accession numbers: 85084.
biodb.TRACE[2024-10-16 23:20:06.463][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-10-16 23:20:06.465][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-10-16 23:20:06.467][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:20:06.469][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:20:06.471][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-10-16 23:20:06.473][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-10-16 23:20:06.475][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:20:06.477][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:20:06.479][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-10-16 23:20:06.481][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-10-16 23:20:06.482][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:20:06.484][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-10-16 23:20:06.486][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-10-16 23:20:06.488][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-10-16 23:20:06.490][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-10-16 23:20:07.678][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-10-16 23:20:07.680][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-10-16 23:20:07.682][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-10-16 23:20:07.684][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-10-16 23:20:07.687][private$loadEntries] Creating entries from ids [1]: "85086".
biodb.DEBUG[2024-10-16 23:20:07.689][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2024-10-16 23:20:07.692][cch$loadFileContent] Trying to load 1 files from cache: [1]: "85086".
biodb.TRACE[2024-10-16 23:20:07.695][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-10-16 23:20:07.717][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/85086.xml".
biodb.DEBUG[2024-10-16 23:20:07.719][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2024-10-16 23:20:07.881][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2024-10-16 23:20:07.884][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2024-10-16 23:20:07.896][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-10-16 23:20:07.899][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-10-16 23:20:07.901][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-10-16 23:20:08.003][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-10-16 23:20:08.005][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-10-16 23:20:08.008][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-10-16 23:20:08.010][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-10-16 23:20:08.018][ef$get] Asked field names are: accession.
biodb.TRACE[2024-10-16 23:20:08.020][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-10-16 23:20:08.023][ef$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:20:08.025][ef$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:20:08.028][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-10-16 23:20:08.030][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-10-16 23:20:08.032][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:20:08.112][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:20:08.114][ef$get] Asked field names are: charge.
biodb.TRACE[2024-10-16 23:20:08.117][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-10-16 23:20:08.119][ef$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:20:08.121][ef$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:20:08.124][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-10-16 23:20:08.126][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-10-16 23:20:08.128][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:20:08.130][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:20:08.132][ef$get] Asked field names are: formula.
biodb.TRACE[2024-10-16 23:20:08.135][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-10-16 23:20:08.137][ef$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:20:08.139][ef$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:20:08.142][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-10-16 23:20:08.144][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-10-16 23:20:08.146][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:20:08.148][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:20:08.150][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-10-16 23:20:08.152][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-10-16 23:20:08.155][ef$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:20:08.157][ef$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:20:08.159][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-10-16 23:20:08.161][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-10-16 23:20:08.163][ef$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:20:08.164][ef$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:20:08.167][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-10-16 23:20:08.169][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-10-16 23:20:08.170][ef$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:20:08.172][ef$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:20:08.175][ef$get] Asked field names are: mass.
biodb.TRACE[2024-10-16 23:20:08.176][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-10-16 23:20:08.178][ef$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:20:08.180][ef$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:20:08.182][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2024-10-16 23:20:08.184][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-10-16 23:20:08.186][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:20:08.188][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:20:08.190][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-10-16 23:20:08.192][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-10-16 23:20:08.194][ef$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:20:08.195][ef$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:20:08.198][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-10-16 23:20:08.200][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-10-16 23:20:08.202][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:20:08.203][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:20:08.205][ef$get] Asked field names are: name.
biodb.TRACE[2024-10-16 23:20:08.207][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-10-16 23:20:08.209][ef$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:20:08.211][ef$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:20:08.214][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-10-16 23:20:08.216][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-10-16 23:20:08.218][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:20:08.219][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:20:08.222][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-10-16 23:20:08.224][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-10-16 23:20:08.226][ef$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:20:08.227][ef$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:20:08.230][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2024-10-16 23:20:08.232][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-10-16 23:20:08.235][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:20:08.237][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:20:08.239][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-10-16 23:20:08.242][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-10-16 23:20:08.244][ef$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:20:08.246][ef$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:20:08.249][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-10-16 23:20:08.251][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-10-16 23:20:08.254][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:20:08.256][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:20:08.258][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-10-16 23:20:08.269][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-10-16 23:20:08.271][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:20:08.274][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:20:08.276][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-10-16 23:20:08.279][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-10-16 23:20:08.280][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:20:08.282][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:20:08.284][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-10-16 23:20:08.286][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-10-16 23:20:08.288][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:20:08.290][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:20:08.292][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-10-16 23:20:08.294][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-10-16 23:20:08.296][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:20:08.298][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:20:08.300][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-10-16 23:20:08.302][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-10-16 23:20:08.304][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:20:08.305][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:20:08.308][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-10-16 23:20:08.310][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-10-16 23:20:08.311][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:20:08.313][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:20:08.316][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-10-16 23:20:08.318][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-10-16 23:20:08.320][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:20:08.321][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:20:08.323][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-10-16 23:20:08.328][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-10-16 23:20:08.331][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:20:08.333][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:20:08.335][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-10-16 23:20:08.337][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-10-16 23:20:08.339][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:20:08.341][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-10-16 23:20:08.344][self$createEntryFromContent] Accession numbers: 85086.
biodb.TRACE[2024-10-16 23:20:08.346][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-10-16 23:20:08.348][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-10-16 23:20:08.350][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:20:08.352][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:20:08.354][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-10-16 23:20:08.356][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-10-16 23:20:08.364][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:20:08.366][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:20:08.368][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-10-16 23:20:08.371][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-10-16 23:20:08.373][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:20:08.375][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-10-16 23:20:08.377][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-10-16 23:20:08.379][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-10-16 23:20:08.381][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-10-16 23:20:08.491][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-10-16 23:20:08.493][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-10-16 23:20:08.495][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-10-16 23:20:08.497][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-10-16 23:20:08.510][private$loadEntries] Creating entries from ids [1]: "88123".
biodb.DEBUG[2024-10-16 23:20:08.512][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2024-10-16 23:20:08.516][cch$loadFileContent] Trying to load 1 files from cache: [1]: "88123".
biodb.TRACE[2024-10-16 23:20:08.519][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-10-16 23:20:08.815][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/88123.xml".
biodb.DEBUG[2024-10-16 23:20:08.818][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2024-10-16 23:20:08.821][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2024-10-16 23:20:08.969][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2024-10-16 23:20:08.973][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-10-16 23:20:08.975][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-10-16 23:20:08.977][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-10-16 23:20:09.064][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-10-16 23:20:09.066][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-10-16 23:20:09.068][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-10-16 23:20:09.070][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-10-16 23:20:09.075][ef$get] Asked field names are: accession.
biodb.TRACE[2024-10-16 23:20:09.077][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-10-16 23:20:09.079][ef$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:20:09.081][ef$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:20:09.083][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-10-16 23:20:09.085][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-10-16 23:20:09.087][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:20:09.094][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:20:09.097][ef$get] Asked field names are: charge.
biodb.TRACE[2024-10-16 23:20:09.134][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-10-16 23:20:09.136][ef$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:20:09.139][ef$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:20:09.155][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-10-16 23:20:09.158][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-10-16 23:20:09.161][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:20:09.163][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:20:09.166][ef$get] Asked field names are: formula.
biodb.TRACE[2024-10-16 23:20:09.169][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-10-16 23:20:09.171][ef$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:20:09.174][ef$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:20:09.177][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-10-16 23:20:09.179][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-10-16 23:20:09.181][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:20:09.183][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:20:09.185][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-10-16 23:20:09.188][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-10-16 23:20:09.189][ef$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:20:09.191][ef$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:20:09.194][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-10-16 23:20:09.196][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-10-16 23:20:09.198][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:20:09.200][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:20:09.202][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-10-16 23:20:09.204][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-10-16 23:20:09.205][ef$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:20:09.207][ef$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:20:09.210][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-10-16 23:20:09.212][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-10-16 23:20:09.214][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:20:09.216][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:20:09.218][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-10-16 23:20:09.220][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-10-16 23:20:09.222][ef$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:20:09.225][ef$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:20:09.228][ef$get] Asked field names are: mass.
biodb.TRACE[2024-10-16 23:20:09.230][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-10-16 23:20:09.232][ef$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:20:09.234][ef$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:20:09.237][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2024-10-16 23:20:09.239][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-10-16 23:20:09.243][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:20:09.244][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:20:09.247][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-10-16 23:20:09.249][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-10-16 23:20:09.251][ef$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:20:09.253][ef$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:20:09.255][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-10-16 23:20:09.258][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-10-16 23:20:09.260][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:20:09.261][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:20:09.264][ef$get] Asked field names are: name.
biodb.TRACE[2024-10-16 23:20:09.266][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-10-16 23:20:09.268][ef$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:20:09.269][ef$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:20:09.272][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-10-16 23:20:09.274][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-10-16 23:20:09.276][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:20:09.278][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:20:09.280][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-10-16 23:20:09.282][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-10-16 23:20:09.284][ef$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:20:09.286][ef$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:20:09.288][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2024-10-16 23:20:09.290][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-10-16 23:20:09.292][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:20:09.294][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:20:09.296][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-10-16 23:20:09.298][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-10-16 23:20:09.301][ef$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:20:09.303][ef$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:20:09.305][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-10-16 23:20:09.307][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-10-16 23:20:09.309][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:20:09.311][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:20:09.313][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-10-16 23:20:09.316][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-10-16 23:20:09.318][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:20:09.319][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:20:09.322][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-10-16 23:20:09.324][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-10-16 23:20:09.326][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:20:09.328][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:20:09.330][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-10-16 23:20:09.332][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-10-16 23:20:09.334][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:20:09.336][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:20:09.338][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-10-16 23:20:09.340][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-10-16 23:20:09.342][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:20:09.344][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:20:09.358][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-10-16 23:20:09.361][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-10-16 23:20:09.364][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:20:09.366][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:20:09.369][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-10-16 23:20:09.371][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-10-16 23:20:09.373][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:20:09.375][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:20:09.377][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-10-16 23:20:09.379][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-10-16 23:20:09.381][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:20:09.383][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:20:09.386][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-10-16 23:20:09.388][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-10-16 23:20:09.390][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:20:09.392][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:20:09.394][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-10-16 23:20:09.396][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-10-16 23:20:09.398][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:20:09.399][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:20:09.402][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-10-16 23:20:09.404][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-10-16 23:20:09.406][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:20:09.407][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-10-16 23:20:09.409][self$createEntryFromContent] Accession numbers: 88123.
biodb.TRACE[2024-10-16 23:20:09.411][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-10-16 23:20:09.413][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-10-16 23:20:09.415][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:20:09.417][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:20:09.419][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-10-16 23:20:09.421][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-10-16 23:20:09.423][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:20:09.425][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:20:09.427][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-10-16 23:20:09.429][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-10-16 23:20:09.431][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:20:09.433][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-10-16 23:20:09.435][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-10-16 23:20:09.439][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-10-16 23:20:09.441][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-10-16 23:20:09.453][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-10-16 23:20:09.536][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-10-16 23:20:09.548][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-10-16 23:20:09.551][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-10-16 23:20:09.554][private$loadEntries] Creating entries from ids [1]: "134117".
biodb.DEBUG[2024-10-16 23:20:09.564][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2024-10-16 23:20:09.568][cch$loadFileContent] Trying to load 1 files from cache: [1]: "134117".
biodb.TRACE[2024-10-16 23:20:09.572][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-10-16 23:20:09.591][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/134117.xml".
biodb.DEBUG[2024-10-16 23:20:09.593][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2024-10-16 23:20:09.596][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2024-10-16 23:20:09.598][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2024-10-16 23:20:09.684][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-10-16 23:20:09.686][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-10-16 23:20:09.688][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-10-16 23:20:09.699][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-10-16 23:20:09.701][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-10-16 23:20:09.703][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-10-16 23:20:09.705][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-10-16 23:20:09.710][ef$get] Asked field names are: accession.
biodb.TRACE[2024-10-16 23:20:09.712][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-10-16 23:20:09.714][ef$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:20:09.716][ef$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:20:09.718][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-10-16 23:20:09.720][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-10-16 23:20:09.722][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:20:09.724][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:20:09.726][ef$get] Asked field names are: charge.
biodb.TRACE[2024-10-16 23:20:09.728][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-10-16 23:20:09.730][ef$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:20:09.732][ef$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:20:09.735][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-10-16 23:20:09.737][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-10-16 23:20:09.739][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:20:09.741][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:20:09.743][ef$get] Asked field names are: formula.
biodb.TRACE[2024-10-16 23:20:09.745][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-10-16 23:20:09.747][ef$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:20:09.749][ef$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:20:09.752][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-10-16 23:20:09.754][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-10-16 23:20:09.756][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:20:09.767][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:20:09.770][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-10-16 23:20:09.773][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-10-16 23:20:09.775][ef$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:20:09.778][ef$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:20:09.781][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-10-16 23:20:09.784][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-10-16 23:20:09.786][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:20:09.788][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:20:09.790][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-10-16 23:20:09.792][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-10-16 23:20:09.794][ef$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:20:09.796][ef$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:20:09.798][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-10-16 23:20:09.800][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-10-16 23:20:09.802][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:20:09.804][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:20:09.806][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-10-16 23:20:09.808][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-10-16 23:20:09.810][ef$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:20:09.812][ef$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:20:09.815][ef$get] Asked field names are: mass.
biodb.TRACE[2024-10-16 23:20:09.817][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-10-16 23:20:09.819][ef$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:20:09.821][ef$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:20:09.825][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2024-10-16 23:20:09.832][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-10-16 23:20:09.835][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:20:09.838][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:20:09.840][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-10-16 23:20:09.842][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-10-16 23:20:09.844][ef$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:20:09.846][ef$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:20:09.849][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-10-16 23:20:09.851][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-10-16 23:20:09.853][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:20:09.855][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:20:09.858][ef$get] Asked field names are: name.
biodb.TRACE[2024-10-16 23:20:09.860][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-10-16 23:20:09.863][ef$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:20:09.864][ef$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:20:09.867][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-10-16 23:20:09.869][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-10-16 23:20:09.871][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:20:09.873][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:20:09.875][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-10-16 23:20:09.877][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-10-16 23:20:09.879][ef$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:20:09.881][ef$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:20:09.884][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2024-10-16 23:20:09.886][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-10-16 23:20:09.888][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:20:09.890][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:20:09.892][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-10-16 23:20:09.894][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-10-16 23:20:09.896][ef$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:20:09.898][ef$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:20:09.900][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-10-16 23:20:09.903][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-10-16 23:20:09.905][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:20:09.906][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:20:09.909][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-10-16 23:20:09.911][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-10-16 23:20:09.913][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:20:09.915][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:20:09.917][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-10-16 23:20:09.919][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-10-16 23:20:09.921][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:20:09.923][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:20:09.925][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-10-16 23:20:09.927][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-10-16 23:20:09.929][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:20:09.931][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:20:09.933][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-10-16 23:20:09.935][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-10-16 23:20:09.937][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:20:09.939][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:20:09.941][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-10-16 23:20:09.943][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-10-16 23:20:09.945][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:20:09.947][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:20:09.949][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-10-16 23:20:09.951][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-10-16 23:20:09.953][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:20:09.955][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:20:09.957][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-10-16 23:20:09.959][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-10-16 23:20:09.961][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:20:09.963][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:20:09.965][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-10-16 23:20:09.977][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-10-16 23:20:09.979][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:20:09.982][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:20:09.984][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-10-16 23:20:09.987][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-10-16 23:20:09.989][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:20:09.991][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:20:09.993][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-10-16 23:20:09.995][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-10-16 23:20:09.998][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:20:10.000][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-10-16 23:20:10.002][self$createEntryFromContent] Accession numbers: 134117.
biodb.TRACE[2024-10-16 23:20:10.004][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-10-16 23:20:10.006][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-10-16 23:20:10.008][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:20:10.010][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:20:10.012][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-10-16 23:20:10.014][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-10-16 23:20:10.015][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:20:10.017][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:20:10.019][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-10-16 23:20:10.021][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-10-16 23:20:10.023][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:20:10.025][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-10-16 23:20:10.027][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-10-16 23:20:10.029][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-10-16 23:20:10.030][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-10-16 23:20:10.042][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-10-16 23:20:10.045][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-10-16 23:20:10.047][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-10-16 23:20:10.049][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-10-16 23:20:10.051][private$loadEntries] Creating entries from ids [1]: "138307".
biodb.DEBUG[2024-10-16 23:20:10.138][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2024-10-16 23:20:10.142][cch$loadFileContent] Trying to load 1 files from cache: [1]: "138307".
biodb.TRACE[2024-10-16 23:20:10.146][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-10-16 23:20:10.165][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/138307.xml".
biodb.DEBUG[2024-10-16 23:20:10.168][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2024-10-16 23:20:10.171][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2024-10-16 23:20:10.174][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2024-10-16 23:20:10.178][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-10-16 23:20:10.180][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-10-16 23:20:10.181][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-10-16 23:20:10.288][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-10-16 23:20:10.291][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-10-16 23:20:10.293][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-10-16 23:20:10.295][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-10-16 23:20:10.299][ef$get] Asked field names are: accession.
biodb.TRACE[2024-10-16 23:20:10.302][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-10-16 23:20:10.304][ef$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:20:10.306][ef$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:20:10.308][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-10-16 23:20:10.311][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-10-16 23:20:10.313][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:20:10.315][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:20:10.317][ef$get] Asked field names are: charge.
biodb.TRACE[2024-10-16 23:20:10.319][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-10-16 23:20:10.321][ef$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:20:10.323][ef$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:20:10.326][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-10-16 23:20:10.328][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-10-16 23:20:10.330][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:20:10.332][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:20:10.334][ef$get] Asked field names are: formula.
biodb.TRACE[2024-10-16 23:20:10.336][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-10-16 23:20:10.338][ef$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:20:10.340][ef$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:20:10.342][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-10-16 23:20:10.344][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-10-16 23:20:10.346][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:20:10.348][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:20:10.351][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-10-16 23:20:10.353][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-10-16 23:20:10.355][ef$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:20:10.356][ef$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:20:10.359][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-10-16 23:20:10.361][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-10-16 23:20:10.363][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:20:10.365][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:20:10.367][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-10-16 23:20:10.369][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-10-16 23:20:10.371][ef$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:20:10.373][ef$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:20:10.385][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-10-16 23:20:10.388][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-10-16 23:20:10.390][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:20:10.393][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:20:10.395][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-10-16 23:20:10.397][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-10-16 23:20:10.399][ef$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:20:10.401][ef$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:20:10.404][ef$get] Asked field names are: mass.
biodb.TRACE[2024-10-16 23:20:10.406][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-10-16 23:20:10.408][ef$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:20:10.410][ef$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:20:10.412][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2024-10-16 23:20:10.415][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-10-16 23:20:10.417][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:20:10.419][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:20:10.422][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-10-16 23:20:10.424][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-10-16 23:20:10.426][ef$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:20:10.428][ef$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:20:10.431][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-10-16 23:20:10.433][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-10-16 23:20:10.435][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:20:10.437][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:20:10.439][ef$get] Asked field names are: name.
biodb.TRACE[2024-10-16 23:20:10.441][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-10-16 23:20:10.443][ef$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:20:10.445][ef$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:20:10.448][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-10-16 23:20:10.451][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-10-16 23:20:10.453][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:20:10.455][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:20:10.457][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-10-16 23:20:10.459][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-10-16 23:20:10.461][ef$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:20:10.463][ef$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:20:10.466][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2024-10-16 23:20:10.468][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-10-16 23:20:10.470][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:20:10.472][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:20:10.474][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-10-16 23:20:10.476][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-10-16 23:20:10.478][ef$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:20:10.479][ef$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:20:10.484][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-10-16 23:20:10.486][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-10-16 23:20:10.488][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:20:10.490][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:20:10.493][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-10-16 23:20:10.495][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-10-16 23:20:10.497][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:20:10.499][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:20:10.501][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-10-16 23:20:10.503][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-10-16 23:20:10.505][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:20:10.507][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:20:10.509][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-10-16 23:20:10.511][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-10-16 23:20:10.513][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:20:10.515][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:20:10.517][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-10-16 23:20:10.520][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-10-16 23:20:10.522][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:20:10.524][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:20:10.526][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-10-16 23:20:10.528][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-10-16 23:20:10.530][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:20:10.532][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:20:10.534][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-10-16 23:20:10.537][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-10-16 23:20:10.547][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:20:10.549][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:20:10.552][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-10-16 23:20:10.554][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-10-16 23:20:10.557][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:20:10.559][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:20:10.562][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-10-16 23:20:10.565][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-10-16 23:20:10.568][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:20:10.570][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:20:10.572][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-10-16 23:20:10.575][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-10-16 23:20:10.577][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:20:10.579][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:20:10.581][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-10-16 23:20:10.583][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-10-16 23:20:10.585][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:20:10.587][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-10-16 23:20:10.589][self$createEntryFromContent] Accession numbers: 138307.
biodb.TRACE[2024-10-16 23:20:10.591][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-10-16 23:20:10.603][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-10-16 23:20:10.606][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:20:10.608][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:20:10.610][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-10-16 23:20:10.613][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-10-16 23:20:10.615][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:20:10.617][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:20:10.619][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-10-16 23:20:10.621][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-10-16 23:20:10.623][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:20:10.625][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-10-16 23:20:10.627][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-10-16 23:20:10.629][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-10-16 23:20:10.631][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-10-16 23:20:10.643][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-10-16 23:20:10.645][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-10-16 23:20:10.647][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-10-16 23:20:10.649][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-10-16 23:20:10.652][private$loadEntries] Creating entries from ids [1]: "176803".
biodb.DEBUG[2024-10-16 23:20:10.654][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2024-10-16 23:20:10.657][cch$loadFileContent] Trying to load 1 files from cache: [1]: "176803".
biodb.TRACE[2024-10-16 23:20:10.662][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-10-16 23:20:10.874][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/176803.xml".
biodb.DEBUG[2024-10-16 23:20:10.877][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2024-10-16 23:20:10.879][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2024-10-16 23:20:10.882][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2024-10-16 23:20:10.885][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-10-16 23:20:10.887][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-10-16 23:20:10.888][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-10-16 23:20:10.949][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-10-16 23:20:10.952][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-10-16 23:20:10.954][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-10-16 23:20:10.956][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-10-16 23:20:10.960][ef$get] Asked field names are: accession.
biodb.TRACE[2024-10-16 23:20:10.963][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-10-16 23:20:10.965][ef$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:20:10.966][ef$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:20:10.969][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-10-16 23:20:10.971][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-10-16 23:20:11.032][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:20:11.034][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:20:11.037][ef$get] Asked field names are: charge.
biodb.TRACE[2024-10-16 23:20:11.040][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-10-16 23:20:11.042][ef$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:20:11.044][ef$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:20:11.046][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-10-16 23:20:11.049][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-10-16 23:20:11.051][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:20:11.053][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:20:11.055][ef$get] Asked field names are: formula.
biodb.TRACE[2024-10-16 23:20:11.057][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-10-16 23:20:11.059][ef$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:20:11.061][ef$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:20:11.064][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-10-16 23:20:11.066][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-10-16 23:20:11.068][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:20:11.070][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:20:11.072][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-10-16 23:20:11.075][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-10-16 23:20:11.077][ef$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:20:11.079][ef$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:20:11.081][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-10-16 23:20:11.083][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-10-16 23:20:11.085][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:20:11.087][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:20:11.089][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-10-16 23:20:11.092][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-10-16 23:20:11.093][ef$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:20:11.095][ef$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:20:11.098][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-10-16 23:20:11.100][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-10-16 23:20:11.102][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:20:11.104][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:20:11.106][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-10-16 23:20:11.108][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-10-16 23:20:11.110][ef$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:20:11.112][ef$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:20:11.114][ef$get] Asked field names are: mass.
biodb.TRACE[2024-10-16 23:20:11.116][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-10-16 23:20:11.118][ef$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:20:11.120][ef$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:20:11.132][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2024-10-16 23:20:11.135][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-10-16 23:20:11.138][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:20:11.140][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:20:11.143][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-10-16 23:20:11.145][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-10-16 23:20:11.147][ef$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:20:11.149][ef$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:20:11.152][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-10-16 23:20:11.154][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-10-16 23:20:11.156][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:20:11.158][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:20:11.160][ef$get] Asked field names are: name.
biodb.TRACE[2024-10-16 23:20:11.163][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-10-16 23:20:11.165][ef$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:20:11.167][ef$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:20:11.170][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-10-16 23:20:11.172][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-10-16 23:20:11.174][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:20:11.176][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:20:11.178][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-10-16 23:20:11.180][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-10-16 23:20:11.182][ef$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:20:11.184][ef$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:20:11.187][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2024-10-16 23:20:11.189][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-10-16 23:20:11.191][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:20:11.194][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:20:11.197][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-10-16 23:20:11.199][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-10-16 23:20:11.202][ef$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:20:11.204][ef$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:20:11.207][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-10-16 23:20:11.209][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-10-16 23:20:11.211][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:20:11.213][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:20:11.215][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-10-16 23:20:11.217][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-10-16 23:20:11.219][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:20:11.221][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:20:11.223][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-10-16 23:20:11.225][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-10-16 23:20:11.227][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:20:11.229][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:20:11.231][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-10-16 23:20:11.233][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-10-16 23:20:11.235][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:20:11.237][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:20:11.239][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-10-16 23:20:11.241][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-10-16 23:20:11.243][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:20:11.245][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:20:11.247][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-10-16 23:20:11.250][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-10-16 23:20:11.251][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:20:11.253][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:20:11.255][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-10-16 23:20:11.258][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-10-16 23:20:11.260][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:20:11.262][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:20:11.264][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-10-16 23:20:11.266][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-10-16 23:20:11.268][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:20:11.270][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:20:11.272][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-10-16 23:20:11.274][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-10-16 23:20:11.276][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:20:11.278][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:20:11.280][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-10-16 23:20:11.282][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-10-16 23:20:11.284][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:20:11.286][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:20:11.288][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-10-16 23:20:11.290][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-10-16 23:20:11.292][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:20:11.294][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-10-16 23:20:11.296][self$createEntryFromContent] Accession numbers: 176803.
biodb.TRACE[2024-10-16 23:20:11.298][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-10-16 23:20:11.300][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-10-16 23:20:11.302][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:20:11.304][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:20:11.306][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-10-16 23:20:11.309][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-10-16 23:20:11.311][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:20:11.312][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:20:11.314][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-10-16 23:20:11.316][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-10-16 23:20:11.318][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:20:11.320][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-10-16 23:20:11.322][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-10-16 23:20:11.333][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-10-16 23:20:11.335][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-10-16 23:20:11.347][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-10-16 23:20:11.349][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-10-16 23:20:11.351][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-10-16 23:20:11.353][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-10-16 23:20:11.356][private$loadEntries] Creating entries from ids [1]: "176962".
biodb.DEBUG[2024-10-16 23:20:11.358][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2024-10-16 23:20:11.361][cch$loadFileContent] Trying to load 1 files from cache: [1]: "176962".
biodb.TRACE[2024-10-16 23:20:11.364][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-10-16 23:20:11.528][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/176962.xml".
biodb.DEBUG[2024-10-16 23:20:11.532][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2024-10-16 23:20:11.534][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2024-10-16 23:20:11.537][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2024-10-16 23:20:11.540][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-10-16 23:20:11.542][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-10-16 23:20:11.544][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-10-16 23:20:11.555][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-10-16 23:20:11.557][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-10-16 23:20:11.559][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-10-16 23:20:11.561][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-10-16 23:20:11.565][ef$get] Asked field names are: accession.
biodb.TRACE[2024-10-16 23:20:11.567][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-10-16 23:20:11.569][ef$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:20:11.571][ef$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:20:11.573][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-10-16 23:20:11.575][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-10-16 23:20:11.577][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:20:11.579][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:20:11.581][ef$get] Asked field names are: charge.
biodb.TRACE[2024-10-16 23:20:11.583][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-10-16 23:20:11.584][ef$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:20:11.586][ef$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:20:11.589][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-10-16 23:20:11.591][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-10-16 23:20:11.594][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:20:11.596][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:20:11.598][ef$get] Asked field names are: formula.
biodb.TRACE[2024-10-16 23:20:11.601][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-10-16 23:20:11.604][ef$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:20:11.606][ef$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:20:11.608][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-10-16 23:20:11.610][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-10-16 23:20:11.613][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:20:11.615][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:20:11.618][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-10-16 23:20:11.620][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-10-16 23:20:11.622][ef$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:20:11.624][ef$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:20:11.627][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-10-16 23:20:11.629][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-10-16 23:20:11.631][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:20:11.633][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:20:11.636][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-10-16 23:20:11.638][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-10-16 23:20:11.640][ef$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:20:11.642][ef$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:20:11.645][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-10-16 23:20:11.647][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-10-16 23:20:11.649][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:20:11.651][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:20:11.653][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-10-16 23:20:11.656][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-10-16 23:20:11.658][ef$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:20:11.660][ef$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:20:11.663][ef$get] Asked field names are: mass.
biodb.TRACE[2024-10-16 23:20:11.666][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-10-16 23:20:11.668][ef$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:20:11.670][ef$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:20:11.673][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2024-10-16 23:20:11.675][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-10-16 23:20:11.678][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:20:11.683][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:20:11.687][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-10-16 23:20:11.694][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-10-16 23:20:11.697][ef$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:20:11.699][ef$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:20:11.701][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-10-16 23:20:11.704][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-10-16 23:20:11.706][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:20:11.708][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:20:11.719][ef$get] Asked field names are: name.
biodb.TRACE[2024-10-16 23:20:11.721][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-10-16 23:20:11.724][ef$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:20:11.726][ef$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:20:11.729][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-10-16 23:20:11.732][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-10-16 23:20:11.734][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:20:11.736][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:20:11.740][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-10-16 23:20:11.742][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-10-16 23:20:11.744][ef$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:20:11.746][ef$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:20:11.749][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2024-10-16 23:20:11.751][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-10-16 23:20:11.754][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:20:11.756][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:20:11.759][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-10-16 23:20:11.761][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-10-16 23:20:11.764][ef$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:20:11.769][ef$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:20:11.772][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-10-16 23:20:11.775][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-10-16 23:20:11.777][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:20:11.779][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:20:11.782][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-10-16 23:20:11.784][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-10-16 23:20:11.786][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:20:11.788][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:20:11.790][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-10-16 23:20:11.792][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-10-16 23:20:11.794][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:20:11.797][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:20:11.799][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-10-16 23:20:11.802][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-10-16 23:20:11.804][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:20:11.805][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:20:11.808][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-10-16 23:20:11.810][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-10-16 23:20:11.812][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:20:11.813][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:20:11.815][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-10-16 23:20:11.818][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-10-16 23:20:11.819][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:20:11.821][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:20:11.823][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-10-16 23:20:11.825][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-10-16 23:20:11.827][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:20:11.829][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:20:11.831][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-10-16 23:20:11.834][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-10-16 23:20:11.836][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:20:11.838][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:20:11.840][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-10-16 23:20:11.843][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-10-16 23:20:11.845][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:20:11.847][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:20:11.850][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-10-16 23:20:11.852][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-10-16 23:20:11.854][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:20:11.856][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:20:11.858][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-10-16 23:20:11.860][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-10-16 23:20:11.862][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:20:11.863][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-10-16 23:20:11.865][self$createEntryFromContent] Accession numbers: 176962.
biodb.TRACE[2024-10-16 23:20:11.867][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-10-16 23:20:11.869][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-10-16 23:20:11.870][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:20:11.872][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:20:11.874][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-10-16 23:20:11.876][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-10-16 23:20:11.877][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:20:11.879][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:20:11.881][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-10-16 23:20:11.882][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-10-16 23:20:11.884][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:20:11.886][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-10-16 23:20:11.888][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-10-16 23:20:11.892][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-10-16 23:20:11.894][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-10-16 23:20:12.028][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-10-16 23:20:12.030][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-10-16 23:20:12.034][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-10-16 23:20:12.036][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-10-16 23:20:12.038][private$loadEntries] Creating entries from ids [1]: "198655".
biodb.DEBUG[2024-10-16 23:20:12.041][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2024-10-16 23:20:12.058][cch$loadFileContent] Trying to load 1 files from cache: [1]: "198655".
biodb.TRACE[2024-10-16 23:20:12.062][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-10-16 23:20:12.146][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/198655.xml".
biodb.DEBUG[2024-10-16 23:20:12.149][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2024-10-16 23:20:12.152][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2024-10-16 23:20:12.155][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2024-10-16 23:20:12.158][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-10-16 23:20:12.160][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-10-16 23:20:12.162][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-10-16 23:20:12.177][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-10-16 23:20:12.179][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-10-16 23:20:12.181][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-10-16 23:20:12.183][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-10-16 23:20:12.187][ef$get] Asked field names are: accession.
biodb.TRACE[2024-10-16 23:20:12.190][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-10-16 23:20:12.192][ef$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:20:12.194][ef$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:20:12.196][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-10-16 23:20:12.198][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-10-16 23:20:12.200][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:20:12.201][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:20:12.203][ef$get] Asked field names are: charge.
biodb.TRACE[2024-10-16 23:20:12.205][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-10-16 23:20:12.207][ef$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:20:12.209][ef$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:20:12.211][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-10-16 23:20:12.213][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-10-16 23:20:12.215][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:20:12.216][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:20:12.218][ef$get] Asked field names are: formula.
biodb.TRACE[2024-10-16 23:20:12.220][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-10-16 23:20:12.222][ef$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:20:12.224][ef$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:20:12.226][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-10-16 23:20:12.228][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-10-16 23:20:12.230][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:20:12.231][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:20:12.233][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-10-16 23:20:12.236][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-10-16 23:20:12.237][ef$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:20:12.239][ef$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:20:12.242][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-10-16 23:20:12.244][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-10-16 23:20:12.246][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:20:12.248][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:20:12.250][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-10-16 23:20:12.252][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-10-16 23:20:12.254][ef$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:20:12.256][ef$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:20:12.258][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-10-16 23:20:12.260][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-10-16 23:20:12.262][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:20:12.263][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:20:12.265][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-10-16 23:20:12.267][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-10-16 23:20:12.269][ef$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:20:12.271][ef$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:20:12.273][ef$get] Asked field names are: mass.
biodb.TRACE[2024-10-16 23:20:12.275][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-10-16 23:20:12.277][ef$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:20:12.279][ef$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:20:12.282][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2024-10-16 23:20:12.284][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-10-16 23:20:12.286][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:20:12.288][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:20:12.290][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-10-16 23:20:12.292][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-10-16 23:20:12.294][ef$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:20:12.296][ef$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:20:12.298][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-10-16 23:20:12.300][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-10-16 23:20:12.302][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:20:12.304][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:20:12.306][ef$get] Asked field names are: name.
biodb.TRACE[2024-10-16 23:20:12.308][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-10-16 23:20:12.310][ef$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:20:12.312][ef$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:20:12.315][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-10-16 23:20:12.317][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-10-16 23:20:12.319][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:20:12.321][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:20:12.323][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-10-16 23:20:12.325][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-10-16 23:20:12.327][ef$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:20:12.339][ef$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:20:12.342][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2024-10-16 23:20:12.344][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-10-16 23:20:12.347][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:20:12.349][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:20:12.351][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-10-16 23:20:12.353][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-10-16 23:20:12.355][ef$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:20:12.357][ef$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:20:12.360][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-10-16 23:20:12.362][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-10-16 23:20:12.364][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:20:12.366][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:20:12.368][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-10-16 23:20:12.370][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-10-16 23:20:12.372][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:20:12.374][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:20:12.376][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-10-16 23:20:12.378][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-10-16 23:20:12.380][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:20:12.382][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:20:12.384][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-10-16 23:20:12.386][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-10-16 23:20:12.388][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:20:12.390][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:20:12.392][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-10-16 23:20:12.395][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-10-16 23:20:12.396][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:20:12.398][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:20:12.401][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-10-16 23:20:12.403][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-10-16 23:20:12.405][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:20:12.406][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:20:12.409][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-10-16 23:20:12.411][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-10-16 23:20:12.413][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:20:12.414][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:20:12.416][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-10-16 23:20:12.419][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-10-16 23:20:12.421][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:20:12.423][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:20:12.425][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-10-16 23:20:12.427][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-10-16 23:20:12.429][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:20:12.431][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:20:12.433][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-10-16 23:20:12.435][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-10-16 23:20:12.437][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:20:12.439][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:20:12.441][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-10-16 23:20:12.444][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-10-16 23:20:12.446][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:20:12.448][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-10-16 23:20:12.450][self$createEntryFromContent] Accession numbers: 198655.
biodb.TRACE[2024-10-16 23:20:12.452][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-10-16 23:20:12.455][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-10-16 23:20:12.458][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:20:12.460][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:20:12.462][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-10-16 23:20:12.464][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-10-16 23:20:12.466][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:20:12.468][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:20:12.470][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-10-16 23:20:12.472][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-10-16 23:20:12.474][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:20:12.476][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-10-16 23:20:12.478][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-10-16 23:20:12.480][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-10-16 23:20:12.482][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-10-16 23:20:12.493][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-10-16 23:20:12.495][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-10-16 23:20:12.497][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-10-16 23:20:12.499][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-10-16 23:20:12.502][private$loadEntries] Creating entries from ids [1]: "215045".
biodb.DEBUG[2024-10-16 23:20:12.504][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2024-10-16 23:20:12.507][cch$loadFileContent] Trying to load 1 files from cache: [1]: "215045".
biodb.TRACE[2024-10-16 23:20:12.510][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-10-16 23:20:12.527][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/215045.xml".
biodb.DEBUG[2024-10-16 23:20:12.530][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2024-10-16 23:20:12.533][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2024-10-16 23:20:12.536][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2024-10-16 23:20:12.539][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-10-16 23:20:12.541][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-10-16 23:20:12.543][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-10-16 23:20:12.564][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-10-16 23:20:12.566][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-10-16 23:20:12.568][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-10-16 23:20:12.569][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-10-16 23:20:12.573][ef$get] Asked field names are: accession.
biodb.TRACE[2024-10-16 23:20:12.575][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-10-16 23:20:12.576][ef$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:20:12.577][ef$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:20:12.579][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-10-16 23:20:12.580][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-10-16 23:20:12.582][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:20:12.583][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:20:12.585][ef$get] Asked field names are: charge.
biodb.TRACE[2024-10-16 23:20:12.586][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-10-16 23:20:12.587][ef$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:20:12.588][ef$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:20:12.590][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-10-16 23:20:12.592][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-10-16 23:20:12.593][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:20:12.594][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:20:12.595][ef$get] Asked field names are: formula.
biodb.TRACE[2024-10-16 23:20:12.597][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-10-16 23:20:12.598][ef$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:20:12.599][ef$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:20:12.601][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-10-16 23:20:12.602][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-10-16 23:20:12.603][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:20:12.605][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:20:12.606][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-10-16 23:20:12.607][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-10-16 23:20:12.608][ef$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:20:12.610][ef$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:20:12.612][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-10-16 23:20:12.613][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-10-16 23:20:12.615][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:20:12.617][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:20:12.618][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-10-16 23:20:12.619][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-10-16 23:20:12.621][ef$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:20:12.622][ef$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:20:12.624][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-10-16 23:20:12.625][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-10-16 23:20:12.626][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:20:12.628][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:20:12.629][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-10-16 23:20:12.631][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-10-16 23:20:12.632][ef$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:20:12.633][ef$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:20:12.635][ef$get] Asked field names are: mass.
biodb.TRACE[2024-10-16 23:20:12.636][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-10-16 23:20:12.638][ef$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:20:12.639][ef$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:20:12.641][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2024-10-16 23:20:12.643][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-10-16 23:20:12.644][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:20:12.646][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:20:12.648][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-10-16 23:20:12.651][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-10-16 23:20:12.652][ef$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:20:12.653][ef$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:20:12.655][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-10-16 23:20:12.656][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-10-16 23:20:12.658][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:20:12.659][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:20:12.661][ef$get] Asked field names are: name.
biodb.TRACE[2024-10-16 23:20:12.662][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-10-16 23:20:12.663][ef$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:20:12.664][ef$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:20:12.666][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-10-16 23:20:12.667][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-10-16 23:20:12.669][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:20:12.670][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:20:12.672][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-10-16 23:20:12.674][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-10-16 23:20:12.676][ef$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:20:12.678][ef$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:20:12.680][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2024-10-16 23:20:12.682][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-10-16 23:20:12.683][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:20:12.684][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:20:12.686][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-10-16 23:20:12.687][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-10-16 23:20:12.689][ef$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:20:12.690][ef$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:20:12.691][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-10-16 23:20:12.699][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-10-16 23:20:12.701][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:20:12.704][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:20:12.706][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-10-16 23:20:12.708][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-10-16 23:20:12.709][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:20:12.711][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:20:12.712][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-10-16 23:20:12.714][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-10-16 23:20:12.715][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:20:12.716][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:20:12.717][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-10-16 23:20:12.719][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-10-16 23:20:12.720][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:20:12.721][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:20:12.722][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-10-16 23:20:12.724][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-10-16 23:20:12.725][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:20:12.727][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:20:12.729][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-10-16 23:20:12.731][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-10-16 23:20:12.733][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:20:12.735][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:20:12.737][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-10-16 23:20:12.739][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-10-16 23:20:12.740][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:20:12.742][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:20:12.744][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-10-16 23:20:12.746][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-10-16 23:20:12.748][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:20:12.750][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:20:12.752][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-10-16 23:20:12.754][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-10-16 23:20:12.756][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:20:12.758][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:20:12.760][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-10-16 23:20:12.762][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-10-16 23:20:12.764][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:20:12.765][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:20:12.767][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-10-16 23:20:12.769][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-10-16 23:20:12.771][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:20:12.773][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-10-16 23:20:12.775][self$createEntryFromContent] Accession numbers: 215045.
biodb.TRACE[2024-10-16 23:20:12.777][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-10-16 23:20:12.779][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-10-16 23:20:12.781][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:20:12.783][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:20:12.785][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-10-16 23:20:12.787][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-10-16 23:20:12.789][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:20:12.791][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:20:12.792][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-10-16 23:20:12.794][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-10-16 23:20:12.796][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:20:12.798][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-10-16 23:20:12.840][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=squalene&searchCategory=ALL NAMES&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2024-10-16 23:20:12.846][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-10-16 23:20:12.848][cch$loadFileContent] Trying to load 1 files from cache: [1]: "b9623d99e42a57d0f12e83910c2ffbf2".
biodb.TRACE[2024-10-16 23:20:12.851][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-10-16 23:20:12.854][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/b9623d99e42a57d0f12e83910c2ffbf2.content".
biodb.DEBUG[2024-10-16 23:20:12.859][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-10-16 23:20:12.861][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-10-16 23:20:12.863][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-10-16 23:20:12.873][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-10-16 23:20:12.875][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-10-16 23:20:12.877][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-10-16 23:20:12.887][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-10-16 23:20:12.890][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-10-16 23:20:12.892][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-10-16 23:20:12.894][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:20:12.896][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:20:12.898][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-10-16 23:20:12.900][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-10-16 23:20:12.902][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:20:12.903][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:20:12.905][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-10-16 23:20:12.907][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-10-16 23:20:12.909][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:20:12.911][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-10-16 23:20:12.913][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-10-16 23:20:12.914][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-10-16 23:20:12.916][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-10-16 23:20:12.926][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-10-16 23:20:12.928][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-10-16 23:20:12.930][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-10-16 23:20:12.932][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-10-16 23:20:12.934][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-10-16 23:20:12.936][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-10-16 23:20:12.938][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:20:12.940][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:20:12.942][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-10-16 23:20:12.944][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-10-16 23:20:12.946][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:20:12.947][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:20:12.949][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-10-16 23:20:12.950][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-10-16 23:20:12.951][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:20:12.953][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:20:12.955][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-10-16 23:20:12.957][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-10-16 23:20:12.958][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:20:12.959][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:20:12.961][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-10-16 23:20:12.963][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-10-16 23:20:12.965][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:20:12.967][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-10-16 23:20:12.969][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-10-16 23:20:12.970][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-10-16 23:20:12.971][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-10-16 23:20:12.979][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-10-16 23:20:12.980][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-10-16 23:20:12.982][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-10-16 23:20:12.983][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-10-16 23:20:12.984][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-10-16 23:20:12.986][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-10-16 23:20:12.988][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:20:12.990][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:20:12.991][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-10-16 23:20:12.993][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-10-16 23:20:12.994][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:20:12.996][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:20:12.998][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-10-16 23:20:13.000][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-10-16 23:20:13.002][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:20:13.004][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:20:13.005][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-10-16 23:20:13.006][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-10-16 23:20:13.008][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:20:13.009][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:20:13.010][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-10-16 23:20:13.011][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-10-16 23:20:13.013][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:20:13.014][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-10-16 23:20:13.016][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-10-16 23:20:13.017][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-10-16 23:20:13.019][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-10-16 23:20:13.028][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-10-16 23:20:13.030][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-10-16 23:20:13.031][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-10-16 23:20:13.032][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-10-16 23:20:13.034][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-10-16 23:20:13.036][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-10-16 23:20:13.038][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:20:13.040][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:20:13.041][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-10-16 23:20:13.042][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-10-16 23:20:13.044][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:20:13.051][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:20:13.053][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-10-16 23:20:13.055][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-10-16 23:20:13.056][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:20:13.058][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:20:13.059][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-10-16 23:20:13.060][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-10-16 23:20:13.061][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:20:13.063][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:20:13.064][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-10-16 23:20:13.065][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-10-16 23:20:13.067][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:20:13.068][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-10-16 23:20:13.069][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-10-16 23:20:13.071][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-10-16 23:20:13.072][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-10-16 23:20:13.080][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-10-16 23:20:13.081][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-10-16 23:20:13.082][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-10-16 23:20:13.083][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-10-16 23:20:13.085][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-10-16 23:20:13.086][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-10-16 23:20:13.087][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:20:13.089][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:20:13.090][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-10-16 23:20:13.091][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-10-16 23:20:13.093][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:20:13.094][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:20:13.095][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-10-16 23:20:13.097][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-10-16 23:20:13.098][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:20:13.099][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-10-16 23:20:13.100][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-10-16 23:20:13.102][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-10-16 23:20:13.103][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-10-16 23:20:13.112][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-10-16 23:20:13.113][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-10-16 23:20:13.114][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-10-16 23:20:13.115][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-10-16 23:20:13.117][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-10-16 23:20:13.118][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-10-16 23:20:13.120][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:20:13.121][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:20:13.123][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-10-16 23:20:13.124][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-10-16 23:20:13.125][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:20:13.126][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:20:13.128][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-10-16 23:20:13.130][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-10-16 23:20:13.131][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:20:13.132][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-10-16 23:20:13.134][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-10-16 23:20:13.135][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-10-16 23:20:13.137][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-10-16 23:20:13.146][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-10-16 23:20:13.147][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-10-16 23:20:13.149][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-10-16 23:20:13.150][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-10-16 23:20:13.152][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-10-16 23:20:13.153][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-10-16 23:20:13.155][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:20:13.157][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:20:13.159][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-10-16 23:20:13.161][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-10-16 23:20:13.163][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:20:13.164][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:20:13.165][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-10-16 23:20:13.167][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-10-16 23:20:13.168][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:20:13.169][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-10-16 23:20:13.170][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-10-16 23:20:13.171][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-10-16 23:20:13.172][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-10-16 23:20:13.180][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-10-16 23:20:13.181][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-10-16 23:20:13.182][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-10-16 23:20:13.183][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-10-16 23:20:13.185][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-10-16 23:20:13.192][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-10-16 23:20:13.194][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:20:13.196][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:20:13.199][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-10-16 23:20:13.201][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-10-16 23:20:13.203][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:20:13.205][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:20:13.207][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-10-16 23:20:13.209][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-10-16 23:20:13.211][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:20:13.213][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-10-16 23:20:13.215][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-10-16 23:20:13.217][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-10-16 23:20:13.219][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-10-16 23:20:13.229][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-10-16 23:20:13.231][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-10-16 23:20:13.232][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-10-16 23:20:13.233][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-10-16 23:20:13.235][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-10-16 23:20:13.237][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-10-16 23:20:13.239][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:20:13.241][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:20:13.242][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-10-16 23:20:13.244][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-10-16 23:20:13.245][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:20:13.246][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:20:13.248][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-10-16 23:20:13.249][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-10-16 23:20:13.250][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:20:13.251][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-10-16 23:20:13.253][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-10-16 23:20:13.254][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-10-16 23:20:13.255][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-10-16 23:20:13.262][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-10-16 23:20:13.263][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-10-16 23:20:13.265][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-10-16 23:20:13.266][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-10-16 23:20:13.269][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-10-16 23:20:13.271][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-10-16 23:20:13.273][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:20:13.275][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:20:13.277][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-10-16 23:20:13.279][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-10-16 23:20:13.281][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:20:13.283][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:20:13.285][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-10-16 23:20:13.288][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-10-16 23:20:13.289][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:20:13.293][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-10-16 23:20:13.295][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-10-16 23:20:13.297][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-10-16 23:20:13.299][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-10-16 23:20:13.736][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-10-16 23:20:13.738][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-10-16 23:20:13.739][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-10-16 23:20:13.740][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-10-16 23:20:13.741][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-10-16 23:20:13.743][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-10-16 23:20:13.744][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:20:13.745][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:20:13.746][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-10-16 23:20:13.748][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-10-16 23:20:13.749][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:20:13.750][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:20:13.751][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-10-16 23:20:13.752][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-10-16 23:20:13.754][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:20:13.755][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-10-16 23:20:13.756][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-10-16 23:20:13.757][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-10-16 23:20:13.759][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-10-16 23:20:13.775][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-10-16 23:20:13.777][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-10-16 23:20:13.779][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-10-16 23:20:13.781][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-10-16 23:20:13.783][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-10-16 23:20:13.785][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-10-16 23:20:13.788][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:20:13.797][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:20:13.800][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-10-16 23:20:13.803][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-10-16 23:20:13.805][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:20:13.807][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:20:13.808][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-10-16 23:20:13.810][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-10-16 23:20:13.812][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:20:13.814][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-10-16 23:20:13.816][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-10-16 23:20:13.818][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-10-16 23:20:13.819][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-10-16 23:20:13.830][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-10-16 23:20:13.832][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-10-16 23:20:13.834][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-10-16 23:20:13.836][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-10-16 23:20:13.838][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-10-16 23:20:13.841][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-10-16 23:20:13.843][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:20:13.845][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:20:13.847][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-10-16 23:20:13.849][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-10-16 23:20:13.851][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:20:13.853][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:20:13.855][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-10-16 23:20:13.857][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-10-16 23:20:13.859][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:20:13.861][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-10-16 23:20:13.863][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-10-16 23:20:13.865][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-10-16 23:20:13.866][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-10-16 23:20:13.897][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-10-16 23:20:13.899][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-10-16 23:20:13.901][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-10-16 23:20:13.903][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-10-16 23:20:13.905][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-10-16 23:20:13.908][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-10-16 23:20:13.913][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:20:13.916][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:20:13.919][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-10-16 23:20:13.922][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-10-16 23:20:13.927][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:20:13.929][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:20:13.935][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-10-16 23:20:13.939][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-10-16 23:20:13.941][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:20:13.943][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-10-16 23:20:13.946][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-10-16 23:20:13.948][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-10-16 23:20:13.950][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-10-16 23:20:13.963][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-10-16 23:20:13.965][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-10-16 23:20:13.967][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-10-16 23:20:13.969][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-10-16 23:20:13.972][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-10-16 23:20:13.974][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-10-16 23:20:13.976][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:20:13.978][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:20:13.980][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-10-16 23:20:13.982][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-10-16 23:20:13.984][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:20:13.986][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:20:13.989][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-10-16 23:20:13.991][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-10-16 23:20:13.993][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:20:13.994][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-10-16 23:20:13.997][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-10-16 23:20:13.998][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-10-16 23:20:14.000][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-10-16 23:20:14.012][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-10-16 23:20:14.014][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-10-16 23:20:14.016][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-10-16 23:20:14.018][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-10-16 23:20:14.021][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-10-16 23:20:14.023][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-10-16 23:20:14.025][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:20:14.027][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:20:14.029][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-10-16 23:20:14.032][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-10-16 23:20:14.044][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:20:14.047][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:20:14.049][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-10-16 23:20:14.052][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-10-16 23:20:14.054][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:20:14.056][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-10-16 23:20:14.059][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-10-16 23:20:14.060][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-10-16 23:20:14.062][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-10-16 23:20:14.153][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-10-16 23:20:14.156][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-10-16 23:20:14.158][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-10-16 23:20:14.160][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-10-16 23:20:14.162][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-10-16 23:20:14.165][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-10-16 23:20:14.167][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:20:14.169][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:20:14.171][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-10-16 23:20:14.173][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-10-16 23:20:14.175][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:20:14.177][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:20:14.179][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-10-16 23:20:14.181][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-10-16 23:20:14.183][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:20:14.185][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-10-16 23:20:14.187][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-10-16 23:20:14.189][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-10-16 23:20:14.191][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-10-16 23:20:14.203][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-10-16 23:20:14.205][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-10-16 23:20:14.207][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-10-16 23:20:14.209][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-10-16 23:20:14.211][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-10-16 23:20:14.213][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-10-16 23:20:14.215][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:20:14.217][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:20:14.219][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-10-16 23:20:14.221][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-10-16 23:20:14.223][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:20:14.225][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:20:14.227][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-10-16 23:20:14.229][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-10-16 23:20:14.231][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:20:14.233][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-10-16 23:20:14.235][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-10-16 23:20:14.237][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-10-16 23:20:14.239][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-10-16 23:20:14.253][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-10-16 23:20:14.255][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-10-16 23:20:14.257][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-10-16 23:20:14.259][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-10-16 23:20:14.261][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-10-16 23:20:14.263][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-10-16 23:20:14.265][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:20:14.267][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:20:14.269][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-10-16 23:20:14.272][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-10-16 23:20:14.274][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:20:14.276][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:20:14.278][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-10-16 23:20:14.280][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-10-16 23:20:14.283][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:20:14.285][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-10-16 23:20:14.289][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-10-16 23:20:14.292][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-10-16 23:20:14.295][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-10-16 23:20:14.308][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-10-16 23:20:14.311][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-10-16 23:20:14.313][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-10-16 23:20:14.314][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-10-16 23:20:14.317][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-10-16 23:20:14.319][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-10-16 23:20:14.321][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:20:14.323][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:20:14.326][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-10-16 23:20:14.332][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-10-16 23:20:14.336][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:20:14.338][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:20:14.357][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-10-16 23:20:14.360][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-10-16 23:20:14.362][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:20:14.365][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:20:14.428][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-10-16 23:20:14.431][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-10-16 23:20:14.433][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:20:14.435][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:20:14.437][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-10-16 23:20:14.439][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-10-16 23:20:14.441][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:20:14.443][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:20:14.445][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-10-16 23:20:14.447][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-10-16 23:20:14.449][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:20:14.451][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:20:14.453][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-10-16 23:20:14.455][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-10-16 23:20:14.457][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:20:14.459][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:20:14.461][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-10-16 23:20:14.463][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-10-16 23:20:14.465][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:20:14.467][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-10-16 23:20:14.512][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.39124*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2024-10-16 23:20:14.520][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-10-16 23:20:14.523][cch$loadFileContent] Trying to load 1 files from cache: [1]: "c5171beada848a87ef2ffa10427d9be3".
biodb.TRACE[2024-10-16 23:20:14.526][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-10-16 23:20:14.609][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/c5171beada848a87ef2ffa10427d9be3.content".
biodb.DEBUG[2024-10-16 23:20:14.616][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.39125*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2024-10-16 23:20:14.622][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-10-16 23:20:14.625][cch$loadFileContent] Trying to load 1 files from cache: [1]: "750e63ff76a843f016511fa71c89113e".
biodb.TRACE[2024-10-16 23:20:14.628][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-10-16 23:20:14.725][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/750e63ff76a843f016511fa71c89113e.content".
biodb.DEBUG[2024-10-16 23:20:14.730][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-10-16 23:20:14.733][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-10-16 23:20:14.735][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-10-16 23:20:14.885][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-10-16 23:20:14.888][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-10-16 23:20:14.890][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-10-16 23:20:14.893][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-10-16 23:20:14.895][private$loadEntries] Creating entries from ids [1]: "4648".
biodb.DEBUG[2024-10-16 23:20:14.898][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2024-10-16 23:20:14.901][cch$loadFileContent] Trying to load 1 files from cache: [1]: "4648".
biodb.TRACE[2024-10-16 23:20:14.904][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-10-16 23:20:14.955][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/4648.xml".
biodb.DEBUG[2024-10-16 23:20:14.958][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2024-10-16 23:20:14.961][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2024-10-16 23:20:14.963][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2024-10-16 23:20:14.966][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-10-16 23:20:14.968][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-10-16 23:20:15.089][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-10-16 23:20:15.101][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-10-16 23:20:15.104][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-10-16 23:20:15.106][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-10-16 23:20:15.108][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-10-16 23:20:15.113][ef$get] Asked field names are: accession.
biodb.TRACE[2024-10-16 23:20:15.248][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-10-16 23:20:15.250][ef$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:20:15.253][ef$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:20:15.255][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-10-16 23:20:15.257][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-10-16 23:20:15.259][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:20:15.261][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:20:15.264][ef$get] Asked field names are: charge.
biodb.TRACE[2024-10-16 23:20:15.266][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-10-16 23:20:15.268][ef$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:20:15.270][ef$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:20:15.272][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-10-16 23:20:15.274][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-10-16 23:20:15.276][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:20:15.278][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:20:15.280][ef$get] Asked field names are: formula.
biodb.TRACE[2024-10-16 23:20:15.282][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-10-16 23:20:15.284][ef$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:20:15.286][ef$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:20:15.288][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-10-16 23:20:15.290][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-10-16 23:20:15.292][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:20:15.294][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:20:15.297][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-10-16 23:20:15.301][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-10-16 23:20:15.303][ef$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:20:15.305][ef$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:20:15.308][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-10-16 23:20:15.312][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-10-16 23:20:15.314][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:20:15.316][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:20:15.318][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-10-16 23:20:15.321][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-10-16 23:20:15.323][ef$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:20:15.324][ef$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:20:15.327][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-10-16 23:20:15.329][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-10-16 23:20:15.331][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:20:15.333][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:20:15.335][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-10-16 23:20:15.337][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-10-16 23:20:15.339][ef$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:20:15.341][ef$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:20:15.343][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-10-16 23:20:15.346][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-10-16 23:20:15.348][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:20:15.350][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:20:15.352][ef$get] Asked field names are: mass.
biodb.TRACE[2024-10-16 23:20:15.355][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-10-16 23:20:15.356][ef$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:20:15.358][ef$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:20:15.361][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2024-10-16 23:20:15.363][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-10-16 23:20:15.365][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:20:15.367][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:20:15.369][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-10-16 23:20:15.371][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-10-16 23:20:15.373][ef$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:20:15.375][ef$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:20:15.387][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-10-16 23:20:15.389][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-10-16 23:20:15.392][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:20:15.394][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:20:15.397][ef$get] Asked field names are: name.
biodb.TRACE[2024-10-16 23:20:15.399][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-10-16 23:20:15.401][ef$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:20:15.403][ef$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:20:15.406][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-10-16 23:20:15.408][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-10-16 23:20:15.410][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:20:15.412][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:20:15.414][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-10-16 23:20:15.416][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-10-16 23:20:15.418][ef$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:20:15.419][ef$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:20:15.422][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2024-10-16 23:20:15.424][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-10-16 23:20:15.426][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:20:15.428][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:20:15.430][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-10-16 23:20:15.432][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-10-16 23:20:15.434][ef$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:20:15.436][ef$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:20:15.438][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-10-16 23:20:15.440][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-10-16 23:20:15.442][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:20:15.444][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:20:15.446][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-10-16 23:20:15.448][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-10-16 23:20:15.450][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:20:15.452][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:20:15.454][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-10-16 23:20:15.456][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-10-16 23:20:15.458][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:20:15.460][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:20:15.462][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-10-16 23:20:15.464][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-10-16 23:20:15.466][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:20:15.467][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:20:15.469][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-10-16 23:20:15.472][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-10-16 23:20:15.473][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:20:15.475][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:20:15.478][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-10-16 23:20:15.480][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-10-16 23:20:15.481][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:20:15.483][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:20:15.485][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-10-16 23:20:15.487][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-10-16 23:20:15.489][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:20:15.491][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:20:15.494][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-10-16 23:20:15.496][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-10-16 23:20:15.498][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:20:15.500][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:20:15.502][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-10-16 23:20:15.505][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-10-16 23:20:15.507][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:20:15.509][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:20:15.511][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-10-16 23:20:15.513][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-10-16 23:20:15.514][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:20:15.516][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:20:15.518][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-10-16 23:20:15.520][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-10-16 23:20:15.522][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:20:15.526][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-10-16 23:20:15.528][self$createEntryFromContent] Accession numbers: 4648.
biodb.TRACE[2024-10-16 23:20:15.531][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-10-16 23:20:15.533][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-10-16 23:20:15.535][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:20:15.537][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:20:15.539][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-10-16 23:20:15.541][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-10-16 23:20:15.543][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:20:15.545][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:20:15.547][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-10-16 23:20:15.550][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-10-16 23:20:15.552][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:20:15.554][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-10-16 23:20:15.556][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-10-16 23:20:15.558][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-10-16 23:20:15.560][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-10-16 23:20:15.571][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-10-16 23:20:15.583][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-10-16 23:20:15.585][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-10-16 23:20:15.688][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-10-16 23:20:15.691][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-10-16 23:20:15.694][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-10-16 23:20:15.696][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:20:15.698][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:20:15.700][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-10-16 23:20:15.707][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-10-16 23:20:15.709][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:20:15.711][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:20:15.713][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-10-16 23:20:15.716][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-10-16 23:20:15.719][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:20:15.721][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-10-16 23:20:15.723][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-10-16 23:20:15.725][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-10-16 23:20:15.727][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-10-16 23:20:15.740][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-10-16 23:20:15.743][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-10-16 23:20:15.745][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-10-16 23:20:15.747][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-10-16 23:20:15.749][private$loadEntries] Creating entries from ids [1]: "62447".
biodb.DEBUG[2024-10-16 23:20:15.857][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2024-10-16 23:20:15.861][cch$loadFileContent] Trying to load 1 files from cache: [1]: "62447".
biodb.TRACE[2024-10-16 23:20:15.864][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-10-16 23:20:15.884][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/62447.xml".
biodb.DEBUG[2024-10-16 23:20:15.887][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2024-10-16 23:20:15.890][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2024-10-16 23:20:15.893][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2024-10-16 23:20:15.896][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-10-16 23:20:15.899][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-10-16 23:20:15.900][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-10-16 23:20:15.912][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-10-16 23:20:15.914][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-10-16 23:20:15.916][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-10-16 23:20:15.918][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-10-16 23:20:15.923][ef$get] Asked field names are: accession.
biodb.TRACE[2024-10-16 23:20:15.925][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-10-16 23:20:15.927][ef$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:20:15.930][ef$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:20:15.932][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-10-16 23:20:15.934][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-10-16 23:20:15.936][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:20:15.939][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:20:15.941][ef$get] Asked field names are: charge.
biodb.TRACE[2024-10-16 23:20:15.943][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-10-16 23:20:15.945][ef$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:20:15.947][ef$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:20:15.950][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-10-16 23:20:15.952][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-10-16 23:20:15.954][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:20:15.956][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:20:15.958][ef$get] Asked field names are: formula.
biodb.TRACE[2024-10-16 23:20:15.960][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-10-16 23:20:15.962][ef$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:20:15.964][ef$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:20:15.966][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-10-16 23:20:15.968][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-10-16 23:20:15.970][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:20:15.972][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:20:15.974][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-10-16 23:20:15.976][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-10-16 23:20:15.978][ef$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:20:15.980][ef$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:20:15.982][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-10-16 23:20:15.984][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-10-16 23:20:15.986][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:20:15.988][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:20:15.990][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-10-16 23:20:15.992][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-10-16 23:20:15.994][ef$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:20:15.996][ef$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:20:15.998][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-10-16 23:20:16.000][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-10-16 23:20:16.002][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:20:16.004][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:20:16.006][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-10-16 23:20:16.008][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-10-16 23:20:16.010][ef$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:20:16.237][ef$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:20:16.240][ef$get] Asked field names are: mass.
biodb.TRACE[2024-10-16 23:20:16.242][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-10-16 23:20:16.245][ef$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:20:16.247][ef$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:20:16.249][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2024-10-16 23:20:16.251][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-10-16 23:20:16.253][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:20:16.255][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:20:16.258][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-10-16 23:20:16.260][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-10-16 23:20:16.262][ef$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:20:16.264][ef$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:20:16.266][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-10-16 23:20:16.268][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-10-16 23:20:16.270][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:20:16.272][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:20:16.275][ef$get] Asked field names are: name.
biodb.TRACE[2024-10-16 23:20:16.277][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-10-16 23:20:16.279][ef$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:20:16.281][ef$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:20:16.283][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-10-16 23:20:16.285][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-10-16 23:20:16.287][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:20:16.289][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:20:16.292][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-10-16 23:20:16.294][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-10-16 23:20:16.296][ef$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:20:16.297][ef$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:20:16.300][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2024-10-16 23:20:16.302][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-10-16 23:20:16.304][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:20:16.305][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:20:16.307][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-10-16 23:20:16.310][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-10-16 23:20:16.311][ef$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:20:16.313][ef$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:20:16.316][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-10-16 23:20:16.318][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-10-16 23:20:16.320][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:20:16.322][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:20:16.324][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-10-16 23:20:16.326][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-10-16 23:20:16.328][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:20:16.330][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:20:16.332][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-10-16 23:20:16.334][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-10-16 23:20:16.336][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:20:16.337][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:20:16.339][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-10-16 23:20:16.341][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-10-16 23:20:16.343][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:20:16.345][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:20:16.347][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-10-16 23:20:16.349][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-10-16 23:20:16.351][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:20:16.353][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:20:16.355][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-10-16 23:20:16.357][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-10-16 23:20:16.359][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:20:16.360][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:20:16.363][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-10-16 23:20:16.365][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-10-16 23:20:16.367][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:20:16.368][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:20:16.370][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-10-16 23:20:16.373][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-10-16 23:20:16.374][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:20:16.376][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:20:16.378][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-10-16 23:20:16.381][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-10-16 23:20:16.382][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:20:16.384][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:20:16.386][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-10-16 23:20:16.388][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-10-16 23:20:16.390][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:20:16.392][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:20:16.394][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-10-16 23:20:16.396][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-10-16 23:20:16.398][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:20:16.400][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-10-16 23:20:16.402][self$createEntryFromContent] Accession numbers: 62447.
biodb.TRACE[2024-10-16 23:20:16.404][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-10-16 23:20:16.406][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-10-16 23:20:16.408][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:20:16.410][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:20:16.412][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-10-16 23:20:16.414][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-10-16 23:20:16.416][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:20:16.418][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:20:16.420][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-10-16 23:20:16.422][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-10-16 23:20:16.424][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:20:16.426][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-10-16 23:20:16.668][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=squalene&searchCategory=ALL NAMES&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2024-10-16 23:20:16.675][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-10-16 23:20:16.678][cch$loadFileContent] Trying to load 1 files from cache: [1]: "b9623d99e42a57d0f12e83910c2ffbf2".
biodb.TRACE[2024-10-16 23:20:16.681][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-10-16 23:20:16.685][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/b9623d99e42a57d0f12e83910c2ffbf2.content".
biodb.DEBUG[2024-10-16 23:20:16.691][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-10-16 23:20:16.693][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-10-16 23:20:16.695][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-10-16 23:20:16.708][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-10-16 23:20:16.710][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-10-16 23:20:16.712][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-10-16 23:20:16.714][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-10-16 23:20:16.717][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-10-16 23:20:16.719][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-10-16 23:20:16.721][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:20:16.723][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:20:16.725][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-10-16 23:20:16.728][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-10-16 23:20:16.730][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:20:16.732][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:20:16.734][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-10-16 23:20:16.736][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-10-16 23:20:16.738][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:20:16.740][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-10-16 23:20:16.743][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-10-16 23:20:16.745][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-10-16 23:20:16.746][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-10-16 23:20:16.970][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-10-16 23:20:16.975][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-10-16 23:20:16.977][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-10-16 23:20:16.979][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-10-16 23:20:16.982][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-10-16 23:20:16.984][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-10-16 23:20:16.986][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:20:16.989][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:20:16.991][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-10-16 23:20:16.993][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-10-16 23:20:16.996][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:20:16.998][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:20:17.000][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-10-16 23:20:17.003][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-10-16 23:20:17.006][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:20:17.008][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:20:17.010][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-10-16 23:20:17.012][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-10-16 23:20:17.014][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:20:17.017][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:20:17.019][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-10-16 23:20:17.022][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-10-16 23:20:17.024][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:20:17.026][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-10-16 23:20:17.028][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-10-16 23:20:17.031][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-10-16 23:20:17.033][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-10-16 23:20:17.052][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-10-16 23:20:17.054][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-10-16 23:20:17.056][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-10-16 23:20:17.058][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-10-16 23:20:17.061][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-10-16 23:20:17.129][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-10-16 23:20:17.132][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:20:17.134][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:20:17.136][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-10-16 23:20:17.139][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-10-16 23:20:17.141][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:20:17.144][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:20:17.146][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-10-16 23:20:17.149][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-10-16 23:20:17.151][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:20:17.154][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:20:17.156][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-10-16 23:20:17.158][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-10-16 23:20:17.161][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:20:17.163][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:20:17.165][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-10-16 23:20:17.167][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-10-16 23:20:17.170][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:20:17.172][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-10-16 23:20:17.174][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-10-16 23:20:17.176][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-10-16 23:20:17.178][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-10-16 23:20:17.343][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-10-16 23:20:17.346][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-10-16 23:20:17.348][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-10-16 23:20:17.351][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-10-16 23:20:17.353][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-10-16 23:20:17.356][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-10-16 23:20:17.358][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:20:17.361][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:20:17.363][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-10-16 23:20:17.366][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-10-16 23:20:17.368][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:20:17.371][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:20:17.502][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-10-16 23:20:17.505][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-10-16 23:20:17.508][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:20:17.510][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:20:17.512][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-10-16 23:20:17.515][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-10-16 23:20:17.517][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:20:17.520][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:20:17.522][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-10-16 23:20:17.525][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-10-16 23:20:17.527][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:20:17.531][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-10-16 23:20:17.534][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-10-16 23:20:17.536][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-10-16 23:20:17.618][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-10-16 23:20:17.630][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-10-16 23:20:17.633][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-10-16 23:20:17.635][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-10-16 23:20:17.637][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-10-16 23:20:17.640][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-10-16 23:20:17.642][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-10-16 23:20:17.644][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:20:17.646][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:20:17.649][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-10-16 23:20:17.651][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-10-16 23:20:17.653][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:20:17.655][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:20:17.657][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-10-16 23:20:17.659][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-10-16 23:20:17.661][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:20:17.663][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-10-16 23:20:17.665][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-10-16 23:20:17.667][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-10-16 23:20:17.669][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-10-16 23:20:17.681][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-10-16 23:20:17.684][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-10-16 23:20:17.686][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-10-16 23:20:17.688][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-10-16 23:20:17.691][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-10-16 23:20:17.693][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-10-16 23:20:17.696][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:20:17.698][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:20:17.787][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-10-16 23:20:17.790][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-10-16 23:20:17.792][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:20:17.795][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:20:17.797][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-10-16 23:20:17.800][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-10-16 23:20:17.803][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:20:17.805][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-10-16 23:20:17.807][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-10-16 23:20:17.809][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-10-16 23:20:17.811][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-10-16 23:20:17.895][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-10-16 23:20:17.901][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-10-16 23:20:17.909][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-10-16 23:20:17.912][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-10-16 23:20:17.915][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-10-16 23:20:17.917][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-10-16 23:20:17.919][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:20:17.922][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:20:17.924][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-10-16 23:20:17.927][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-10-16 23:20:17.929][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:20:17.931][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:20:17.934][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-10-16 23:20:17.936][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-10-16 23:20:17.945][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:20:17.947][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-10-16 23:20:17.950][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-10-16 23:20:17.952][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-10-16 23:20:17.954][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-10-16 23:20:18.053][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-10-16 23:20:18.055][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-10-16 23:20:18.058][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-10-16 23:20:18.060][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-10-16 23:20:18.062][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-10-16 23:20:18.065][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-10-16 23:20:18.068][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:20:18.070][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:20:18.072][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-10-16 23:20:18.075][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-10-16 23:20:18.077][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:20:18.181][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:20:18.183][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-10-16 23:20:18.186][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-10-16 23:20:18.188][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:20:18.192][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-10-16 23:20:18.194][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-10-16 23:20:18.197][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-10-16 23:20:18.199][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-10-16 23:20:18.211][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-10-16 23:20:18.214][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-10-16 23:20:18.216][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-10-16 23:20:18.218][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-10-16 23:20:18.221][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-10-16 23:20:18.223][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-10-16 23:20:18.225][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:20:18.227][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:20:18.230][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-10-16 23:20:18.232][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-10-16 23:20:18.234][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:20:18.236][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:20:18.239][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-10-16 23:20:18.241][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-10-16 23:20:18.244][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:20:18.246][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-10-16 23:20:18.248][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-10-16 23:20:18.250][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-10-16 23:20:18.253][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-10-16 23:20:18.273][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-10-16 23:20:18.275][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-10-16 23:20:18.277][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-10-16 23:20:18.279][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-10-16 23:20:18.282][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-10-16 23:20:18.284][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-10-16 23:20:18.286][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:20:18.288][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:20:18.291][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-10-16 23:20:18.293][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-10-16 23:20:18.295][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:20:18.297][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:20:18.300][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-10-16 23:20:18.302][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-10-16 23:20:18.304][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:20:18.306][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-10-16 23:20:18.308][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-10-16 23:20:18.310][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-10-16 23:20:18.312][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-10-16 23:20:18.410][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-10-16 23:20:18.524][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-10-16 23:20:18.532][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-10-16 23:20:18.535][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-10-16 23:20:18.537][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-10-16 23:20:18.540][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-10-16 23:20:18.542][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:20:18.543][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:20:18.545][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-10-16 23:20:18.548][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-10-16 23:20:18.549][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:20:18.551][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:20:18.553][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-10-16 23:20:18.555][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-10-16 23:20:18.557][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:20:18.559][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-10-16 23:20:18.560][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-10-16 23:20:18.562][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-10-16 23:20:18.564][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-10-16 23:20:18.579][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-10-16 23:20:18.581][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-10-16 23:20:18.583][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-10-16 23:20:18.682][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-10-16 23:20:18.685][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-10-16 23:20:18.687][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-10-16 23:20:18.689][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:20:18.691][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:20:18.694][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-10-16 23:20:18.696][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-10-16 23:20:18.698][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:20:18.699][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:20:18.701][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-10-16 23:20:18.704][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-10-16 23:20:18.705][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:20:18.707][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-10-16 23:20:18.709][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-10-16 23:20:18.712][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-10-16 23:20:18.714][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-10-16 23:20:18.725][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-10-16 23:20:18.728][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-10-16 23:20:18.730][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-10-16 23:20:18.732][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-10-16 23:20:18.857][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-10-16 23:20:18.859][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-10-16 23:20:18.862][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:20:18.864][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:20:18.866][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-10-16 23:20:18.868][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-10-16 23:20:18.872][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:20:18.874][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:20:18.876][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-10-16 23:20:18.878][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-10-16 23:20:18.880][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:20:18.882][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-10-16 23:20:18.884][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-10-16 23:20:18.886][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-10-16 23:20:18.888][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-10-16 23:20:18.980][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-10-16 23:20:18.982][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-10-16 23:20:18.984][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-10-16 23:20:18.987][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-10-16 23:20:18.990][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-10-16 23:20:18.992][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-10-16 23:20:19.038][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:20:19.040][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:20:19.042][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-10-16 23:20:19.045][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-10-16 23:20:19.050][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:20:19.053][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:20:19.055][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-10-16 23:20:19.059][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-10-16 23:20:19.061][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:20:19.063][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-10-16 23:20:19.066][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-10-16 23:20:19.068][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-10-16 23:20:19.070][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-10-16 23:20:19.373][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-10-16 23:20:19.376][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-10-16 23:20:19.378][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-10-16 23:20:19.380][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-10-16 23:20:19.382][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-10-16 23:20:19.384][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-10-16 23:20:19.386][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:20:19.388][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:20:19.390][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-10-16 23:20:19.392][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-10-16 23:20:19.394][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:20:19.396][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:20:19.398][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-10-16 23:20:19.400][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-10-16 23:20:19.402][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:20:19.404][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-10-16 23:20:19.406][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-10-16 23:20:19.408][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-10-16 23:20:19.410][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-10-16 23:20:19.421][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-10-16 23:20:19.424][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-10-16 23:20:19.426][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-10-16 23:20:19.427][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-10-16 23:20:19.430][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-10-16 23:20:19.432][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-10-16 23:20:19.434][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:20:19.436][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:20:19.438][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-10-16 23:20:19.441][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-10-16 23:20:19.443][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:20:19.445][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:20:19.447][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-10-16 23:20:19.449][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-10-16 23:20:19.451][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:20:19.453][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-10-16 23:20:19.455][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-10-16 23:20:19.456][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-10-16 23:20:19.458][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-10-16 23:20:19.470][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-10-16 23:20:19.472][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-10-16 23:20:19.474][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-10-16 23:20:19.476][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-10-16 23:20:19.479][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-10-16 23:20:19.481][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-10-16 23:20:19.483][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:20:19.485][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:20:19.487][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-10-16 23:20:19.489][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-10-16 23:20:19.491][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:20:19.493][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:20:19.495][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-10-16 23:20:19.497][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-10-16 23:20:19.499][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:20:19.501][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-10-16 23:20:19.503][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-10-16 23:20:19.505][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-10-16 23:20:19.507][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-10-16 23:20:19.518][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-10-16 23:20:19.521][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-10-16 23:20:19.523][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-10-16 23:20:19.525][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-10-16 23:20:19.527][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-10-16 23:20:19.529][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-10-16 23:20:19.531][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:20:19.533][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:20:19.535][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-10-16 23:20:19.537][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-10-16 23:20:19.539][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:20:19.541][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:20:19.543][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-10-16 23:20:19.546][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-10-16 23:20:19.547][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:20:19.549][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-10-16 23:20:19.551][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-10-16 23:20:19.553][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-10-16 23:20:19.555][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-10-16 23:20:19.732][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-10-16 23:20:19.734][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-10-16 23:20:19.737][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-10-16 23:20:19.756][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-10-16 23:20:19.762][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-10-16 23:20:19.771][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-10-16 23:20:19.774][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:20:19.779][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:20:19.782][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-10-16 23:20:19.784][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-10-16 23:20:19.786][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:20:19.788][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:20:19.790][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-10-16 23:20:19.793][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-10-16 23:20:19.798][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:20:19.800][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-10-16 23:20:19.802][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-10-16 23:20:19.804][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-10-16 23:20:19.806][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-10-16 23:20:19.817][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-10-16 23:20:19.820][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-10-16 23:20:19.822][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-10-16 23:20:19.824][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-10-16 23:20:19.826][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-10-16 23:20:19.828][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-10-16 23:20:19.830][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:20:19.832][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:20:19.834][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-10-16 23:20:19.836][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-10-16 23:20:19.838][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:20:19.840][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:20:19.842][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-10-16 23:20:19.844][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-10-16 23:20:19.846][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:20:19.848][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-10-16 23:20:19.895][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=squalene&searchCategory=ALL NAMES&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2024-10-16 23:20:19.902][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-10-16 23:20:19.906][cch$loadFileContent] Trying to load 1 files from cache: [1]: "b9623d99e42a57d0f12e83910c2ffbf2".
biodb.TRACE[2024-10-16 23:20:19.909][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-10-16 23:20:19.914][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/b9623d99e42a57d0f12e83910c2ffbf2.content".
biodb.DEBUG[2024-10-16 23:20:19.922][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-10-16 23:20:19.924][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-10-16 23:20:19.926][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-10-16 23:20:19.938][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-10-16 23:20:19.940][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-10-16 23:20:19.942][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-10-16 23:20:19.944][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-10-16 23:20:19.946][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-10-16 23:20:19.949][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-10-16 23:20:19.951][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:20:19.953][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:20:19.955][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-10-16 23:20:19.957][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-10-16 23:20:19.959][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:20:19.961][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:20:19.964][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-10-16 23:20:19.966][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-10-16 23:20:19.968][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:20:19.970][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-10-16 23:20:19.972][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-10-16 23:20:19.974][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-10-16 23:20:19.975][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-10-16 23:20:19.989][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-10-16 23:20:19.991][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-10-16 23:20:19.993][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-10-16 23:20:19.995][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-10-16 23:20:19.997][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-10-16 23:20:20.000][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-10-16 23:20:20.002][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:20:20.003][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:20:20.005][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-10-16 23:20:20.008][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-10-16 23:20:20.009][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:20:20.011][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:20:20.013][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-10-16 23:20:20.016][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-10-16 23:20:20.017][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:20:20.019][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:20:20.021][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-10-16 23:20:20.023][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-10-16 23:20:20.025][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:20:20.027][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:20:20.029][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-10-16 23:20:20.031][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-10-16 23:20:20.033][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:20:20.035][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-10-16 23:20:20.037][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-10-16 23:20:20.039][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-10-16 23:20:20.040][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-10-16 23:20:20.051][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-10-16 23:20:20.053][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-10-16 23:20:20.055][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-10-16 23:20:20.057][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-10-16 23:20:20.060][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-10-16 23:20:20.062][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-10-16 23:20:20.064][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:20:20.066][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:20:20.068][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-10-16 23:20:20.071][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-10-16 23:20:20.073][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:20:20.075][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:20:20.078][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-10-16 23:20:20.080][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-10-16 23:20:20.083][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:20:20.085][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:20:20.087][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-10-16 23:20:20.089][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-10-16 23:20:20.091][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:20:20.093][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:20:20.095][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-10-16 23:20:20.097][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-10-16 23:20:20.099][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:20:20.100][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-10-16 23:20:20.103][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-10-16 23:20:20.104][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-10-16 23:20:20.106][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-10-16 23:20:20.130][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-10-16 23:20:20.133][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-10-16 23:20:20.135][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-10-16 23:20:20.137][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-10-16 23:20:20.211][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-10-16 23:20:20.214][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-10-16 23:20:20.216][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:20:20.219][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:20:20.221][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-10-16 23:20:20.224][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-10-16 23:20:20.226][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:20:20.228][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:20:20.230][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-10-16 23:20:20.232][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-10-16 23:20:20.234][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:20:20.236][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:20:20.239][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-10-16 23:20:20.241][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-10-16 23:20:20.243][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:20:20.245][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:20:20.247][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-10-16 23:20:20.250][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-10-16 23:20:20.252][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:20:20.254][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-10-16 23:20:20.256][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-10-16 23:20:20.258][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-10-16 23:20:20.260][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-10-16 23:20:21.125][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-10-16 23:20:21.128][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-10-16 23:20:21.130][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-10-16 23:20:21.132][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-10-16 23:20:21.135][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-10-16 23:20:21.137][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-10-16 23:20:21.139][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:20:21.141][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:20:21.143][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-10-16 23:20:21.146][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-10-16 23:20:21.148][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:20:21.150][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:20:21.152][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-10-16 23:20:21.154][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-10-16 23:20:21.156][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:20:21.158][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-10-16 23:20:21.160][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-10-16 23:20:21.162][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-10-16 23:20:21.164][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-10-16 23:20:21.191][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-10-16 23:20:21.193][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-10-16 23:20:21.195][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-10-16 23:20:21.197][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-10-16 23:20:21.200][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-10-16 23:20:21.202][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-10-16 23:20:21.204][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:20:21.206][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:20:21.208][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-10-16 23:20:21.211][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-10-16 23:20:21.213][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:20:21.214][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:20:21.216][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-10-16 23:20:21.219][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-10-16 23:20:21.220][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:20:21.222][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-10-16 23:20:21.224][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-10-16 23:20:21.226][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-10-16 23:20:21.228][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-10-16 23:20:21.245][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-10-16 23:20:21.247][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-10-16 23:20:21.249][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-10-16 23:20:21.351][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-10-16 23:20:21.356][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-10-16 23:20:21.359][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-10-16 23:20:21.362][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:20:21.364][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:20:21.367][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-10-16 23:20:21.369][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-10-16 23:20:21.371][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:20:21.374][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:20:21.376][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-10-16 23:20:21.378][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-10-16 23:20:21.380][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:20:21.382][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-10-16 23:20:21.384][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-10-16 23:20:21.386][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-10-16 23:20:21.388][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-10-16 23:20:21.399][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-10-16 23:20:21.402][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-10-16 23:20:21.404][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-10-16 23:20:21.406][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-10-16 23:20:21.408][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-10-16 23:20:21.411][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-10-16 23:20:21.413][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:20:21.415][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:20:21.417][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-10-16 23:20:21.419][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-10-16 23:20:21.421][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:20:21.423][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:20:21.426][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-10-16 23:20:21.428][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-10-16 23:20:21.430][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:20:21.432][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-10-16 23:20:21.434][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-10-16 23:20:21.436][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-10-16 23:20:21.437][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-10-16 23:20:21.450][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-10-16 23:20:21.452][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-10-16 23:20:21.454][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-10-16 23:20:21.456][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-10-16 23:20:21.458][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-10-16 23:20:21.460][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-10-16 23:20:21.463][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:20:21.465][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:20:21.467][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-10-16 23:20:21.469][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-10-16 23:20:21.471][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:20:21.473][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:20:21.475][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-10-16 23:20:21.477][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-10-16 23:20:21.479][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:20:21.481][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-10-16 23:20:21.483][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-10-16 23:20:21.485][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-10-16 23:20:21.486][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-10-16 23:20:21.506][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-10-16 23:20:21.508][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-10-16 23:20:21.511][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-10-16 23:20:21.513][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-10-16 23:20:21.515][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-10-16 23:20:21.517][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-10-16 23:20:21.520][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:20:21.521][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:20:21.576][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-10-16 23:20:21.579][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-10-16 23:20:21.581][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:20:21.583][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:20:21.586][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-10-16 23:20:21.588][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-10-16 23:20:21.590][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:20:21.592][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-10-16 23:20:21.594][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-10-16 23:20:21.596][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-10-16 23:20:21.598][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-10-16 23:20:21.610][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-10-16 23:20:21.612][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-10-16 23:20:21.614][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-10-16 23:20:21.616][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-10-16 23:20:21.618][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-10-16 23:20:21.621][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-10-16 23:20:21.623][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:20:21.625][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:20:21.627][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-10-16 23:20:21.629][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-10-16 23:20:21.631][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:20:21.633][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:20:21.635][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-10-16 23:20:21.637][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-10-16 23:20:21.639][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:20:21.641][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-10-16 23:20:21.643][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-10-16 23:20:21.645][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-10-16 23:20:21.647][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-10-16 23:20:21.658][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-10-16 23:20:21.660][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-10-16 23:20:21.662][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-10-16 23:20:21.664][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-10-16 23:20:21.666][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-10-16 23:20:21.669][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-10-16 23:20:21.671][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:20:21.673][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:20:21.675][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-10-16 23:20:21.689][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-10-16 23:20:21.691][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:20:21.695][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:20:21.697][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-10-16 23:20:21.700][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-10-16 23:20:21.702][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:20:21.704][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-10-16 23:20:21.706][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-10-16 23:20:21.708][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-10-16 23:20:21.710][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-10-16 23:20:21.722][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-10-16 23:20:21.724][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-10-16 23:20:21.726][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-10-16 23:20:21.728][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-10-16 23:20:21.731][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-10-16 23:20:21.733][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-10-16 23:20:21.735][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:20:21.737][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:20:21.739][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-10-16 23:20:21.742][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-10-16 23:20:21.744][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:20:21.747][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:20:21.749][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-10-16 23:20:21.755][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-10-16 23:20:21.758][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:20:21.761][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-10-16 23:20:21.764][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-10-16 23:20:21.766][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-10-16 23:20:21.769][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-10-16 23:20:21.787][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-10-16 23:20:21.789][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-10-16 23:20:21.792][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-10-16 23:20:21.794][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-10-16 23:20:21.797][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-10-16 23:20:21.800][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-10-16 23:20:21.802][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:20:21.807][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:20:21.810][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-10-16 23:20:21.813][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-10-16 23:20:21.815][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:20:21.817][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:20:21.819][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-10-16 23:20:21.821][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-10-16 23:20:21.823][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:20:21.825][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-10-16 23:20:21.827][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-10-16 23:20:21.829][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-10-16 23:20:21.830][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-10-16 23:20:21.842][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-10-16 23:20:21.844][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-10-16 23:20:21.918][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-10-16 23:20:21.920][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-10-16 23:20:21.922][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-10-16 23:20:21.925][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-10-16 23:20:21.933][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:20:21.937][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:20:21.939][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-10-16 23:20:21.942][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-10-16 23:20:21.944][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:20:21.946][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:20:21.948][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-10-16 23:20:21.951][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-10-16 23:20:21.953][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:20:21.955][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-10-16 23:20:21.959][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-10-16 23:20:21.960][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-10-16 23:20:21.962][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-10-16 23:20:21.975][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-10-16 23:20:21.977][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-10-16 23:20:21.979][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-10-16 23:20:21.981][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-10-16 23:20:21.983][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-10-16 23:20:21.985][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-10-16 23:20:21.987][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:20:21.989][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:20:21.991][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-10-16 23:20:21.993][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-10-16 23:20:21.995][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:20:21.997][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:20:21.999][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-10-16 23:20:22.001][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-10-16 23:20:22.003][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:20:22.005][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-10-16 23:20:22.007][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-10-16 23:20:22.009][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-10-16 23:20:22.011][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-10-16 23:20:22.023][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-10-16 23:20:22.025][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-10-16 23:20:22.027][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-10-16 23:20:22.029][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-10-16 23:20:22.032][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-10-16 23:20:22.119][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-10-16 23:20:22.121][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:20:22.123][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:20:22.126][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-10-16 23:20:22.128][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-10-16 23:20:22.130][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:20:22.133][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:20:22.135][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-10-16 23:20:22.137][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-10-16 23:20:22.140][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:20:22.142][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-10-16 23:20:22.144][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-10-16 23:20:22.146][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-10-16 23:20:22.148][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-10-16 23:20:22.160][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-10-16 23:20:22.162][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-10-16 23:20:22.164][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-10-16 23:20:22.166][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-10-16 23:20:22.169][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-10-16 23:20:22.171][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-10-16 23:20:22.173][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:20:22.175][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:20:22.177][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-10-16 23:20:22.179][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-10-16 23:20:22.181][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:20:22.183][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:20:22.185][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-10-16 23:20:22.187][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-10-16 23:20:22.189][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:20:22.191][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-10-16 23:20:22.193][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-10-16 23:20:22.195][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-10-16 23:20:22.196][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-10-16 23:20:22.207][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-10-16 23:20:22.210][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-10-16 23:20:22.211][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-10-16 23:20:22.213][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-10-16 23:20:22.216][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-10-16 23:20:22.218][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-10-16 23:20:22.228][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:20:22.230][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:20:22.232][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-10-16 23:20:22.234][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-10-16 23:20:22.236][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:20:22.238][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:20:22.240][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-10-16 23:20:22.242][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-10-16 23:20:22.244][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:20:22.246][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-10-16 23:20:22.248][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-10-16 23:20:22.250][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-10-16 23:20:22.252][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-10-16 23:20:22.360][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-10-16 23:20:22.363][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-10-16 23:20:22.365][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-10-16 23:20:22.367][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-10-16 23:20:22.369][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-10-16 23:20:22.372][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-10-16 23:20:22.374][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:20:22.376][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:20:22.378][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-10-16 23:20:22.380][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-10-16 23:20:22.382][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:20:22.384][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:20:22.386][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-10-16 23:20:22.388][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-10-16 23:20:22.390][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:20:22.392][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:20:22.705][self$getBiodb()$getEntryFields()$get] Asked field names are: nominal.mass.
biodb.TRACE[2024-10-16 23:20:22.707][self$getBiodb()$getEntryFields()$get] Realnames of fields are: nominal.mass.
biodb.TRACE[2024-10-16 23:20:22.709][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:20:22.711][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.INFO [2024-10-16 23:20:22.824][biodb::testThat]
biodb.INFO [2024-10-16 23:20:22.826][biodb::testThat] Running test function  test_annotateMzValues_input_vector  (" annotateMzValues() accepts a single vector. ").
biodb.INFO [2024-10-16 23:20:22.829][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-10-16 23:20:22.875][biodb::testThat]
biodb.TRACE[2024-10-16 23:20:22.882][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2024-10-16 23:20:22.884][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2024-10-16 23:20:22.887][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:20:22.889][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:20:22.891][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-10-16 23:20:22.893][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-10-16 23:20:22.895][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:20:22.897][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:20:22.899][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-10-16 23:20:22.901][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-10-16 23:20:22.903][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:20:22.938][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:20:22.941][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-10-16 23:20:22.943][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-10-16 23:20:22.945][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:20:22.947][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:20:22.949][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-10-16 23:20:22.951][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-10-16 23:20:22.953][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:20:22.955][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-10-16 23:20:22.962][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-10-16 23:20:22.978][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-10-16 23:20:22.981][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-10-16 23:20:22.993][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-10-16 23:20:22.995][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-10-16 23:20:22.997][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-10-16 23:20:22.998][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-10-16 23:20:23.004][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.72*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2024-10-16 23:20:23.010][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-10-16 23:20:23.013][cch$loadFileContent] Trying to load 1 files from cache: [1]: "dabc9e8530050c4ceebbaec76743bcf1".
biodb.TRACE[2024-10-16 23:20:23.015][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-10-16 23:20:23.019][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/dabc9e8530050c4ceebbaec76743bcf1.content".
biodb.DEBUG[2024-10-16 23:20:23.023][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-10-16 23:20:23.025][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-10-16 23:20:23.027][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-10-16 23:20:23.038][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-10-16 23:20:23.041][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-10-16 23:20:23.043][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-10-16 23:20:23.045][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-10-16 23:20:23.047][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-10-16 23:20:23.050][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-10-16 23:20:23.052][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:20:23.054][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:20:23.056][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-10-16 23:20:23.059][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-10-16 23:20:23.061][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:20:23.063][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:20:23.065][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-10-16 23:20:23.067][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-10-16 23:20:23.069][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:20:23.072][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-10-16 23:20:23.076][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.73*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2024-10-16 23:20:23.082][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-10-16 23:20:23.085][cch$loadFileContent] Trying to load 1 files from cache: [1]: "41b7f9723242a79cfe14bebd91dbb5b6".
biodb.TRACE[2024-10-16 23:20:23.088][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-10-16 23:20:23.092][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/41b7f9723242a79cfe14bebd91dbb5b6.content".
biodb.DEBUG[2024-10-16 23:20:23.097][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-10-16 23:20:23.099][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-10-16 23:20:23.101][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-10-16 23:20:23.113][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-10-16 23:20:23.115][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-10-16 23:20:23.117][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-10-16 23:20:23.119][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-10-16 23:20:23.122][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-10-16 23:20:23.124][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-10-16 23:20:23.126][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:20:23.128][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:20:23.130][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-10-16 23:20:23.133][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-10-16 23:20:23.135][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:20:23.137][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:20:23.139][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-10-16 23:20:23.141][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-10-16 23:20:23.143][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:20:23.145][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-10-16 23:20:23.147][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-10-16 23:20:23.149][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-10-16 23:20:23.150][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-10-16 23:20:23.162][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-10-16 23:20:23.164][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-10-16 23:20:23.166][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-10-16 23:20:23.168][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-10-16 23:20:23.171][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-10-16 23:20:23.173][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-10-16 23:20:23.175][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:20:23.177][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:20:23.180][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-10-16 23:20:23.182][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-10-16 23:20:23.185][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:20:23.187][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:20:23.189][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-10-16 23:20:23.191][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-10-16 23:20:23.193][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:20:23.194][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-10-16 23:20:23.197][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2024-10-16 23:20:23.200][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-10-16 23:20:23.201][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-10-16 23:20:23.203][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-10-16 23:20:23.214][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-10-16 23:20:23.216][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-10-16 23:20:23.218][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-10-16 23:20:23.220][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-10-16 23:20:23.223][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-10-16 23:20:23.226][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-10-16 23:20:23.228][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:20:23.230][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:20:23.232][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-10-16 23:20:23.234][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-10-16 23:20:23.236][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:20:23.237][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:20:23.240][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-10-16 23:20:23.241][private$selectFields]
biodb.TRACE[2024-10-16 23:20:23.243][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-10-16 23:20:23.245][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-10-16 23:20:23.247][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-10-16 23:20:23.249][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-10-16 23:20:23.251][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-10-16 23:20:23.253][ef$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:20:23.255][ef$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:20:23.257][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-10-16 23:20:23.259][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-10-16 23:20:23.261][ef$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:20:23.263][ef$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:20:23.265][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-10-16 23:20:23.267][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-10-16 23:20:23.268][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-10-16 23:20:23.271][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-10-16 23:20:23.272][ef$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:20:23.274][ef$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:20:23.276][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-10-16 23:20:23.278][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-10-16 23:20:23.280][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-10-16 23:20:23.282][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:20:23.284][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:20:23.286][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-10-16 23:20:23.288][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-10-16 23:20:23.290][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:20:23.292][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:20:23.294][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-10-16 23:20:23.296][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-10-16 23:20:23.298][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:20:23.300][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:20:23.316][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [192288].
biodb.DEBUG[2024-10-16 23:20:23.319][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-10-16 23:20:23.321][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-10-16 23:20:23.323][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-10-16 23:20:23.334][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-10-16 23:20:23.335][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-10-16 23:20:23.336][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-10-16 23:20:23.338][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-10-16 23:20:23.339][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-10-16 23:20:23.340][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-10-16 23:20:23.342][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:20:23.343][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:20:23.344][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-10-16 23:20:23.345][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-10-16 23:20:23.346][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:20:23.348][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:20:23.349][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-10-16 23:20:23.350][private$selectFields]
biodb.TRACE[2024-10-16 23:20:23.351][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-10-16 23:20:23.352][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-10-16 23:20:23.353][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-10-16 23:20:23.355][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-10-16 23:20:23.356][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-10-16 23:20:23.357][ef$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:20:23.358][ef$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:20:23.359][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-10-16 23:20:23.361][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-10-16 23:20:23.362][ef$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:20:23.363][ef$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:20:23.364][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-10-16 23:20:23.366][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-10-16 23:20:23.367][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-10-16 23:20:23.368][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-10-16 23:20:23.369][ef$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:20:23.370][ef$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:20:23.371][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-10-16 23:20:23.373][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-10-16 23:20:23.374][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-10-16 23:20:23.376][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:20:23.377][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:20:23.378][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-10-16 23:20:23.379][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-10-16 23:20:23.380][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:20:23.382][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:20:23.383][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-10-16 23:20:23.384][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-10-16 23:20:23.385][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:20:23.386][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:20:23.388][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [15440].
biodb.DEBUG[2024-10-16 23:20:23.389][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-10-16 23:20:23.390][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-10-16 23:20:23.391][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-10-16 23:20:23.399][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-10-16 23:20:23.400][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-10-16 23:20:23.401][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-10-16 23:20:23.402][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-10-16 23:20:23.404][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-10-16 23:20:23.407][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-10-16 23:20:23.408][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:20:23.410][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:20:23.411][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-10-16 23:20:23.412][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-10-16 23:20:23.413][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:20:23.414][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:20:23.416][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-10-16 23:20:23.417][private$selectFields]
biodb.TRACE[2024-10-16 23:20:23.418][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-10-16 23:20:23.419][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-10-16 23:20:23.420][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-10-16 23:20:23.422][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-10-16 23:20:23.423][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-10-16 23:20:23.424][ef$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:20:23.425][ef$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:20:23.426][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-10-16 23:20:23.428][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-10-16 23:20:23.429][ef$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:20:23.431][ef$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:20:23.432][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-10-16 23:20:23.433][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-10-16 23:20:23.434][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-10-16 23:20:23.435][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-10-16 23:20:23.437][ef$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:20:23.438][ef$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:20:23.439][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-10-16 23:20:23.440][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-10-16 23:20:23.442][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-10-16 23:20:23.443][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:20:23.444][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:20:23.445][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-10-16 23:20:23.447][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-10-16 23:20:23.448][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:20:23.449][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:20:23.450][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-10-16 23:20:23.451][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-10-16 23:20:23.453][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:20:23.454][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:20:23.455][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [209892].
biodb.DEBUG[2024-10-16 23:20:23.457][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2024-10-16 23:20:23.464][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.TRACE[2024-10-16 23:20:27.000][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-10-16 23:20:27.002][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-10-16 23:20:27.003][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:20:27.004][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:20:27.005][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-10-16 23:20:27.007][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-10-16 23:20:27.008][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:20:27.010][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:20:27.011][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-10-16 23:20:27.012][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-10-16 23:20:27.013][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:20:27.015][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:20:27.016][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-10-16 23:20:27.017][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-10-16 23:20:27.018][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:20:27.019][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-10-16 23:20:27.065][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-10-16 23:20:27.067][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-10-16 23:20:27.068][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-10-16 23:20:27.077][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-10-16 23:20:27.079][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-10-16 23:20:27.081][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-10-16 23:20:27.083][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-10-16 23:20:27.088][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.38*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2024-10-16 23:20:27.100][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-10-16 23:20:27.134][cch$loadFileContent] Trying to load 1 files from cache: [1]: "49f51d93ac229648aa454636918ce386".
biodb.TRACE[2024-10-16 23:20:27.137][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-10-16 23:20:27.180][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/49f51d93ac229648aa454636918ce386.content".
biodb.DEBUG[2024-10-16 23:20:27.186][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.39*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2024-10-16 23:20:27.192][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-10-16 23:20:27.195][cch$loadFileContent] Trying to load 1 files from cache: [1]: "121ea95906eb67bed88948c362686e4f".
biodb.TRACE[2024-10-16 23:20:27.199][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-10-16 23:20:27.238][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/121ea95906eb67bed88948c362686e4f.content".
biodb.DEBUG[2024-10-16 23:20:27.243][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-10-16 23:20:27.245][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-10-16 23:20:27.247][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-10-16 23:20:27.258][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-10-16 23:20:27.260][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-10-16 23:20:27.262][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-10-16 23:20:27.264][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-10-16 23:20:27.266][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-10-16 23:20:27.268][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-10-16 23:20:27.270][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:20:27.271][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:20:27.273][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-10-16 23:20:27.275][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-10-16 23:20:27.277][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:20:27.279][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:20:27.281][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-10-16 23:20:27.283][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-10-16 23:20:27.285][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:20:27.286][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-10-16 23:20:27.288][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-10-16 23:20:27.290][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-10-16 23:20:27.292][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-10-16 23:20:27.303][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-10-16 23:20:27.305][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-10-16 23:20:27.306][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-10-16 23:20:27.308][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-10-16 23:20:27.310][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-10-16 23:20:27.312][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-10-16 23:20:27.314][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:20:27.316][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:20:27.318][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-10-16 23:20:27.320][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-10-16 23:20:27.322][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:20:27.324][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:20:27.326][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-10-16 23:20:27.328][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-10-16 23:20:27.329][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:20:27.331][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-10-16 23:20:27.333][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-10-16 23:20:27.335][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-10-16 23:20:27.337][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-10-16 23:20:27.345][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-10-16 23:20:27.346][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-10-16 23:20:27.347][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-10-16 23:20:27.348][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-10-16 23:20:27.349][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-10-16 23:20:27.351][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-10-16 23:20:27.352][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:20:27.353][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:20:27.354][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-10-16 23:20:27.356][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-10-16 23:20:27.357][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:20:27.358][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:20:27.359][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-10-16 23:20:27.360][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-10-16 23:20:27.361][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:20:27.363][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-10-16 23:20:27.386][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2024-10-16 23:20:27.423][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-10-16 23:20:27.426][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-10-16 23:20:27.428][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-10-16 23:20:27.439][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-10-16 23:20:27.441][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-10-16 23:20:27.443][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-10-16 23:20:27.444][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-10-16 23:20:27.447][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-10-16 23:20:27.449][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-10-16 23:20:27.451][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:20:27.453][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:20:27.455][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-10-16 23:20:27.457][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-10-16 23:20:27.459][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:20:27.461][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:20:27.463][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-10-16 23:20:27.465][private$selectFields]
biodb.TRACE[2024-10-16 23:20:27.467][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-10-16 23:20:27.469][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-10-16 23:20:27.471][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-10-16 23:20:27.473][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-10-16 23:20:27.475][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-10-16 23:20:27.477][ef$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:20:27.479][ef$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:20:27.481][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-10-16 23:20:27.483][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-10-16 23:20:27.484][ef$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:20:27.486][ef$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:20:27.488][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-10-16 23:20:27.490][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-10-16 23:20:27.492][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-10-16 23:20:27.494][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-10-16 23:20:27.495][ef$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:20:27.497][ef$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:20:27.499][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-10-16 23:20:27.501][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-10-16 23:20:27.503][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-10-16 23:20:27.504][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:20:27.506][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:20:27.508][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-10-16 23:20:27.510][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-10-16 23:20:27.512][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:20:27.514][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:20:27.516][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-10-16 23:20:27.517][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-10-16 23:20:27.519][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:20:27.521][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:20:27.523][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [4648].
biodb.DEBUG[2024-10-16 23:20:27.525][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-10-16 23:20:27.527][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-10-16 23:20:27.529][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-10-16 23:20:27.538][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-10-16 23:20:27.539][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-10-16 23:20:27.540][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-10-16 23:20:27.541][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-10-16 23:20:27.554][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-10-16 23:20:27.555][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-10-16 23:20:27.556][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:20:27.557][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:20:27.559][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-10-16 23:20:27.560][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-10-16 23:20:27.561][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:20:27.562][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:20:27.587][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-10-16 23:20:27.589][private$selectFields]
biodb.TRACE[2024-10-16 23:20:27.590][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-10-16 23:20:27.591][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-10-16 23:20:27.592][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-10-16 23:20:27.593][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-10-16 23:20:27.594][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-10-16 23:20:27.596][ef$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:20:27.597][ef$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:20:27.598][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-10-16 23:20:27.599][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-10-16 23:20:27.600][ef$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:20:27.601][ef$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:20:27.603][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-10-16 23:20:27.612][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-10-16 23:20:27.613][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-10-16 23:20:27.614][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-10-16 23:20:27.615][ef$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:20:27.616][ef$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:20:27.617][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-10-16 23:20:27.619][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-10-16 23:20:27.620][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-10-16 23:20:27.621][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:20:27.622][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:20:27.623][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-10-16 23:20:27.625][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-10-16 23:20:27.626][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:20:27.627][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:20:27.628][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-10-16 23:20:27.629][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-10-16 23:20:27.631][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:20:27.632][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:20:27.633][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [15440].
biodb.DEBUG[2024-10-16 23:20:27.635][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-10-16 23:20:27.636][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-10-16 23:20:27.637][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-10-16 23:20:27.644][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-10-16 23:20:27.645][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-10-16 23:20:27.646][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-10-16 23:20:27.647][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-10-16 23:20:27.649][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-10-16 23:20:27.650][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-10-16 23:20:27.651][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:20:27.652][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:20:27.653][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-10-16 23:20:27.655][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-10-16 23:20:27.656][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:20:27.657][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:20:27.658][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-10-16 23:20:27.659][private$selectFields]
biodb.TRACE[2024-10-16 23:20:27.660][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-10-16 23:20:27.661][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-10-16 23:20:27.662][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-10-16 23:20:27.664][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-10-16 23:20:27.665][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-10-16 23:20:27.666][ef$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:20:27.667][ef$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:20:27.668][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-10-16 23:20:27.670][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-10-16 23:20:27.671][ef$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:20:27.672][ef$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:20:27.673][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-10-16 23:20:27.674][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-10-16 23:20:27.675][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-10-16 23:20:27.677][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-10-16 23:20:27.678][ef$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:20:27.679][ef$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:20:27.680][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-10-16 23:20:27.681][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-10-16 23:20:27.683][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-10-16 23:20:27.684][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:20:27.685][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:20:27.686][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-10-16 23:20:27.688][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-10-16 23:20:27.689][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:20:27.690][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:20:27.691][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-10-16 23:20:27.692][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-10-16 23:20:27.694][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:20:27.695][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:20:27.696][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [62447].
biodb.DEBUG[2024-10-16 23:20:27.697][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2024-10-16 23:20:27.699][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.TRACE[2024-10-16 23:20:27.710][self$getBiodb()$getEntryFields()$get] Asked field names are: nominal.mass.
biodb.TRACE[2024-10-16 23:20:27.711][self$getBiodb()$getEntryFields()$get] Realnames of fields are: nominal.mass.
biodb.TRACE[2024-10-16 23:20:27.712][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:20:27.713][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.INFO [2024-10-16 23:20:27.720][biodb::testThat]
biodb.INFO [2024-10-16 23:20:27.722][biodb::testThat] Running test function  test_annotateMzValues_ppm_tol  (" ppm tolerance works in annotateMzValues() ").
biodb.INFO [2024-10-16 23:20:27.723][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-10-16 23:20:27.724][biodb::testThat]
biodb.TRACE[2024-10-16 23:20:27.728][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2024-10-16 23:20:27.729][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2024-10-16 23:20:27.731][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:20:27.732][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:20:27.733][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-10-16 23:20:27.734][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-10-16 23:20:27.735][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:20:27.737][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:20:27.738][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-10-16 23:20:27.739][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-10-16 23:20:27.740][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:20:27.742][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:20:27.743][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-10-16 23:20:27.744][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-10-16 23:20:27.745][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:20:27.746][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:20:27.748][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-10-16 23:20:27.749][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-10-16 23:20:27.750][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:20:27.751][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-10-16 23:20:27.755][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-10-16 23:20:27.756][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-10-16 23:20:27.757][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-10-16 23:20:27.764][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-10-16 23:20:27.766][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-10-16 23:20:27.767][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-10-16 23:20:27.768][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-10-16 23:20:27.771][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.72*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2024-10-16 23:20:27.775][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-10-16 23:20:27.776][cch$loadFileContent] Trying to load 1 files from cache: [1]: "dabc9e8530050c4ceebbaec76743bcf1".
biodb.TRACE[2024-10-16 23:20:27.778][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-10-16 23:20:27.780][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/dabc9e8530050c4ceebbaec76743bcf1.content".
biodb.DEBUG[2024-10-16 23:20:27.782][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-10-16 23:20:27.783][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-10-16 23:20:27.784][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-10-16 23:20:27.792][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-10-16 23:20:27.793][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-10-16 23:20:27.794][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-10-16 23:20:27.795][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-10-16 23:20:27.796][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-10-16 23:20:27.798][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-10-16 23:20:27.799][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:20:27.800][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:20:27.801][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-10-16 23:20:27.802][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-10-16 23:20:27.804][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:20:27.805][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:20:27.806][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-10-16 23:20:27.807][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-10-16 23:20:27.808][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:20:27.809][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-10-16 23:20:27.812][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.73*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2024-10-16 23:20:27.815][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-10-16 23:20:27.817][cch$loadFileContent] Trying to load 1 files from cache: [1]: "41b7f9723242a79cfe14bebd91dbb5b6".
biodb.TRACE[2024-10-16 23:20:27.818][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-10-16 23:20:27.821][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/41b7f9723242a79cfe14bebd91dbb5b6.content".
biodb.DEBUG[2024-10-16 23:20:27.823][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-10-16 23:20:27.825][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-10-16 23:20:27.826][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-10-16 23:20:27.833][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-10-16 23:20:27.834][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-10-16 23:20:27.835][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-10-16 23:20:27.836][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-10-16 23:20:27.838][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-10-16 23:20:27.839][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-10-16 23:20:27.840][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:20:27.841][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:20:27.842][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-10-16 23:20:27.844][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-10-16 23:20:27.845][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:20:27.846][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:20:27.847][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-10-16 23:20:27.849][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-10-16 23:20:27.850][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:20:27.851][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-10-16 23:20:27.852][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-10-16 23:20:27.853][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-10-16 23:20:27.854][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-10-16 23:20:27.861][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-10-16 23:20:27.863][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-10-16 23:20:27.864][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-10-16 23:20:27.865][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-10-16 23:20:27.866][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-10-16 23:20:27.868][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-10-16 23:20:27.869][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:20:27.870][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:20:27.871][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-10-16 23:20:27.872][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-10-16 23:20:27.874][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:20:27.875][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:20:27.876][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-10-16 23:20:27.877][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-10-16 23:20:27.878][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:20:27.880][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-10-16 23:20:27.881][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2024-10-16 23:20:27.883][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-10-16 23:20:27.884][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-10-16 23:20:27.885][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-10-16 23:20:27.892][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-10-16 23:20:27.893][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-10-16 23:20:27.894][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-10-16 23:20:27.895][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-10-16 23:20:27.897][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-10-16 23:20:27.898][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-10-16 23:20:27.899][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:20:27.900][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:20:27.902][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-10-16 23:20:27.903][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-10-16 23:20:27.904][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:20:27.905][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:20:27.906][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-10-16 23:20:27.908][private$selectFields]
biodb.TRACE[2024-10-16 23:20:27.909][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-10-16 23:20:27.910][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-10-16 23:20:27.911][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-10-16 23:20:27.912][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-10-16 23:20:27.914][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-10-16 23:20:27.915][ef$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:20:27.916][ef$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:20:27.917][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-10-16 23:20:27.918][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-10-16 23:20:27.919][ef$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:20:27.921][ef$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:20:27.922][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-10-16 23:20:27.923][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-10-16 23:20:27.924][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-10-16 23:20:27.925][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-10-16 23:20:27.927][ef$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:20:27.928][ef$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:20:27.929][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-10-16 23:20:27.930][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-10-16 23:20:27.932][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-10-16 23:20:27.933][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:20:27.934][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:20:27.935][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-10-16 23:20:27.936][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-10-16 23:20:27.938][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:20:27.939][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:20:27.940][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-10-16 23:20:27.941][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-10-16 23:20:27.942][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:20:27.943][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:20:27.945][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [192288].
biodb.DEBUG[2024-10-16 23:20:27.946][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-10-16 23:20:27.947][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-10-16 23:20:27.949][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-10-16 23:20:27.956][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-10-16 23:20:27.957][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-10-16 23:20:27.958][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-10-16 23:20:27.959][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-10-16 23:20:27.960][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-10-16 23:20:27.962][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-10-16 23:20:27.963][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:20:27.964][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:20:27.965][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-10-16 23:20:27.966][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-10-16 23:20:27.968][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:20:27.969][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:20:27.970][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-10-16 23:20:27.971][private$selectFields]
biodb.TRACE[2024-10-16 23:20:27.972][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-10-16 23:20:27.973][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-10-16 23:20:27.975][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-10-16 23:20:27.976][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-10-16 23:20:27.977][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-10-16 23:20:27.978][ef$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:20:27.979][ef$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:20:27.981][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-10-16 23:20:27.982][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-10-16 23:20:27.983][ef$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:20:27.984][ef$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:20:27.985][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-10-16 23:20:27.987][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-10-16 23:20:27.988][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-10-16 23:20:27.989][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-10-16 23:20:27.990][ef$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:20:27.991][ef$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:20:27.992][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-10-16 23:20:27.999][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-10-16 23:20:28.000][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-10-16 23:20:28.002][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:20:28.003][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:20:28.004][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-10-16 23:20:28.005][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-10-16 23:20:28.006][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:20:28.007][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:20:28.009][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-10-16 23:20:28.010][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-10-16 23:20:28.011][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:20:28.012][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:20:28.014][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [15440].
biodb.DEBUG[2024-10-16 23:20:28.015][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-10-16 23:20:28.016][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-10-16 23:20:28.017][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-10-16 23:20:28.024][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-10-16 23:20:28.025][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-10-16 23:20:28.026][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-10-16 23:20:28.027][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-10-16 23:20:28.029][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-10-16 23:20:28.030][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-10-16 23:20:28.031][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:20:28.032][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:20:28.034][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-10-16 23:20:28.035][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-10-16 23:20:28.036][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:20:28.037][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:20:28.038][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-10-16 23:20:28.039][private$selectFields]
biodb.TRACE[2024-10-16 23:20:28.041][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-10-16 23:20:28.042][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-10-16 23:20:28.043][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-10-16 23:20:28.044][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-10-16 23:20:28.045][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-10-16 23:20:28.046][ef$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:20:28.047][ef$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:20:28.049][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-10-16 23:20:28.050][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-10-16 23:20:28.051][ef$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:20:28.052][ef$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:20:28.053][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-10-16 23:20:28.054][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-10-16 23:20:28.056][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-10-16 23:20:28.057][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-10-16 23:20:28.058][ef$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:20:28.059][ef$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:20:28.060][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-10-16 23:20:28.061][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-10-16 23:20:28.063][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-10-16 23:20:28.064][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:20:28.065][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:20:28.066][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-10-16 23:20:28.067][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-10-16 23:20:28.068][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:20:28.070][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:20:28.071][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-10-16 23:20:28.072][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-10-16 23:20:28.073][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:20:28.074][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:20:28.076][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [209892].
biodb.DEBUG[2024-10-16 23:20:28.077][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2024-10-16 23:20:28.078][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.TRACE[2024-10-16 23:20:28.126][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-10-16 23:20:28.127][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-10-16 23:20:28.129][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:20:28.130][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:20:28.131][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-10-16 23:20:28.132][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-10-16 23:20:28.134][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:20:28.135][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:20:28.136][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-10-16 23:20:28.137][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-10-16 23:20:28.138][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:20:28.139][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:20:28.141][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-10-16 23:20:28.142][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-10-16 23:20:28.143][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:20:28.144][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-10-16 23:20:28.148][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-10-16 23:20:28.149][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-10-16 23:20:28.150][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-10-16 23:20:28.157][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-10-16 23:20:28.158][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-10-16 23:20:28.160][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-10-16 23:20:28.161][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-10-16 23:20:28.164][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.38*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2024-10-16 23:20:28.167][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-10-16 23:20:28.169][cch$loadFileContent] Trying to load 1 files from cache: [1]: "49f51d93ac229648aa454636918ce386".
biodb.TRACE[2024-10-16 23:20:28.170][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-10-16 23:20:28.172][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/49f51d93ac229648aa454636918ce386.content".
biodb.DEBUG[2024-10-16 23:20:28.176][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.39*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2024-10-16 23:20:28.180][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-10-16 23:20:28.181][cch$loadFileContent] Trying to load 1 files from cache: [1]: "121ea95906eb67bed88948c362686e4f".
biodb.TRACE[2024-10-16 23:20:28.183][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-10-16 23:20:28.185][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/121ea95906eb67bed88948c362686e4f.content".
biodb.DEBUG[2024-10-16 23:20:28.188][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-10-16 23:20:28.189][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-10-16 23:20:28.190][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-10-16 23:20:28.197][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-10-16 23:20:28.198][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-10-16 23:20:28.199][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-10-16 23:20:28.200][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-10-16 23:20:28.201][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-10-16 23:20:28.203][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-10-16 23:20:28.204][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:20:28.205][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:20:28.206][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-10-16 23:20:28.208][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-10-16 23:20:28.209][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:20:28.210][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:20:28.211][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-10-16 23:20:28.212][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-10-16 23:20:28.213][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:20:28.215][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-10-16 23:20:28.216][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-10-16 23:20:28.217][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-10-16 23:20:28.218][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-10-16 23:20:28.225][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-10-16 23:20:28.226][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-10-16 23:20:28.227][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-10-16 23:20:28.228][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-10-16 23:20:28.230][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-10-16 23:20:28.231][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-10-16 23:20:28.232][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:20:28.233][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:20:28.235][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-10-16 23:20:28.236][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-10-16 23:20:28.237][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:20:28.238][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:20:28.239][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-10-16 23:20:28.241][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-10-16 23:20:28.242][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:20:28.243][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-10-16 23:20:28.244][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-10-16 23:20:28.245][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-10-16 23:20:28.246][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-10-16 23:20:28.254][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-10-16 23:20:28.255][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-10-16 23:20:28.256][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-10-16 23:20:28.257][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-10-16 23:20:28.258][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-10-16 23:20:28.260][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-10-16 23:20:28.261][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:20:28.262][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:20:28.263][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-10-16 23:20:28.265][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-10-16 23:20:28.266][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:20:28.267][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:20:28.268][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-10-16 23:20:28.269][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-10-16 23:20:28.270][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:20:28.272][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-10-16 23:20:28.273][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2024-10-16 23:20:28.275][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-10-16 23:20:28.276][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-10-16 23:20:28.277][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-10-16 23:20:28.284][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-10-16 23:20:28.285][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-10-16 23:20:28.286][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-10-16 23:20:28.287][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-10-16 23:20:28.289][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-10-16 23:20:28.290][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-10-16 23:20:28.291][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:20:28.292][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:20:28.294][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-10-16 23:20:28.295][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-10-16 23:20:28.296][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:20:28.297][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:20:28.298][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-10-16 23:20:28.299][private$selectFields]
biodb.TRACE[2024-10-16 23:20:28.300][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-10-16 23:20:28.302][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-10-16 23:20:28.303][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-10-16 23:20:28.304][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-10-16 23:20:28.305][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-10-16 23:20:28.306][ef$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:20:28.307][ef$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:20:28.309][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-10-16 23:20:28.310][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-10-16 23:20:28.311][ef$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:20:28.312][ef$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:20:28.313][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-10-16 23:20:28.314][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-10-16 23:20:28.316][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-10-16 23:20:28.317][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-10-16 23:20:28.318][ef$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:20:28.319][ef$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:20:28.320][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-10-16 23:20:28.322][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-10-16 23:20:28.323][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-10-16 23:20:28.324][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:20:28.325][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:20:28.326][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-10-16 23:20:28.328][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-10-16 23:20:28.329][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:20:28.330][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:20:28.331][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-10-16 23:20:28.332][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-10-16 23:20:28.334][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:20:28.335][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:20:28.336][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [4648].
biodb.DEBUG[2024-10-16 23:20:28.338][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-10-16 23:20:28.339][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-10-16 23:20:28.340][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-10-16 23:20:28.347][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-10-16 23:20:28.348][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-10-16 23:20:28.349][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-10-16 23:20:28.350][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-10-16 23:20:28.352][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-10-16 23:20:28.353][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-10-16 23:20:28.355][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:20:28.356][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:20:28.357][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-10-16 23:20:28.358][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-10-16 23:20:28.359][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:20:28.360][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:20:28.362][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-10-16 23:20:28.363][private$selectFields]
biodb.TRACE[2024-10-16 23:20:28.364][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-10-16 23:20:28.365][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-10-16 23:20:28.366][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-10-16 23:20:28.367][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-10-16 23:20:28.369][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-10-16 23:20:28.370][ef$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:20:28.371][ef$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:20:28.372][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-10-16 23:20:28.373][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-10-16 23:20:28.374][ef$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:20:28.375][ef$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:20:28.377][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-10-16 23:20:28.378][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-10-16 23:20:28.379][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-10-16 23:20:28.380][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-10-16 23:20:28.381][ef$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:20:28.382][ef$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:20:28.384][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-10-16 23:20:28.385][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-10-16 23:20:28.386][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-10-16 23:20:28.387][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:20:28.388][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:20:28.389][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-10-16 23:20:28.391][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-10-16 23:20:28.392][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:20:28.393][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:20:28.394][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-10-16 23:20:28.395][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-10-16 23:20:28.396][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:20:28.398][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:20:28.399][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [15440].
biodb.DEBUG[2024-10-16 23:20:28.400][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-10-16 23:20:28.401][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-10-16 23:20:28.403][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-10-16 23:20:28.410][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-10-16 23:20:28.411][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-10-16 23:20:28.412][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-10-16 23:20:28.413][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-10-16 23:20:28.414][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-10-16 23:20:28.416][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-10-16 23:20:28.417][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:20:28.418][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:20:28.419][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-10-16 23:20:28.420][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-10-16 23:20:28.421][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:20:28.422][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:20:28.424][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-10-16 23:20:28.425][private$selectFields]
biodb.TRACE[2024-10-16 23:20:28.426][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-10-16 23:20:28.427][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-10-16 23:20:28.428][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-10-16 23:20:28.429][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-10-16 23:20:28.430][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-10-16 23:20:28.432][ef$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:20:28.433][ef$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:20:28.434][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-10-16 23:20:28.435][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-10-16 23:20:28.436][ef$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:20:28.437][ef$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:20:28.438][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-10-16 23:20:28.440][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-10-16 23:20:28.441][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-10-16 23:20:28.442][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-10-16 23:20:28.443][ef$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:20:28.444][ef$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:20:28.445][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-10-16 23:20:28.447][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-10-16 23:20:28.448][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-10-16 23:20:28.449][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:20:28.450][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:20:28.451][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-10-16 23:20:28.453][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-10-16 23:20:28.454][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:20:28.455][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:20:28.456][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-10-16 23:20:28.457][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-10-16 23:20:28.458][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:20:28.460][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:20:28.461][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [62447].
biodb.DEBUG[2024-10-16 23:20:28.462][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2024-10-16 23:20:28.464][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.TRACE[2024-10-16 23:20:28.479][self$getBiodb()$getEntryFields()$get] Asked field names are: nominal.mass.
biodb.TRACE[2024-10-16 23:20:28.481][self$getBiodb()$getEntryFields()$get] Realnames of fields are: nominal.mass.
biodb.TRACE[2024-10-16 23:20:28.482][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:20:28.483][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.INFO [2024-10-16 23:20:28.490][biodb::testThat]
biodb.INFO [2024-10-16 23:20:28.491][biodb::testThat] Running test function  test_annotateMzValues_input_dataframe_untouched  (" Input data frame is not modified by annotateMzValues() ").
biodb.INFO [2024-10-16 23:20:28.492][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-10-16 23:20:28.493][biodb::testThat]
biodb.TRACE[2024-10-16 23:20:28.497][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2024-10-16 23:20:28.498][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2024-10-16 23:20:28.499][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:20:28.500][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:20:28.502][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-10-16 23:20:28.503][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-10-16 23:20:28.504][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:20:28.505][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:20:28.506][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-10-16 23:20:28.508][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-10-16 23:20:28.509][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:20:28.510][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:20:28.511][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-10-16 23:20:28.512][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-10-16 23:20:28.514][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:20:28.515][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:20:28.516][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-10-16 23:20:28.517][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-10-16 23:20:28.518][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:20:28.519][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-10-16 23:20:28.525][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-10-16 23:20:28.526][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-10-16 23:20:28.527][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-10-16 23:20:28.534][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-10-16 23:20:28.535][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-10-16 23:20:28.536][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-10-16 23:20:28.537][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-10-16 23:20:28.540][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.72*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2024-10-16 23:20:28.543][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-10-16 23:20:28.545][cch$loadFileContent] Trying to load 1 files from cache: [1]: "dabc9e8530050c4ceebbaec76743bcf1".
biodb.TRACE[2024-10-16 23:20:28.546][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-10-16 23:20:28.548][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/dabc9e8530050c4ceebbaec76743bcf1.content".
biodb.DEBUG[2024-10-16 23:20:28.551][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-10-16 23:20:28.552][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-10-16 23:20:28.553][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-10-16 23:20:28.559][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-10-16 23:20:28.561][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-10-16 23:20:28.562][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-10-16 23:20:28.563][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-10-16 23:20:28.564][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-10-16 23:20:28.565][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-10-16 23:20:28.566][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:20:28.567][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:20:28.569][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-10-16 23:20:28.570][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-10-16 23:20:28.571][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:20:28.572][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:20:28.573][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-10-16 23:20:28.575][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-10-16 23:20:28.576][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:20:28.577][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-10-16 23:20:28.579][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.73*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2024-10-16 23:20:28.582][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-10-16 23:20:28.584][cch$loadFileContent] Trying to load 1 files from cache: [1]: "41b7f9723242a79cfe14bebd91dbb5b6".
biodb.TRACE[2024-10-16 23:20:28.586][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-10-16 23:20:28.588][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/41b7f9723242a79cfe14bebd91dbb5b6.content".
biodb.DEBUG[2024-10-16 23:20:28.590][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-10-16 23:20:28.591][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-10-16 23:20:28.592][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-10-16 23:20:28.599][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-10-16 23:20:28.601][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-10-16 23:20:28.602][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-10-16 23:20:28.603][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-10-16 23:20:28.604][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-10-16 23:20:28.605][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-10-16 23:20:28.607][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:20:28.608][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:20:28.609][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-10-16 23:20:28.610][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-10-16 23:20:28.612][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:20:28.613][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:20:28.614][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-10-16 23:20:28.615][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-10-16 23:20:28.616][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:20:28.617][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-10-16 23:20:28.619][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-10-16 23:20:28.620][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-10-16 23:20:28.621][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-10-16 23:20:28.628][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-10-16 23:20:28.629][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-10-16 23:20:28.630][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-10-16 23:20:28.632][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-10-16 23:20:28.633][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-10-16 23:20:28.634][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-10-16 23:20:28.635][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:20:28.637][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:20:28.638][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-10-16 23:20:28.639][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-10-16 23:20:28.640][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:20:28.641][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:20:28.643][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-10-16 23:20:28.644][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-10-16 23:20:28.645][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:20:28.646][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-10-16 23:20:28.648][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2024-10-16 23:20:28.649][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-10-16 23:20:28.650][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-10-16 23:20:28.651][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-10-16 23:20:28.658][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-10-16 23:20:28.660][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-10-16 23:20:28.661][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-10-16 23:20:28.662][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-10-16 23:20:28.663][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-10-16 23:20:28.664][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-10-16 23:20:28.666][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:20:28.667][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:20:28.668][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-10-16 23:20:28.669][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-10-16 23:20:28.670][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:20:28.672][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:20:28.673][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-10-16 23:20:28.674][private$selectFields]
biodb.TRACE[2024-10-16 23:20:28.675][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-10-16 23:20:28.676][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-10-16 23:20:28.677][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-10-16 23:20:28.678][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-10-16 23:20:28.680][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-10-16 23:20:28.681][ef$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:20:28.682][ef$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:20:28.683][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-10-16 23:20:28.684][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-10-16 23:20:28.685][ef$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:20:28.687][ef$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:20:28.688][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-10-16 23:20:28.689][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-10-16 23:20:28.690][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-10-16 23:20:28.691][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-10-16 23:20:28.692][ef$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:20:28.694][ef$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:20:28.695][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-10-16 23:20:28.696][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-10-16 23:20:28.697][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-10-16 23:20:28.698][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:20:28.700][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:20:28.701][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-10-16 23:20:28.702][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-10-16 23:20:28.703][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:20:28.704][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:20:28.706][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-10-16 23:20:28.707][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-10-16 23:20:28.708][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:20:28.709][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:20:28.711][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [192288].
biodb.DEBUG[2024-10-16 23:20:28.712][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-10-16 23:20:28.713][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-10-16 23:20:28.714][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-10-16 23:20:28.721][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-10-16 23:20:28.722][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-10-16 23:20:28.723][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-10-16 23:20:28.724][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-10-16 23:20:28.726][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-10-16 23:20:28.727][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-10-16 23:20:28.728][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:20:28.729][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:20:28.731][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-10-16 23:20:28.732][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-10-16 23:20:28.733][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:20:28.734][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:20:28.735][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-10-16 23:20:28.736][private$selectFields]
biodb.TRACE[2024-10-16 23:20:28.738][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-10-16 23:20:28.739][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-10-16 23:20:28.740][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-10-16 23:20:28.741][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-10-16 23:20:28.743][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-10-16 23:20:28.744][ef$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:20:28.746][ef$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:20:28.748][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-10-16 23:20:28.749][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-10-16 23:20:28.751][ef$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:20:28.752][ef$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:20:28.754][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-10-16 23:20:28.755][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-10-16 23:20:28.756][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-10-16 23:20:28.757][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-10-16 23:20:28.758][ef$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:20:28.759][ef$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:20:28.761][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-10-16 23:20:28.762][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-10-16 23:20:28.763][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-10-16 23:20:28.764][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:20:28.765][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:20:28.767][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-10-16 23:20:28.768][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-10-16 23:20:28.769][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:20:28.770][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:20:28.771][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-10-16 23:20:28.773][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-10-16 23:20:28.774][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:20:28.775][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:20:28.777][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [15440].
biodb.DEBUG[2024-10-16 23:20:28.778][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-10-16 23:20:28.779][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-10-16 23:20:28.780][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-10-16 23:20:28.787][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-10-16 23:20:28.788][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-10-16 23:20:28.789][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-10-16 23:20:28.790][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-10-16 23:20:28.792][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-10-16 23:20:28.793][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-10-16 23:20:28.794][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:20:28.795][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:20:28.796][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-10-16 23:20:28.798][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-10-16 23:20:28.799][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:20:28.800][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:20:28.801][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-10-16 23:20:28.802][private$selectFields]
biodb.TRACE[2024-10-16 23:20:28.803][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-10-16 23:20:28.805][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-10-16 23:20:28.806][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-10-16 23:20:28.807][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-10-16 23:20:28.808][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-10-16 23:20:28.809][ef$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:20:28.810][ef$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:20:28.812][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-10-16 23:20:28.813][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-10-16 23:20:28.814][ef$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:20:28.815][ef$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:20:28.816][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-10-16 23:20:28.818][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-10-16 23:20:28.819][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-10-16 23:20:28.820][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-10-16 23:20:28.821][ef$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:20:28.822][ef$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:20:28.823][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-10-16 23:20:28.825][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-10-16 23:20:28.826][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-10-16 23:20:28.827][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:20:28.828][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:20:28.829][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-10-16 23:20:28.831][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-10-16 23:20:28.832][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:20:28.833][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:20:28.834][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-10-16 23:20:28.835][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-10-16 23:20:28.836][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:20:28.838][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:20:28.839][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [209892].
biodb.DEBUG[2024-10-16 23:20:28.840][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2024-10-16 23:20:28.841][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.TRACE[2024-10-16 23:20:28.868][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-10-16 23:20:28.870][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-10-16 23:20:28.871][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:20:28.872][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:20:28.873][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-10-16 23:20:28.875][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-10-16 23:20:28.876][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:20:28.877][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:20:28.878][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-10-16 23:20:28.879][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-10-16 23:20:28.881][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:20:28.882][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:20:28.883][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-10-16 23:20:28.884][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-10-16 23:20:28.885][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:20:28.886][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-10-16 23:20:28.892][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-10-16 23:20:28.893][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-10-16 23:20:28.894][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-10-16 23:20:28.901][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-10-16 23:20:28.902][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-10-16 23:20:28.903][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-10-16 23:20:28.904][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-10-16 23:20:28.907][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.38*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2024-10-16 23:20:28.916][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-10-16 23:20:28.918][cch$loadFileContent] Trying to load 1 files from cache: [1]: "49f51d93ac229648aa454636918ce386".
biodb.TRACE[2024-10-16 23:20:28.920][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-10-16 23:20:28.922][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/49f51d93ac229648aa454636918ce386.content".
biodb.DEBUG[2024-10-16 23:20:28.925][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.39*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2024-10-16 23:20:28.928][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-10-16 23:20:28.930][cch$loadFileContent] Trying to load 1 files from cache: [1]: "121ea95906eb67bed88948c362686e4f".
biodb.TRACE[2024-10-16 23:20:28.931][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-10-16 23:20:28.933][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/121ea95906eb67bed88948c362686e4f.content".
biodb.DEBUG[2024-10-16 23:20:28.936][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-10-16 23:20:28.937][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-10-16 23:20:28.938][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-10-16 23:20:28.945][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-10-16 23:20:28.946][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-10-16 23:20:28.947][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-10-16 23:20:28.948][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-10-16 23:20:28.949][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-10-16 23:20:28.951][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-10-16 23:20:28.952][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:20:28.953][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:20:28.954][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-10-16 23:20:28.955][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-10-16 23:20:28.956][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:20:28.957][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:20:28.959][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-10-16 23:20:28.960][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-10-16 23:20:28.961][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:20:28.962][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-10-16 23:20:28.963][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-10-16 23:20:28.964][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-10-16 23:20:28.965][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-10-16 23:20:28.972][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-10-16 23:20:28.973][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-10-16 23:20:28.974][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-10-16 23:20:28.975][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-10-16 23:20:28.976][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-10-16 23:20:28.978][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-10-16 23:20:28.979][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:20:28.980][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:20:28.981][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-10-16 23:20:28.983][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-10-16 23:20:28.984][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:20:28.985][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:20:28.986][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-10-16 23:20:28.987][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-10-16 23:20:28.988][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:20:28.989][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-10-16 23:20:28.991][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-10-16 23:20:28.992][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-10-16 23:20:28.993][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-10-16 23:20:29.000][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-10-16 23:20:29.001][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-10-16 23:20:29.002][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-10-16 23:20:29.003][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-10-16 23:20:29.004][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-10-16 23:20:29.005][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-10-16 23:20:29.007][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:20:29.008][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:20:29.009][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-10-16 23:20:29.010][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-10-16 23:20:29.011][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:20:29.012][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:20:29.014][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-10-16 23:20:29.015][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-10-16 23:20:29.016][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:20:29.017][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-10-16 23:20:29.018][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2024-10-16 23:20:29.020][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-10-16 23:20:29.021][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-10-16 23:20:29.022][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-10-16 23:20:29.030][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-10-16 23:20:29.031][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-10-16 23:20:29.032][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-10-16 23:20:29.033][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-10-16 23:20:29.034][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-10-16 23:20:29.036][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-10-16 23:20:29.037][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:20:29.038][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:20:29.039][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-10-16 23:20:29.041][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-10-16 23:20:29.042][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:20:29.044][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:20:29.045][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-10-16 23:20:29.046][private$selectFields]
biodb.TRACE[2024-10-16 23:20:29.047][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-10-16 23:20:29.048][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-10-16 23:20:29.049][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-10-16 23:20:29.051][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-10-16 23:20:29.052][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-10-16 23:20:29.053][ef$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:20:29.054][ef$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:20:29.055][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-10-16 23:20:29.057][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-10-16 23:20:29.058][ef$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:20:29.059][ef$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:20:29.060][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-10-16 23:20:29.061][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-10-16 23:20:29.062][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-10-16 23:20:29.064][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-10-16 23:20:29.065][ef$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:20:29.066][ef$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:20:29.067][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-10-16 23:20:29.068][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-10-16 23:20:29.070][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-10-16 23:20:29.071][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:20:29.072][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:20:29.073][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-10-16 23:20:29.074][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-10-16 23:20:29.076][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:20:29.077][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:20:29.078][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-10-16 23:20:29.079][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-10-16 23:20:29.080][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:20:29.081][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:20:29.083][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [4648].
biodb.DEBUG[2024-10-16 23:20:29.084][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-10-16 23:20:29.085][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-10-16 23:20:29.086][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-10-16 23:20:29.093][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-10-16 23:20:29.094][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-10-16 23:20:29.096][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-10-16 23:20:29.097][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-10-16 23:20:29.098][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-10-16 23:20:29.099][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-10-16 23:20:29.101][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:20:29.102][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:20:29.103][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-10-16 23:20:29.104][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-10-16 23:20:29.105][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:20:29.106][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:20:29.108][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-10-16 23:20:29.109][private$selectFields]
biodb.TRACE[2024-10-16 23:20:29.110][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-10-16 23:20:29.111][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-10-16 23:20:29.112][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-10-16 23:20:29.113][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-10-16 23:20:29.115][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-10-16 23:20:29.116][ef$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:20:29.117][ef$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:20:29.118][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-10-16 23:20:29.119][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-10-16 23:20:29.120][ef$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:20:29.122][ef$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:20:29.123][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-10-16 23:20:29.124][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-10-16 23:20:29.125][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-10-16 23:20:29.126][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-10-16 23:20:29.127][ef$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:20:29.128][ef$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:20:29.130][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-10-16 23:20:29.131][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-10-16 23:20:29.132][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-10-16 23:20:29.133][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:20:29.135][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:20:29.136][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-10-16 23:20:29.137][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-10-16 23:20:29.138][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:20:29.139][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:20:29.140][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-10-16 23:20:29.142][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-10-16 23:20:29.143][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:20:29.144][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:20:29.145][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [15440].
biodb.DEBUG[2024-10-16 23:20:29.147][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-10-16 23:20:29.148][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-10-16 23:20:29.149][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-10-16 23:20:29.156][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-10-16 23:20:29.157][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-10-16 23:20:29.158][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-10-16 23:20:29.159][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-10-16 23:20:29.160][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-10-16 23:20:29.162][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-10-16 23:20:29.163][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:20:29.164][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:20:29.165][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-10-16 23:20:29.166][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-10-16 23:20:29.168][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:20:29.169][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:20:29.170][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-10-16 23:20:29.171][private$selectFields]
biodb.TRACE[2024-10-16 23:20:29.172][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-10-16 23:20:29.173][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-10-16 23:20:29.174][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-10-16 23:20:29.176][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-10-16 23:20:29.177][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-10-16 23:20:29.178][ef$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:20:29.179][ef$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:20:29.180][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-10-16 23:20:29.181][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-10-16 23:20:29.183][ef$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:20:29.184][ef$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:20:29.185][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-10-16 23:20:29.186][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-10-16 23:20:29.187][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-10-16 23:20:29.188][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-10-16 23:20:29.189][ef$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:20:29.191][ef$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:20:29.192][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-10-16 23:20:29.193][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-10-16 23:20:29.194][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-10-16 23:20:29.195][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:20:29.196][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:20:29.198][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-10-16 23:20:29.199][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-10-16 23:20:29.200][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:20:29.201][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:20:29.202][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-10-16 23:20:29.204][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-10-16 23:20:29.205][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:20:29.206][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:20:29.207][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [62447].
biodb.DEBUG[2024-10-16 23:20:29.209][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2024-10-16 23:20:29.210][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.TRACE[2024-10-16 23:20:29.236][self$getBiodb()$getEntryFields()$get] Asked field names are: nominal.mass.
biodb.TRACE[2024-10-16 23:20:29.238][self$getBiodb()$getEntryFields()$get] Realnames of fields are: nominal.mass.
biodb.TRACE[2024-10-16 23:20:29.239][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:20:29.240][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.INFO [2024-10-16 23:20:29.247][biodb::testThat]
biodb.INFO [2024-10-16 23:20:29.248][biodb::testThat] Running test function  test.wrong.entry  (" Wrong entry gives NULL ").
biodb.INFO [2024-10-16 23:20:29.249][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-10-16 23:20:29.250][biodb::testThat]
biodb.DEBUG[2024-10-16 23:20:29.252][private$loadEntries] Creating entries from ids [1]: "WRONGA".
biodb.DEBUG[2024-10-16 23:20:29.254][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2024-10-16 23:20:29.256][cch$loadFileContent] Trying to load 1 files from cache: [1]: "WRONGA".
biodb.TRACE[2024-10-16 23:20:29.258][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2024-10-16 23:20:29.259][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2024-10-16 23:20:29.261][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2024-10-16 23:20:29.262][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2024-10-16 23:20:29.264][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2024-10-16 23:20:29.265][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2024-10-16 23:20:29.268][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-10-16 23:20:29.269][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-10-16 23:20:29.270][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-10-16 23:20:29.277][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-10-16 23:20:29.278][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-10-16 23:20:29.280][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-10-16 23:20:29.281][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-10-16 23:20:29.282][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=WRONGA".
biodb.DEBUG[2024-10-16 23:20:29.285][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-10-16 23:20:29.286][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-10-16 23:20:29.288][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=WRONGA".
biodb.TRACE[2024-10-16 23:20:29.725][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=WRONGA).
biodb.DEBUG[2024-10-16 23:20:30.109][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2024-10-16 23:20:30.114][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/b5b4e4941cdc7bc8ff5e29f921c1e9db.content"
biodb.TRACE[2024-10-16 23:20:30.192][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/b5b4e4941cdc7bc8ff5e29f921c1e9db.request"
biodb.TRACE[2024-10-16 23:20:30.199][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/WRONGA.xml"
biodb.DEBUG[2024-10-16 23:20:30.203][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2024-10-16 23:20:30.205][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2024-10-16 23:20:30.208][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2024-10-16 23:20:30.211][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-10-16 23:20:30.213][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-10-16 23:20:30.215][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-10-16 23:20:34.091][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-10-16 23:20:34.093][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-10-16 23:20:34.094][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-10-16 23:20:34.095][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-10-16 23:20:34.098][ef$get] Asked field names are: accession.
biodb.TRACE[2024-10-16 23:20:34.099][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-10-16 23:20:34.101][ef$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:20:34.103][ef$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:20:34.105][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-10-16 23:20:34.107][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-10-16 23:20:34.117][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:20:34.118][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:20:34.119][ef$get] Asked field names are: charge.
biodb.TRACE[2024-10-16 23:20:34.121][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-10-16 23:20:34.122][ef$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:20:34.123][ef$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:20:34.124][ef$get] Asked field names are: formula.
biodb.TRACE[2024-10-16 23:20:34.126][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-10-16 23:20:34.127][ef$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:20:34.128][ef$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:20:34.130][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-10-16 23:20:34.131][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-10-16 23:20:34.132][ef$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:20:34.133][ef$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:20:34.134][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-10-16 23:20:34.136][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-10-16 23:20:34.137][ef$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:20:34.138][ef$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:20:34.139][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-10-16 23:20:34.141][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-10-16 23:20:34.142][ef$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:20:34.143][ef$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:20:34.144][ef$get] Asked field names are: mass.
biodb.TRACE[2024-10-16 23:20:34.146][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-10-16 23:20:34.147][ef$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:20:34.148][ef$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:20:34.149][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-10-16 23:20:34.151][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-10-16 23:20:34.152][ef$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:20:34.153][ef$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:20:34.154][ef$get] Asked field names are: name.
biodb.TRACE[2024-10-16 23:20:34.156][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-10-16 23:20:34.157][ef$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:20:34.158][ef$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:20:34.159][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-10-16 23:20:34.161][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-10-16 23:20:34.162][ef$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:20:34.163][ef$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:20:34.164][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-10-16 23:20:34.166][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-10-16 23:20:34.167][ef$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:20:34.168][ef$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:20:34.169][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-10-16 23:20:34.171][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-10-16 23:20:34.172][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:20:34.173][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:20:34.174][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-10-16 23:20:34.175][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-10-16 23:20:34.177][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:20:34.178][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:20:34.179][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-10-16 23:20:34.180][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-10-16 23:20:34.181][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:20:34.182][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:20:34.184][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-10-16 23:20:34.185][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-10-16 23:20:34.186][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:20:34.187][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:20:34.188][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-10-16 23:20:34.190][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-10-16 23:20:34.191][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:20:34.192][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:20:34.193][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-10-16 23:20:34.195][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-10-16 23:20:34.196][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:20:34.197][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:20:34.198][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-10-16 23:20:34.199][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-10-16 23:20:34.200][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:20:34.202][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:20:34.203][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-10-16 23:20:34.204][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-10-16 23:20:34.205][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:20:34.207][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:20:34.208][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-10-16 23:20:34.209][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-10-16 23:20:34.210][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:20:34.211][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:20:34.213][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-10-16 23:20:34.214][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-10-16 23:20:34.215][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:20:34.216][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-10-16 23:20:34.217][self$createEntryFromContent] Accession numbers: .
biodb.DEBUG[2024-10-16 23:20:34.219][self$createEntryFromContent] Found 1 entry/ies without an accession number. Set it/them to NULL.
biodb.INFO [2024-10-16 23:20:35.542][biodb::testThat]
biodb.INFO [2024-10-16 23:20:35.545][biodb::testThat] Running test function  test.wrong.entry.among.good.ones  (" One wrong entry does not block the retrieval of good ones ").
biodb.INFO [2024-10-16 23:20:35.547][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-10-16 23:20:35.548][biodb::testThat]
biodb.DEBUG[2024-10-16 23:20:37.460][function(conn, opt)] IDS: [4]: "WRONGB, 15440, 2528, 7799"
biodb.DEBUG[2024-10-16 23:20:37.462][private$loadEntries] Creating entries from ids [3]: "WRONGB, 2528, 7799".
biodb.DEBUG[2024-10-16 23:20:37.463][conn$getEntryContent] Get ChEBI entry content(s) for 3 id(s)...
biodb.TRACE[2024-10-16 23:20:37.465][cch$loadFileContent] Trying to load 3 files from cache: [3]: "WRONGB, 2528, 7799".
biodb.TRACE[2024-10-16 23:20:37.467][cch$loadFileContent] file.exist = [3]: "FALSE, TRUE, TRUE".
biodb.TRACE[2024-10-16 23:20:37.488][loadFileContents] Loaded 2 files from cache: [2]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/2528.xml, C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/7799.xml".
biodb.DEBUG[2024-10-16 23:20:37.490][conn$getEntryContent] 2 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2024-10-16 23:20:37.491][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2024-10-16 23:20:37.492][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2024-10-16 23:20:37.493][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2024-10-16 23:20:37.506][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-10-16 23:20:37.507][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-10-16 23:20:37.508][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-10-16 23:20:40.365][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-10-16 23:20:40.366][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-10-16 23:20:40.367][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-10-16 23:20:40.369][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-10-16 23:20:40.371][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=WRONGB".
biodb.DEBUG[2024-10-16 23:20:40.388][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-10-16 23:20:40.390][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-10-16 23:20:40.403][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=WRONGB".
biodb.TRACE[2024-10-16 23:20:40.820][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=WRONGB).
biodb.DEBUG[2024-10-16 23:20:41.183][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2024-10-16 23:20:41.186][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/32348f2b7cfb460a97c8a8aa145f239f.content"
biodb.TRACE[2024-10-16 23:20:41.191][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/32348f2b7cfb460a97c8a8aa145f239f.request"
biodb.TRACE[2024-10-16 23:20:41.194][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/WRONGB.xml"
biodb.DEBUG[2024-10-16 23:20:41.197][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2024-10-16 23:20:41.198][self$createEntryFromContent] Creating ChEBI entries from 3 content(s).
biodb.DEBUG[2024-10-16 23:20:41.200][self$createEntryFromContent] Parsing 3 ChEBI entries.
biodb.DEBUG[2024-10-16 23:20:41.202][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-10-16 23:20:41.203][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-10-16 23:20:41.204][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-10-16 23:20:41.296][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-10-16 23:20:41.297][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-10-16 23:20:41.298][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-10-16 23:20:41.299][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-10-16 23:20:41.302][ef$get] Asked field names are: accession.
biodb.TRACE[2024-10-16 23:20:41.303][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-10-16 23:20:41.305][ef$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:20:41.306][ef$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:20:41.308][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-10-16 23:20:41.309][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-10-16 23:20:41.310][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:20:41.312][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:20:41.313][ef$get] Asked field names are: charge.
biodb.TRACE[2024-10-16 23:20:41.314][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-10-16 23:20:41.315][ef$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:20:41.316][ef$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:20:41.318][ef$get] Asked field names are: formula.
biodb.TRACE[2024-10-16 23:20:41.319][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-10-16 23:20:41.320][ef$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:20:41.322][ef$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:20:41.323][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-10-16 23:20:41.324][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-10-16 23:20:41.326][ef$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:20:41.327][ef$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:20:41.328][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-10-16 23:20:41.329][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-10-16 23:20:41.330][ef$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:20:41.332][ef$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:20:41.333][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-10-16 23:20:41.334][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-10-16 23:20:41.335][ef$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:20:41.336][ef$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:20:41.338][ef$get] Asked field names are: mass.
biodb.TRACE[2024-10-16 23:20:41.339][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-10-16 23:20:41.340][ef$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:20:41.341][ef$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:20:41.343][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-10-16 23:20:41.344][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-10-16 23:20:41.345][ef$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:20:41.346][ef$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:20:41.348][ef$get] Asked field names are: name.
biodb.TRACE[2024-10-16 23:20:41.349][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-10-16 23:20:41.350][ef$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:20:41.351][ef$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:20:41.353][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-10-16 23:20:41.354][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-10-16 23:20:41.355][ef$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:20:41.356][ef$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:20:41.358][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-10-16 23:20:41.359][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-10-16 23:20:41.360][ef$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:20:41.361][ef$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:20:41.363][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-10-16 23:20:41.364][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-10-16 23:20:41.365][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:20:41.367][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:20:41.368][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-10-16 23:20:41.369][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-10-16 23:20:41.371][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:20:41.372][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:20:41.373][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-10-16 23:20:41.374][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-10-16 23:20:41.375][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:20:41.377][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:20:41.378][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-10-16 23:20:41.379][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-10-16 23:20:41.380][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:20:41.381][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:20:41.383][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-10-16 23:20:41.384][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-10-16 23:20:41.386][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:20:41.388][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:20:41.389][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-10-16 23:20:41.391][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-10-16 23:20:41.393][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:20:41.395][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:20:41.396][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-10-16 23:20:41.397][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-10-16 23:20:41.399][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:20:41.400][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-10-16 23:20:41.402][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-10-16 23:20:41.403][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-10-16 23:20:41.404][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-10-16 23:20:41.423][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-10-16 23:20:41.425][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-10-16 23:20:41.427][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-10-16 23:20:41.429][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-10-16 23:20:41.433][ef$get] Asked field names are: accession.
biodb.TRACE[2024-10-16 23:20:41.435][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-10-16 23:20:41.437][ef$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:20:41.439][ef$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:20:41.441][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-10-16 23:20:41.443][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-10-16 23:20:41.445][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:20:41.447][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:20:41.449][ef$get] Asked field names are: charge.
biodb.TRACE[2024-10-16 23:20:41.451][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-10-16 23:20:41.453][ef$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:20:41.455][ef$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:20:41.457][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-10-16 23:20:41.458][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-10-16 23:20:41.460][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:20:41.461][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:20:41.462][ef$get] Asked field names are: formula.
biodb.TRACE[2024-10-16 23:20:41.463][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-10-16 23:20:41.465][ef$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:20:41.466][ef$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:20:41.468][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-10-16 23:20:41.471][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-10-16 23:20:41.472][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:20:41.474][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:20:41.476][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-10-16 23:20:41.479][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-10-16 23:20:41.480][ef$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:20:41.482][ef$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:20:41.485][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-10-16 23:20:41.487][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-10-16 23:20:41.489][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:20:41.491][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:20:41.494][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-10-16 23:20:41.496][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-10-16 23:20:41.499][ef$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:20:41.517][ef$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:20:41.520][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-10-16 23:20:41.522][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-10-16 23:20:41.524][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:20:41.526][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:20:41.528][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-10-16 23:20:41.542][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-10-16 23:20:41.544][ef$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:20:41.546][ef$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:20:41.549][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-10-16 23:20:41.551][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-10-16 23:20:41.553][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:20:41.555][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:20:41.558][ef$get] Asked field names are: mass.
biodb.TRACE[2024-10-16 23:20:41.560][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-10-16 23:20:41.562][ef$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:20:41.564][ef$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:20:41.566][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2024-10-16 23:20:41.568][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-10-16 23:20:41.570][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:20:41.572][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:20:41.575][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-10-16 23:20:41.577][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-10-16 23:20:41.580][ef$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:20:41.582][ef$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:20:41.585][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-10-16 23:20:41.588][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-10-16 23:20:41.601][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:20:41.603][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:20:41.606][ef$get] Asked field names are: name.
biodb.TRACE[2024-10-16 23:20:41.608][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-10-16 23:20:41.610][ef$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:20:41.611][ef$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:20:41.614][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-10-16 23:20:41.616][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-10-16 23:20:41.618][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:20:41.619][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:20:41.621][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-10-16 23:20:41.623][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-10-16 23:20:41.625][ef$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:20:41.627][ef$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:20:41.629][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2024-10-16 23:20:41.631][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-10-16 23:20:41.633][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:20:41.634][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:20:41.636][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-10-16 23:20:41.638][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-10-16 23:20:41.640][ef$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:20:41.642][ef$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:20:41.644][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-10-16 23:20:41.646][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-10-16 23:20:41.648][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:20:41.649][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:20:41.651][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-10-16 23:20:41.653][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-10-16 23:20:41.655][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:20:41.657][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:20:41.659][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-10-16 23:20:41.661][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-10-16 23:20:41.662][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:20:41.664][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:20:41.666][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-10-16 23:20:41.668][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-10-16 23:20:41.670][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:20:41.671][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:20:41.673][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-10-16 23:20:41.675][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-10-16 23:20:41.677][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:20:41.679][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:20:41.681][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-10-16 23:20:41.683][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-10-16 23:20:41.684][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:20:41.686][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:20:41.688][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-10-16 23:20:41.690][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-10-16 23:20:41.692][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:20:41.693][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:20:41.695][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-10-16 23:20:41.697][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-10-16 23:20:41.699][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:20:41.701][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-10-16 23:20:41.703][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-10-16 23:20:41.704][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-10-16 23:20:41.706][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-10-16 23:20:41.717][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-10-16 23:20:41.719][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-10-16 23:20:41.721][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-10-16 23:20:41.723][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-10-16 23:20:41.727][ef$get] Asked field names are: accession.
biodb.TRACE[2024-10-16 23:20:41.730][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-10-16 23:20:41.733][ef$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:20:41.734][ef$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:20:41.737][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-10-16 23:20:41.739][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-10-16 23:20:46.916][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:20:46.918][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:20:46.920][ef$get] Asked field names are: charge.
biodb.TRACE[2024-10-16 23:20:46.921][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-10-16 23:20:46.923][ef$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:20:46.924][ef$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:20:46.925][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-10-16 23:20:46.927][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-10-16 23:20:46.928][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:20:46.929][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:20:46.930][ef$get] Asked field names are: formula.
biodb.TRACE[2024-10-16 23:20:46.932][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-10-16 23:20:46.933][ef$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:20:46.934][ef$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:20:46.935][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-10-16 23:20:46.937][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-10-16 23:20:46.938][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:20:46.939][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:20:46.941][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-10-16 23:20:46.942][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-10-16 23:20:46.943][ef$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:20:46.944][ef$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:20:46.946][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-10-16 23:20:46.947][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-10-16 23:20:46.948][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:20:46.949][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:20:46.951][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-10-16 23:20:46.952][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-10-16 23:20:46.953][ef$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:20:46.954][ef$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:20:46.956][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-10-16 23:20:46.957][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-10-16 23:20:46.958][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:20:46.959][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:20:46.961][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-10-16 23:20:46.962][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-10-16 23:20:46.963][ef$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:20:46.964][ef$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:20:46.966][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-10-16 23:20:46.967][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-10-16 23:20:46.968][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:20:46.969][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:20:46.970][ef$get] Asked field names are: mass.
biodb.TRACE[2024-10-16 23:20:46.972][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-10-16 23:20:46.973][ef$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:20:46.974][ef$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:20:46.975][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2024-10-16 23:20:46.977][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-10-16 23:20:46.978][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:20:46.979][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:20:46.980][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-10-16 23:20:46.982][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-10-16 23:20:46.983][ef$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:20:46.984][ef$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:20:46.985][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-10-16 23:20:46.987][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-10-16 23:20:46.988][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:20:46.989][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:20:46.990][ef$get] Asked field names are: name.
biodb.TRACE[2024-10-16 23:20:46.991][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-10-16 23:20:46.993][ef$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:20:46.994][ef$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:20:46.995][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-10-16 23:20:46.997][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-10-16 23:20:46.998][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:20:46.999][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:20:47.000][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-10-16 23:20:47.001][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-10-16 23:20:47.003][ef$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:20:47.004][ef$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:20:47.005][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2024-10-16 23:20:47.006][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-10-16 23:20:47.008][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:20:47.009][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:20:47.010][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-10-16 23:20:47.011][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-10-16 23:20:47.012][ef$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:20:47.014][ef$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:20:47.015][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-10-16 23:20:47.016][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-10-16 23:20:47.017][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:20:47.018][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:20:47.020][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-10-16 23:20:47.021][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-10-16 23:20:47.022][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:20:47.023][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:20:47.025][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-10-16 23:20:47.026][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-10-16 23:20:47.027][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:20:47.028][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:20:47.029][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-10-16 23:20:47.031][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-10-16 23:20:47.032][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:20:47.033][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:20:47.034][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-10-16 23:20:47.036][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-10-16 23:20:47.037][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:20:47.038][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:20:47.039][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-10-16 23:20:47.040][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-10-16 23:20:47.042][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:20:47.043][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:20:47.044][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-10-16 23:20:47.045][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-10-16 23:20:47.046][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:20:47.047][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:20:47.049][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-10-16 23:20:47.050][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-10-16 23:20:47.051][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:20:47.052][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:20:47.054][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-10-16 23:20:47.055][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-10-16 23:20:47.056][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:20:47.057][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:20:47.058][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-10-16 23:20:47.060][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-10-16 23:20:47.061][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:20:47.062][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:20:47.063][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-10-16 23:20:47.064][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-10-16 23:20:47.066][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:20:47.067][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:20:47.068][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-10-16 23:20:47.069][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-10-16 23:20:47.070][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:20:47.072][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:20:47.073][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-10-16 23:20:47.074][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-10-16 23:20:47.075][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:20:47.076][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:20:47.078][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-10-16 23:20:47.079][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-10-16 23:20:47.080][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:20:47.081][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:20:47.082][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-10-16 23:20:47.084][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-10-16 23:20:47.085][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:20:47.086][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:20:47.087][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-10-16 23:20:47.088][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-10-16 23:20:47.090][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:20:47.091][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:20:47.092][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-10-16 23:20:47.093][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-10-16 23:20:47.094][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:20:47.095][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-10-16 23:20:47.097][self$createEntryFromContent] Accession numbers: , 2528, 7799.
biodb.DEBUG[2024-10-16 23:20:47.098][self$createEntryFromContent] Found 1 entry/ies without an accession number. Set it/them to NULL.
biodb.DEBUG[2024-10-16 23:20:47.099][function(conn, opt)] Entries: [4]: "NULL, <environment>, <environment>, <environment>"
biodb.INFO [2024-10-16 23:20:47.806][biodb::testThat]
biodb.INFO [2024-10-16 23:20:47.808][biodb::testThat] Running test function  test.peak.table  (" The peak table is correct. ").
biodb.INFO [2024-10-16 23:20:47.809][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-10-16 23:20:47.811][biodb::testThat]
biodb.INFO [2024-10-16 23:20:50.767][biodb::testThat]
biodb.INFO [2024-10-16 23:20:50.768][biodb::testThat] Running test function  test.nb.entries  (" Nb entries is positive. ").
biodb.INFO [2024-10-16 23:20:50.770][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-10-16 23:20:50.771][biodb::testThat]
biodb.INFO [2024-10-16 23:20:50.783][biodb::testThat]
biodb.INFO [2024-10-16 23:20:50.785][biodb::testThat] Running test function  test.entry.ids  (" We can get a list of entry ids. ").
biodb.INFO [2024-10-16 23:20:50.786][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-10-16 23:20:50.787][biodb::testThat]
biodb.DEBUG[2024-10-16 23:20:50.790][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=1*&searchCategory=CHEBI ID&maximumResults=100&starsCategory=ALL".
biodb.DEBUG[2024-10-16 23:20:50.794][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-10-16 23:20:50.795][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-10-16 23:20:50.797][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=1%2A&searchCategory=CHEBI%20ID&maximumResults=100&starsCategory=ALL".
biodb.TRACE[2024-10-16 23:20:52.441][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=1%2A&searchCategory=CHEBI%20ID&maximumResults=100&starsCategory=ALL).
biodb.DEBUG[2024-10-16 23:20:52.949][self$getBiodb()$getRequestScheduler( ...] Saving content of request to cache.
biodb.TRACE[2024-10-16 23:20:52.952][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/aed2cd6d5d221333c0a30a9f8dbc41b4.content"
biodb.TRACE[2024-10-16 23:20:52.958][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/aed2cd6d5d221333c0a30a9f8dbc41b4.request"
biodb.TRACE[2024-10-16 23:20:52.987][ef$get] Asked field names are: name.
biodb.TRACE[2024-10-16 23:20:52.989][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-10-16 23:20:52.990][ef$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:20:52.991][ef$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:20:52.992][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-10-16 23:20:52.994][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-10-16 23:20:52.995][ef$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:20:52.996][ef$get] fields variable is a list.
biodb.INFO [2024-10-16 23:20:52.998][biodb::testThat]
biodb.INFO [2024-10-16 23:20:52.999][biodb::testThat] Running test function  test.annotateMzValues  (" annotateMzValues() works correctly. ").
biodb.INFO [2024-10-16 23:20:53.000][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-10-16 23:20:53.002][biodb::testThat]
biodb.ERROR[2024-10-16 23:20:53.025][conn$annotateMzValues] No column named "mz" was found inside data frame.
biodb.ERROR[2024-10-16 23:20:53.041][ef$checkIsDefined] Field(s) "foo" is/are not defined.
biodb.INFO [2024-10-16 23:20:53.056][biodb$terminate] Closing BiodbMain instance...
biodb.DEBUG[2024-10-16 23:20:53.057][private$conn[[conn]]$.__enclos_env__ ...] Unregister connector chebi from the request scheduler
biodb.INFO [2024-10-16 23:20:53.059][self$deleteConn] Connector "chebi" deleted.
biodb.DEBUG[2024-10-16 23:20:53.060][notifyObservers] Notify observers for terminate.
biodb.DEBUG[2024-10-16 23:20:53.061][FUN] Trying to call function terminate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-10-16 23:20:53.062][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-10-16 23:20:53.063][FUN] Trying to call function terminate on observer BiodbEntryFields.
biodb.DEBUG[2024-10-16 23:20:53.064][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-10-16 23:20:53.065][FUN] Trying to call function terminate on observer BiodbConfig.
biodb.DEBUG[2024-10-16 23:20:53.066][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.INFO [2024-10-16 23:20:53.304][biodb::testContext]
biodb.INFO [2024-10-16 23:20:53.306][biodb::testContext] ********************************************************************************
biodb.INFO [2024-10-16 23:20:53.307][biodb::testContext] Test context - Test conversions
biodb.INFO [2024-10-16 23:20:53.308][biodb::testContext] ********************************************************************************
biodb.INFO [2024-10-16 23:20:53.309][biodb::testContext]
biodb.INFO [2024-10-16 23:20:53.312][private$loadBiodbPkgsDefinitions] Loading definitions from package biodb version 1.12.0.
biodb.DEBUG[2024-10-16 23:20:53.314][self$loadDefinitions] Load definitions from file "E:/biocbuild/bbs-3.19-bioc/R/library/biodb/definitions.yml".
biodb.DEBUG[2024-10-16 23:20:53.320][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2024-10-16 23:20:53.321][self$getConfig()$define] Define config key allow.huge.downloads.
biodb.DEBUG[2024-10-16 23:20:53.322][self$set] Set key allow.huge.downloads to TRUE.
biodb.DEBUG[2024-10-16 23:20:53.323][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-10-16 23:20:53.324][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-10-16 23:20:53.325][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-10-16 23:20:53.327][self$getConfig()$define] Define config key autoload.extra.pkgs.
biodb.DEBUG[2024-10-16 23:20:53.328][self$set] Set key autoload.extra.pkgs to TRUE.
biodb.DEBUG[2024-10-16 23:20:53.329][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-10-16 23:20:53.330][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-10-16 23:20:53.331][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-10-16 23:20:53.332][self$getConfig()$define] Define config key cache.all.requests.
biodb.DEBUG[2024-10-16 23:20:53.333][self$set] Set key cache.all.requests to TRUE.
biodb.DEBUG[2024-10-16 23:20:53.334][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-10-16 23:20:53.335][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-10-16 23:20:53.336][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-10-16 23:20:53.337][self$getConfig()$define] Define config key cache.directory.
biodb.DEBUG[2024-10-16 23:20:53.339][self$getConfig()$define] Define config key cache.read.only.
biodb.DEBUG[2024-10-16 23:20:53.340][self$set] Set key cache.read.only to FALSE.
biodb.DEBUG[2024-10-16 23:20:53.341][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-10-16 23:20:53.342][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-10-16 23:20:53.343][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-10-16 23:20:53.344][self$getConfig()$define] Define config key cache.subfolders.
biodb.DEBUG[2024-10-16 23:20:53.345][self$getConfig()$define] Define config key cache.system.
biodb.DEBUG[2024-10-16 23:20:53.347][self$set] Set key cache.system to TRUE.
biodb.DEBUG[2024-10-16 23:20:53.348][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-10-16 23:20:53.349][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-10-16 23:20:53.350][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-10-16 23:20:53.351][self$getConfig()$define] Define config key use.cache.for.local.db.
biodb.DEBUG[2024-10-16 23:20:53.352][self$set] Set key use.cache.for.local.db to FALSE.
biodb.DEBUG[2024-10-16 23:20:53.353][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-10-16 23:20:53.354][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-10-16 23:20:53.355][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-10-16 23:20:53.356][self$getConfig()$define] Define config key dwnld.chunk.size.
biodb.DEBUG[2024-10-16 23:20:53.358][self$getConfig()$define] Define config key dwnld.timeout.
biodb.DEBUG[2024-10-16 23:20:53.359][self$set] Set key dwnld.timeout to 3600.
biodb.DEBUG[2024-10-16 23:20:53.360][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-10-16 23:20:53.361][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-10-16 23:20:53.362][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-10-16 23:20:53.363][self$getConfig()$define] Define config key compute.fields.
biodb.DEBUG[2024-10-16 23:20:53.365][self$set] Set key compute.fields to TRUE.
biodb.DEBUG[2024-10-16 23:20:53.366][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-10-16 23:20:53.367][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-10-16 23:20:53.368][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-10-16 23:20:53.369][self$getConfig()$define] Define config key factory.cache.
biodb.DEBUG[2024-10-16 23:20:53.370][self$getConfig()$define] Define config key force.locale.
biodb.DEBUG[2024-10-16 23:20:53.371][self$set] Set key force.locale to TRUE.
biodb.DEBUG[2024-10-16 23:20:53.372][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-10-16 23:20:53.374][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-10-16 23:20:53.375][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-10-16 23:20:53.376][self$getConfig()$define] Define config key longterm.cache.subfolder.
biodb.DEBUG[2024-10-16 23:20:53.377][self$getConfig()$define] Define config key msg.caution.lvl.
biodb.DEBUG[2024-10-16 23:20:53.378][self$getConfig()$define] Define config key msg.debug.lvl.
biodb.DEBUG[2024-10-16 23:20:53.379][self$getConfig()$define] Define config key msg.info.lvl.
biodb.DEBUG[2024-10-16 23:20:53.381][self$getConfig()$define] Define config key multival.field.sep.
biodb.DEBUG[2024-10-16 23:20:53.382][self$set] Set key multival.field.sep to ";".
biodb.DEBUG[2024-10-16 23:20:53.383][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-10-16 23:20:53.384][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-10-16 23:20:53.385][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-10-16 23:20:53.386][self$getConfig()$define] Define config key intra.field.name.sep.
biodb.DEBUG[2024-10-16 23:20:53.387][self$set] Set key intra.field.name.sep to ".".
biodb.DEBUG[2024-10-16 23:20:53.388][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-10-16 23:20:53.389][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-10-16 23:20:53.390][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-10-16 23:20:53.392][self$getConfig()$define] Define config key entries.sep.
biodb.DEBUG[2024-10-16 23:20:53.393][self$set] Set key entries.sep to "|".
biodb.DEBUG[2024-10-16 23:20:53.394][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-10-16 23:20:53.395][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-10-16 23:20:53.396][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-10-16 23:20:53.397][self$getConfig()$define] Define config key offline.
biodb.DEBUG[2024-10-16 23:20:53.398][self$set] Set key offline to FALSE.
biodb.DEBUG[2024-10-16 23:20:53.399][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-10-16 23:20:53.400][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-10-16 23:20:53.401][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-10-16 23:20:53.403][self$getConfig()$define] Define config key persistent.cache.impl.
biodb.DEBUG[2024-10-16 23:20:53.404][self$set] Set key persistent.cache.impl to "custom".
biodb.DEBUG[2024-10-16 23:20:53.405][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-10-16 23:20:53.406][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-10-16 23:20:53.407][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-10-16 23:20:53.408][self$getConfig()$define] Define config key proton.mass.
biodb.DEBUG[2024-10-16 23:20:53.409][self$set] Set key proton.mass to 1.0072765.
biodb.DEBUG[2024-10-16 23:20:53.410][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-10-16 23:20:53.412][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-10-16 23:20:53.413][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-10-16 23:20:53.414][self$getConfig()$define] Define config key shortterm.cache.subfolder.
biodb.DEBUG[2024-10-16 23:20:53.415][self$getConfig()$define] Define config key svn.binary.path.
biodb.DEBUG[2024-10-16 23:20:53.418][self$set] Set key svn.binary.path to "".
biodb.DEBUG[2024-10-16 23:20:53.419][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-10-16 23:20:53.420][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-10-16 23:20:53.421][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-10-16 23:20:53.422][self$getConfig()$define] Define config key test.functions.
biodb.DEBUG[2024-10-16 23:20:53.424][self$getConfig()$define] Define config key useragent.
biodb.DEBUG[2024-10-16 23:20:53.425][self$set] Set key useragent to "R Bioconductor biodb library.".
biodb.DEBUG[2024-10-16 23:20:53.427][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-10-16 23:20:53.428][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-10-16 23:20:53.430][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-10-16 23:20:53.432][self$getDbsInfo()$define] Define connector comp.csv.file.
biodb.DEBUG[2024-10-16 23:20:53.436][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2024-10-16 23:20:53.438][self$setPropertyValue] Setting property "description" to "A connector to handle a compound database stored inside a CSV file. It is possible to choose the separator for the CSV file, as well as match the column names with the biodb entry fields.".
biodb.DEBUG[2024-10-16 23:20:53.439][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2024-10-16 23:20:53.441][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2024-10-16 23:20:53.442][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2024-10-16 23:20:53.443][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2024-10-16 23:20:53.444][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2024-10-16 23:20:53.445][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2024-10-16 23:20:53.446][self$setPropertyValue] Setting property "entry.content.type" to "tsv".
biodb.DEBUG[2024-10-16 23:20:53.448][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2024-10-16 23:20:53.449][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2024-10-16 23:20:53.450][self$setPropertyValue] Setting property "name" to "Compound CSV File".
biodb.DEBUG[2024-10-16 23:20:53.451][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2024-10-16 23:20:53.453][self$setPropertyValue]
biodb.DEBUG[2024-10-16 23:20:53.454][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2024-10-16 23:20:53.456][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2024-10-16 23:20:53.456][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2024-10-16 23:20:53.456][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2024-10-16 23:20:53.456][self$setPropertyValue] Setting property "searchable.fields" to "average.mass".
biodb.DEBUG[2024-10-16 23:20:53.456][self$setPropertyValue] Setting property "searchable.fields" to "nominal.mass".
biodb.DEBUG[2024-10-16 23:20:53.457][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2024-10-16 23:20:53.458][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-10-16 23:20:53.459][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-10-16 23:20:53.460][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2024-10-16 23:20:53.462][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-10-16 23:20:53.463][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-10-16 23:20:53.464][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2024-10-16 23:20:53.465][self$setPropertyValue]
biodb.DEBUG[2024-10-16 23:20:53.466][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-10-16 23:20:53.467][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-10-16 23:20:53.468][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2024-10-16 23:20:53.470][self$setPropertyValue]
biodb.DEBUG[2024-10-16 23:20:53.471][self$getDbsInfo()$define] Define connector comp.sqlite.
biodb.DEBUG[2024-10-16 23:20:53.473][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2024-10-16 23:20:53.474][self$setPropertyValue] Setting property "description" to "A connector to handle a compound database stored inside an SQLite file.".
biodb.DEBUG[2024-10-16 23:20:53.475][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2024-10-16 23:20:53.477][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2024-10-16 23:20:53.478][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2024-10-16 23:20:53.479][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2024-10-16 23:20:53.480][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2024-10-16 23:20:53.482][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2024-10-16 23:20:53.483][self$setPropertyValue] Setting property "entry.content.type" to "list".
biodb.DEBUG[2024-10-16 23:20:53.484][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2024-10-16 23:20:53.485][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2024-10-16 23:20:53.486][self$setPropertyValue] Setting property "name" to "Compound SQLite".
biodb.DEBUG[2024-10-16 23:20:53.488][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2024-10-16 23:20:53.489][self$setPropertyValue]
biodb.DEBUG[2024-10-16 23:20:53.490][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2024-10-16 23:20:53.491][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2024-10-16 23:20:53.491][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2024-10-16 23:20:53.491][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2024-10-16 23:20:53.491][self$setPropertyValue] Setting property "searchable.fields" to "average.mass".
biodb.DEBUG[2024-10-16 23:20:53.491][self$setPropertyValue] Setting property "searchable.fields" to "nominal.mass".
biodb.DEBUG[2024-10-16 23:20:53.492][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2024-10-16 23:20:53.494][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-10-16 23:20:53.495][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-10-16 23:20:53.496][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2024-10-16 23:20:53.497][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-10-16 23:20:53.498][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-10-16 23:20:53.499][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2024-10-16 23:20:53.500][self$setPropertyValue]
biodb.DEBUG[2024-10-16 23:20:53.502][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-10-16 23:20:53.503][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-10-16 23:20:53.504][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2024-10-16 23:20:53.505][self$setPropertyValue]
biodb.DEBUG[2024-10-16 23:20:53.506][self$getDbsInfo()$define] Define connector mass.csv.file.
biodb.DEBUG[2024-10-16 23:20:53.508][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2024-10-16 23:20:53.510][self$setPropertyValue] Setting property "description" to "A connector to handle a mass spectra database stored inside a CSV file. It is possible to choose the separator for the CSV file, as well as match the column names with the biodb entry fields..".
biodb.DEBUG[2024-10-16 23:20:53.511][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2024-10-16 23:20:53.512][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2024-10-16 23:20:53.513][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2024-10-16 23:20:53.514][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2024-10-16 23:20:53.516][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2024-10-16 23:20:53.517][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2024-10-16 23:20:53.518][self$setPropertyValue] Setting property "entry.content.type" to "tsv".
biodb.DEBUG[2024-10-16 23:20:53.519][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2024-10-16 23:20:53.521][self$setPropertyValue] Setting property "mass.db" to "TRUE".
biodb.DEBUG[2024-10-16 23:20:53.522][self$setPropertyValue] Setting property "name" to "Mass spectra CSV File".
biodb.DEBUG[2024-10-16 23:20:53.523][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2024-10-16 23:20:53.524][self$setPropertyValue]
biodb.DEBUG[2024-10-16 23:20:53.525][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2024-10-16 23:20:53.526][self$setPropertyValue]
biodb.DEBUG[2024-10-16 23:20:53.528][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2024-10-16 23:20:53.529][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-10-16 23:20:53.530][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-10-16 23:20:53.531][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2024-10-16 23:20:53.532][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-10-16 23:20:53.533][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-10-16 23:20:53.535][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2024-10-16 23:20:53.536][self$setPropertyValue]
biodb.DEBUG[2024-10-16 23:20:53.537][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-10-16 23:20:53.538][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-10-16 23:20:53.539][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2024-10-16 23:20:53.540][self$setPropertyValue]
biodb.DEBUG[2024-10-16 23:20:53.542][self$getDbsInfo()$define] Define connector mass.sqlite.
biodb.DEBUG[2024-10-16 23:20:53.544][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2024-10-16 23:20:53.545][self$setPropertyValue] Setting property "description" to "A connector to handle a mass spectra database stored inside an SQLite file.".
biodb.DEBUG[2024-10-16 23:20:53.546][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2024-10-16 23:20:53.547][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2024-10-16 23:20:53.549][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2024-10-16 23:20:53.550][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2024-10-16 23:20:53.551][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2024-10-16 23:20:53.552][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2024-10-16 23:20:53.553][self$setPropertyValue] Setting property "entry.content.type" to "list".
biodb.DEBUG[2024-10-16 23:20:53.555][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2024-10-16 23:20:53.556][self$setPropertyValue] Setting property "mass.db" to "TRUE".
biodb.DEBUG[2024-10-16 23:20:53.557][self$setPropertyValue] Setting property "name" to "Mass spectra SQLite".
biodb.DEBUG[2024-10-16 23:20:53.558][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2024-10-16 23:20:53.559][self$setPropertyValue]
biodb.DEBUG[2024-10-16 23:20:53.561][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2024-10-16 23:20:53.562][self$setPropertyValue]
biodb.DEBUG[2024-10-16 23:20:53.563][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2024-10-16 23:20:53.564][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-10-16 23:20:53.565][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-10-16 23:20:53.566][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2024-10-16 23:20:53.568][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-10-16 23:20:53.569][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-10-16 23:20:53.570][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2024-10-16 23:20:53.571][self$setPropertyValue]
biodb.DEBUG[2024-10-16 23:20:53.572][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-10-16 23:20:53.573][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-10-16 23:20:53.574][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2024-10-16 23:20:53.576][self$setPropertyValue]
biodb.DEBUG[2024-10-16 23:20:53.577][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2024-10-16 23:20:53.578][FUN] Trying to call function notifyNewObservers on observer BiodbConfig.
biodb.DEBUG[2024-10-16 23:20:53.579][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-10-16 23:20:53.580][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-10-16 23:20:53.582][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-10-16 23:20:53.583][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-10-16 23:20:53.584][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-10-16 23:20:53.585][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-10-16 23:20:53.586][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-10-16 23:20:53.587][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-10-16 23:20:53.588][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-10-16 23:20:53.589][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-10-16 23:20:53.590][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-10-16 23:20:53.591][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-10-16 23:20:53.592][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-10-16 23:20:53.594][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-10-16 23:20:53.595][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-10-16 23:20:53.596][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-10-16 23:20:53.597][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-10-16 23:20:53.598][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-10-16 23:20:53.599][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-10-16 23:20:53.600][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-10-16 23:20:53.601][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-10-16 23:20:53.602][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-10-16 23:20:53.603][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-10-16 23:20:53.604][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-10-16 23:20:53.605][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-10-16 23:20:53.607][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-10-16 23:20:53.608][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-10-16 23:20:53.609][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-10-16 23:20:53.610][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-10-16 23:20:53.611][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-10-16 23:20:53.612][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-10-16 23:20:53.613][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-10-16 23:20:53.614][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-10-16 23:20:53.615][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-10-16 23:20:53.616][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-10-16 23:20:53.617][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-10-16 23:20:53.619][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-10-16 23:20:53.620][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-10-16 23:20:53.621][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-10-16 23:20:53.622][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-10-16 23:20:53.623][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-10-16 23:20:53.624][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-10-16 23:20:53.625][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-10-16 23:20:53.626][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-10-16 23:20:53.627][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-10-16 23:20:53.628][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-10-16 23:20:53.630][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-10-16 23:20:53.631][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-10-16 23:20:53.632][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-10-16 23:20:53.633][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-10-16 23:20:53.634][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-10-16 23:20:53.635][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-10-16 23:20:53.636][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-10-16 23:20:53.637][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-10-16 23:20:53.638][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-10-16 23:20:53.639][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-10-16 23:20:53.641][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-10-16 23:20:53.642][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-10-16 23:20:53.643][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-10-16 23:20:53.650][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-10-16 23:20:53.651][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-10-16 23:20:53.652][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-10-16 23:20:53.653][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-10-16 23:20:53.654][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-10-16 23:20:53.655][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-10-16 23:20:53.656][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-10-16 23:20:53.657][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-10-16 23:20:53.658][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-10-16 23:20:53.659][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-10-16 23:20:53.661][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-10-16 23:20:53.662][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-10-16 23:20:53.663][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-10-16 23:20:53.664][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-10-16 23:20:53.665][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-10-16 23:20:53.666][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-10-16 23:20:53.667][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-10-16 23:20:53.668][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-10-16 23:20:53.669][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-10-16 23:20:53.670][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-10-16 23:20:53.671][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-10-16 23:20:53.672][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-10-16 23:20:53.673][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-10-16 23:20:53.674][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-10-16 23:20:53.675][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-10-16 23:20:53.677][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-10-16 23:20:53.678][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-10-16 23:20:53.679][self$getEntryFields()$define] Define field accession.
biodb.DEBUG[2024-10-16 23:20:53.680][self$getEntryFields()$define] Define field description.
biodb.DEBUG[2024-10-16 23:20:53.682][self$getEntryFields()$define] Define field name.
biodb.DEBUG[2024-10-16 23:20:53.684][self$getEntryFields()$define] Define field cas.id.
biodb.DEBUG[2024-10-16 23:20:53.685][self$getEntryFields()$define] Define field chebi.id.
biodb.DEBUG[2024-10-16 23:20:53.687][self$getEntryFields()$define] Define field chemspider.id.
biodb.DEBUG[2024-10-16 23:20:53.688][self$getEntryFields()$define] Define field comp.csv.file.id.
biodb.DEBUG[2024-10-16 23:20:53.690][self$getEntryFields()$define] Define field comp.sqlite.id.
biodb.DEBUG[2024-10-16 23:20:53.691][self$getEntryFields()$define] Define field expasy.enzyme.id.
biodb.DEBUG[2024-10-16 23:20:53.693][self$getEntryFields()$define] Define field hmdb.metabolites.id.
biodb.DEBUG[2024-10-16 23:20:53.694][self$getEntryFields()$define] Define field kegg.compound.id.
biodb.DEBUG[2024-10-16 23:20:53.696][self$getEntryFields()$define] Define field kegg.genes.id.
biodb.DEBUG[2024-10-16 23:20:53.697][self$getEntryFields()$define] Define field mass.csv.file.id.
biodb.DEBUG[2024-10-16 23:20:53.699][self$getEntryFields()$define] Define field mass.sqlite.id.
biodb.DEBUG[2024-10-16 23:20:53.700][self$getEntryFields()$define] Define field ncbi.gene.id.
biodb.DEBUG[2024-10-16 23:20:53.702][self$getEntryFields()$define] Define field ncbi.pubchem.comp.id.
biodb.DEBUG[2024-10-16 23:20:53.703][self$getEntryFields()$define] Define field compound.id.
biodb.DEBUG[2024-10-16 23:20:53.705][self$getEntryFields()$define] Define field average.mass.
biodb.DEBUG[2024-10-16 23:20:53.707][self$getEntryFields()$define] Define field molecular.mass.
biodb.DEBUG[2024-10-16 23:20:53.708][self$getEntryFields()$define] Define field monoisotopic.mass.
biodb.DEBUG[2024-10-16 23:20:53.710][self$getEntryFields()$define] Define field nominal.mass.
biodb.DEBUG[2024-10-16 23:20:53.711][self$getEntryFields()$define] Define field peak.attr.
biodb.DEBUG[2024-10-16 23:20:53.713][self$getEntryFields()$define] Define field peak.comp.
biodb.DEBUG[2024-10-16 23:20:53.715][self$getEntryFields()$define] Define field peak.error.ppm.
biodb.DEBUG[2024-10-16 23:20:53.717][self$getEntryFields()$define] Define field peak.formula.
biodb.DEBUG[2024-10-16 23:20:53.720][self$getEntryFields()$define] Define field peak.intensity.
biodb.DEBUG[2024-10-16 23:20:53.722][self$getEntryFields()$define] Define field peak.mass.
biodb.DEBUG[2024-10-16 23:20:53.724][self$getEntryFields()$define] Define field peak.mztheo.
biodb.DEBUG[2024-10-16 23:20:53.726][self$getEntryFields()$define] Define field peak.mzexp.
biodb.DEBUG[2024-10-16 23:20:53.727][self$getEntryFields()$define] Define field peak.mz.
biodb.DEBUG[2024-10-16 23:20:53.729][self$getEntryFields()$define] Define field peak.relative.intensity.
biodb.DEBUG[2024-10-16 23:20:53.730][self$getEntryFields()$define] Define field peaks.
biodb.DEBUG[2024-10-16 23:20:53.732][self$getEntryFields()$define] Define field chrom.col.constructor.
biodb.DEBUG[2024-10-16 23:20:53.733][self$getEntryFields()$define] Define field chrom.col.diameter.
biodb.DEBUG[2024-10-16 23:20:53.735][self$getEntryFields()$define] Define field chrom.col.id.
biodb.DEBUG[2024-10-16 23:20:53.737][self$getEntryFields()$define] Define field chrom.col.length.
biodb.DEBUG[2024-10-16 23:20:53.738][self$getEntryFields()$define] Define field chrom.col.method.protocol.
biodb.DEBUG[2024-10-16 23:20:53.740][self$getEntryFields()$define] Define field chrom.col.name.
biodb.DEBUG[2024-10-16 23:20:53.741][self$getEntryFields()$define] Define field chrom.flow.gradient.
biodb.DEBUG[2024-10-16 23:20:53.743][self$getEntryFields()$define] Define field chrom.flow.rate.
biodb.DEBUG[2024-10-16 23:20:53.744][self$getEntryFields()$define] Define field chrom.rt.
biodb.DEBUG[2024-10-16 23:20:53.746][self$getEntryFields()$define] Define field chrom.rt.max.
biodb.DEBUG[2024-10-16 23:20:53.747][self$getEntryFields()$define] Define field chrom.rt.min.
biodb.DEBUG[2024-10-16 23:20:53.749][self$getEntryFields()$define] Define field chrom.rt.unit.
biodb.DEBUG[2024-10-16 23:20:53.750][self$getEntryFields()$define] Define field chrom.solvent.
biodb.DEBUG[2024-10-16 23:20:53.752][self$getEntryFields()$define] Define field aa.seq.
biodb.DEBUG[2024-10-16 23:20:53.753][self$getEntryFields()$define] Define field aa.seq.length.
biodb.DEBUG[2024-10-16 23:20:53.755][self$getEntryFields()$define] Define field aa.seq.location.
biodb.DEBUG[2024-10-16 23:20:53.756][self$getEntryFields()$define] Define field nt.seq.
biodb.DEBUG[2024-10-16 23:20:53.758][self$getEntryFields()$define] Define field nt.seq.length.
biodb.DEBUG[2024-10-16 23:20:53.760][self$getEntryFields()$define] Define field ec.
biodb.DEBUG[2024-10-16 23:20:53.761][self$getEntryFields()$define] Define field organism.
biodb.DEBUG[2024-10-16 23:20:53.763][self$getEntryFields()$define] Define field pathway.class.
biodb.DEBUG[2024-10-16 23:20:53.764][self$getEntryFields()$define] Define field catalytic.activity.
biodb.DEBUG[2024-10-16 23:20:53.766][self$getEntryFields()$define] Define field cofactor.
biodb.DEBUG[2024-10-16 23:20:53.767][self$getEntryFields()$define] Define field gene.symbol.
biodb.DEBUG[2024-10-16 23:20:53.769][self$getEntryFields()$define] Define field charge.
biodb.DEBUG[2024-10-16 23:20:53.770][self$getEntryFields()$define] Define field comp.iupac.name.allowed.
biodb.DEBUG[2024-10-16 23:20:53.772][self$getEntryFields()$define] Define field comp.iupac.name.cas.
biodb.DEBUG[2024-10-16 23:20:53.773][self$getEntryFields()$define] Define field comp.iupac.name.pref.
biodb.DEBUG[2024-10-16 23:20:53.775][self$getEntryFields()$define] Define field comp.iupac.name.syst.
biodb.DEBUG[2024-10-16 23:20:53.776][self$getEntryFields()$define] Define field comp.iupac.name.trad.
biodb.DEBUG[2024-10-16 23:20:53.778][self$getEntryFields()$define] Define field comp.super.class.
biodb.DEBUG[2024-10-16 23:20:53.780][self$getEntryFields()$define] Define field equation.
biodb.DEBUG[2024-10-16 23:20:53.781][self$getEntryFields()$define] Define field formula.
biodb.DEBUG[2024-10-16 23:20:53.783][self$getEntryFields()$define] Define field composition.
biodb.DEBUG[2024-10-16 23:20:53.784][self$getEntryFields()$define] Define field inchi.
biodb.DEBUG[2024-10-16 23:20:53.786][self$getEntryFields()$define] Define field inchikey.
biodb.DEBUG[2024-10-16 23:20:53.787][self$getEntryFields()$define] Define field logp.
biodb.DEBUG[2024-10-16 23:20:53.789][self$getEntryFields()$define] Define field ms.level.
biodb.DEBUG[2024-10-16 23:20:53.790][self$getEntryFields()$define] Define field ms.mode.
biodb.DEBUG[2024-10-16 23:20:53.792][self$getEntryFields()$define] Define field msdev.
biodb.DEBUG[2024-10-16 23:20:53.793][self$getEntryFields()$define] Define field msdevtype.
biodb.DEBUG[2024-10-16 23:20:53.795][self$getEntryFields()$define] Define field msprecannot.
biodb.DEBUG[2024-10-16 23:20:53.796][self$getEntryFields()$define] Define field msprecmz.
biodb.DEBUG[2024-10-16 23:20:53.798][self$getEntryFields()$define] Define field mstype.
biodb.DEBUG[2024-10-16 23:20:53.800][self$getEntryFields()$define] Define field nb.compounds.
biodb.DEBUG[2024-10-16 23:20:53.801][self$getEntryFields()$define] Define field nb.peaks.
biodb.DEBUG[2024-10-16 23:20:53.803][self$getEntryFields()$define] Define field products.
biodb.DEBUG[2024-10-16 23:20:53.804][self$getEntryFields()$define] Define field smiles.
biodb.DEBUG[2024-10-16 23:20:53.806][self$getEntryFields()$define] Define field smiles.canonical.
biodb.DEBUG[2024-10-16 23:20:53.807][self$getEntryFields()$define] Define field smiles.isomeric.
biodb.DEBUG[2024-10-16 23:20:53.809][self$getEntryFields()$define] Define field substrates.
biodb.DEBUG[2024-10-16 23:20:53.811][initialize] Created successfully new BiodbMain instance.
biodb.DEBUG[2024-10-16 23:20:53.813][initialize] This is biodb version 1.12.0.
biodb.DEBUG[2024-10-16 23:20:53.814][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2024-10-16 23:20:53.815][FUN] Trying to call function notifyNewObservers on observer BiodbEntryFields.
biodb.DEBUG[2024-10-16 23:20:53.816][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-10-16 23:20:53.817][FUN] Trying to call function notifyNewObservers on observer BiodbConfig.
biodb.DEBUG[2024-10-16 23:20:53.818][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-10-16 23:20:53.819][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-10-16 23:20:53.820][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-10-16 23:20:53.821][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-10-16 23:20:53.822][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-10-16 23:20:53.823][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-10-16 23:20:53.825][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-10-16 23:20:53.826][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-10-16 23:20:53.827][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-10-16 23:20:53.828][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-10-16 23:20:53.829][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-10-16 23:20:53.830][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-10-16 23:20:53.831][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-10-16 23:20:53.832][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-10-16 23:20:53.833][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-10-16 23:20:53.834][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-10-16 23:20:53.835][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-10-16 23:20:53.836][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-10-16 23:20:53.838][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-10-16 23:20:53.839][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-10-16 23:20:53.840][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-10-16 23:20:53.841][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-10-16 23:20:53.842][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-10-16 23:20:53.843][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-10-16 23:20:53.844][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-10-16 23:20:53.845][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-10-16 23:20:53.846][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-10-16 23:20:53.848][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-10-16 23:20:53.849][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-10-16 23:20:53.850][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-10-16 23:20:53.851][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-10-16 23:20:53.852][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-10-16 23:20:53.853][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-10-16 23:20:53.854][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-10-16 23:20:53.855][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-10-16 23:20:53.856][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-10-16 23:20:53.858][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-10-16 23:20:53.859][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-10-16 23:20:53.860][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-10-16 23:20:53.861][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-10-16 23:20:53.862][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-10-16 23:20:53.863][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-10-16 23:20:53.864][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-10-16 23:20:53.865][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-10-16 23:20:53.866][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-10-16 23:20:53.867][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-10-16 23:20:53.868][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-10-16 23:20:53.869][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-10-16 23:20:53.870][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-10-16 23:20:53.871][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-10-16 23:20:53.872][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-10-16 23:20:53.873][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-10-16 23:20:53.874][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-10-16 23:20:53.875][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-10-16 23:20:53.876][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-10-16 23:20:53.878][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-10-16 23:20:53.879][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-10-16 23:20:53.880][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-10-16 23:20:53.881][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-10-16 23:20:53.882][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-10-16 23:20:53.883][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-10-16 23:20:53.884][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-10-16 23:20:53.885][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-10-16 23:20:53.886][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-10-16 23:20:53.887][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-10-16 23:20:53.888][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-10-16 23:20:53.889][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-10-16 23:20:53.890][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-10-16 23:20:53.891][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-10-16 23:20:53.892][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-10-16 23:20:53.893][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-10-16 23:20:53.894][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-10-16 23:20:53.895][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-10-16 23:20:53.896][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-10-16 23:20:53.897][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-10-16 23:20:53.898][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-10-16 23:20:53.900][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-10-16 23:20:53.901][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-10-16 23:20:53.902][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-10-16 23:20:53.903][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-10-16 23:20:53.904][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-10-16 23:20:53.905][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-10-16 23:20:53.906][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-10-16 23:20:53.907][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-10-16 23:20:53.908][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-10-16 23:20:53.909][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-10-16 23:20:53.910][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-10-16 23:20:53.911][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-10-16 23:20:53.912][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-10-16 23:20:53.913][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-10-16 23:20:53.914][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-10-16 23:20:53.915][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-10-16 23:20:53.916][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-10-16 23:20:53.917][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-10-16 23:20:53.918][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-10-16 23:20:53.919][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-10-16 23:20:53.920][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-10-16 23:20:53.921][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-10-16 23:20:53.922][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-10-16 23:20:53.923][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-10-16 23:20:53.925][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-10-16 23:20:53.926][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-10-16 23:20:53.927][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-10-16 23:20:53.928][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-10-16 23:20:53.929][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-10-16 23:20:53.930][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-10-16 23:20:53.931][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-10-16 23:20:53.932][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-10-16 23:20:53.933][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-10-16 23:20:53.934][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-10-16 23:20:53.935][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-10-16 23:20:53.936][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-10-16 23:20:53.937][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-10-16 23:20:53.938][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-10-16 23:20:53.939][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-10-16 23:20:53.940][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-10-16 23:20:53.941][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-10-16 23:20:53.942][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-10-16 23:20:53.943][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-10-16 23:20:53.944][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-10-16 23:20:53.947][biodb$loadDefinitions] Load definitions from file "E:/biocbuild/bbs-3.19-bioc/R/library/biodbChebi/definitions.yml".
biodb.DEBUG[2024-10-16 23:20:53.949][self$getDbsInfo()$define] Define connector chebi.
biodb.DEBUG[2024-10-16 23:20:53.951][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2024-10-16 23:20:53.952][self$setPropertyValue] Setting property "description" to "NA".
biodb.DEBUG[2024-10-16 23:20:53.953][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2024-10-16 23:20:53.955][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2024-10-16 23:20:53.956][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2024-10-16 23:20:53.957][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2024-10-16 23:20:53.958][self$setPropertyValue] Setting property "editable" to "FALSE".
biodb.DEBUG[2024-10-16 23:20:53.959][self$setPropertyValue] Setting property "entry.content.encoding" to "UTF-8".
biodb.DEBUG[2024-10-16 23:20:53.960][self$setPropertyValue] Setting property "entry.content.type" to "xml".
biodb.DEBUG[2024-10-16 23:20:53.962][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2024-10-16 23:20:53.963][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2024-10-16 23:20:53.964][self$setPropertyValue] Setting property "name" to "ChEBI".
biodb.DEBUG[2024-10-16 23:20:53.965][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2024-10-16 23:20:53.966][self$setPropertyValue] Setting property "parsing.expr" to "substring-after(//chebi:return/chebi:chebiId,'CHEBI:')".
biodb.DEBUG[2024-10-16 23:20:53.966][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:charge".
biodb.DEBUG[2024-10-16 23:20:53.966][self$setPropertyValue] Setting property "parsing.expr" to "c("//chebi:Formulae/chebi:source[text()='ChEBI']/../chebi:data", "(//chebi:Formulae/chebi:data)[1]")".
biodb.DEBUG[2024-10-16 23:20:53.966][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:return/chebi:inchi".
biodb.DEBUG[2024-10-16 23:20:53.966][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:return/chebi:inchiKey".
biodb.DEBUG[2024-10-16 23:20:53.966][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:DatabaseLinks/chebi:type[text()='KEGG COMPOUND accession']/../chebi:data".
biodb.DEBUG[2024-10-16 23:20:53.966][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:mass".
biodb.DEBUG[2024-10-16 23:20:53.966][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:monoisotopicMass".
biodb.DEBUG[2024-10-16 23:20:53.966][self$setPropertyValue] Setting property "parsing.expr" to "c("//chebi:chebiAsciiName", "//chebi:Synonyms/chebi:data")".
biodb.DEBUG[2024-10-16 23:20:53.966][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:return/chebi:entityStar".
biodb.DEBUG[2024-10-16 23:20:53.966][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:return/chebi:smiles".
biodb.DEBUG[2024-10-16 23:20:53.968][self$setPropertyValue] Setting property "remote" to "TRUE".
biodb.DEBUG[2024-10-16 23:20:53.969][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2024-10-16 23:20:53.969][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2024-10-16 23:20:53.969][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2024-10-16 23:20:53.970][self$setPropertyValue] Setting property "scheduler.n" to "3".
biodb.DEBUG[2024-10-16 23:20:53.971][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-10-16 23:20:53.972][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-10-16 23:20:53.973][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2024-10-16 23:20:53.975][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-10-16 23:20:53.976][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-10-16 23:20:53.977][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2024-10-16 23:20:53.978][self$setPropertyValue] Setting property "urls" to "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2024-10-16 23:20:53.978][self$setPropertyValue] Setting property "urls" to "https://www.ebi.ac.uk/webservices/chebi/2.0/".
biodb.DEBUG[2024-10-16 23:20:53.979][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-10-16 23:20:53.980][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-10-16 23:20:53.981][self$setPropertyValue] Setting property "writable" to "FALSE".
biodb.DEBUG[2024-10-16 23:20:53.982][self$setPropertyValue] Setting property "xml.ns" to "https://www.ebi.ac.uk/webservices/chebi".
biodb.DEBUG[2024-10-16 23:20:53.982][self$setPropertyValue] Setting property "xml.ns" to "http://www.w3.org/2001/XMLSchema".
biodb.DEBUG[2024-10-16 23:20:53.984][self$getEntryFields()$define] Define field chebi.id.
biodb.DEBUG[2024-10-16 23:20:53.986][self$getEntryFields()$define] Define field kegg.compound.id.
biodb.DEBUG[2024-10-16 23:20:53.987][self$getEntryFields()$define] Define field n_stars.
biodb.DEBUG[2024-10-16 23:20:53.989][self$getEntryFields()$define] Define field molecular.mass.
biodb.DEBUG[2024-10-16 23:20:53.991][self$getEntryFields()$define] Define field inchi.
biodb.DEBUG[2024-10-16 23:20:53.992][self$getEntryFields()$define] Define field inchikey.
biodb.DEBUG[2024-10-16 23:20:53.996][super$initialize] Initialize connector chebi.
biodb.DEBUG[2024-10-16 23:20:53.997][super$initialize] Register connector chebi with the request scheduler
biodb.DEBUG[2024-10-16 23:20:53.998][private$bdb$getRequestScheduler()$re ...] Register connector chebi.
biodb.DEBUG[2024-10-16 23:20:54.000][private$addConnectorRules] Create new rule for URL "www.ebi.ac.uk" of connector "chebi".
biodb.DEBUG[2024-10-16 23:20:54.001][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2024-10-16 23:20:54.003][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2024-10-16 23:20:54.004][rule$addConnector] Connector "chebi" is already listed in rule "www.ebi.ac.uk".
biodb.DEBUG[2024-10-16 23:20:54.005][biodb$getFactory()$createConn] Creating new connector chebi for database class chebi .
biodb.INFO [2024-10-16 23:20:54.007][biodb::testThat]
biodb.INFO [2024-10-16 23:20:54.008][biodb::testThat] Running test function  test_chebi_convCasToChebi  (" convCasToChebi() works. ").
biodb.INFO [2024-10-16 23:20:54.009][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-10-16 23:20:54.011][biodb::testThat]
biodb.DEBUG[2024-10-16 23:20:54.015][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/webservice?wsdl".
biodb.DEBUG[2024-10-16 23:20:54.019][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-10-16 23:20:54.021][cch$loadFileContent] Trying to load 1 files from cache: [1]: "1ad88a023c4ce2bc0629db4acebeee05".
biodb.TRACE[2024-10-16 23:20:54.022][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-10-16 23:20:54.026][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/1ad88a023c4ce2bc0629db4acebeee05.content".
biodb.DEBUG[2024-10-16 23:20:54.030][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=51-41-2&searchCategory=REGISTRY NUMBERS&maximumResults=10&starsCategory=ALL".
biodb.DEBUG[2024-10-16 23:20:54.034][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-10-16 23:20:54.035][cch$loadFileContent] Trying to load 1 files from cache: [1]: "0e2b277bfac878e1dcf7dc3f91acb8d3".
biodb.TRACE[2024-10-16 23:20:54.037][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-10-16 23:20:54.057][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/0e2b277bfac878e1dcf7dc3f91acb8d3.content".
biodb.DEBUG[2024-10-16 23:20:54.059][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-10-16 23:20:54.060][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-10-16 23:20:54.061][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-10-16 23:20:54.667][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-10-16 23:20:54.668][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-10-16 23:20:54.670][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-10-16 23:20:54.671][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-10-16 23:20:54.674][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=87605-72-9&searchCategory=REGISTRY NUMBERS&maximumResults=10&starsCategory=ALL".
biodb.DEBUG[2024-10-16 23:20:54.682][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-10-16 23:20:54.685][cch$loadFileContent] Trying to load 1 files from cache: [1]: "b767b3e02c49727a1749efea3e381744".
biodb.TRACE[2024-10-16 23:20:54.688][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-10-16 23:20:54.735][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/b767b3e02c49727a1749efea3e381744.content".
biodb.DEBUG[2024-10-16 23:20:54.739][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-10-16 23:20:54.740][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-10-16 23:20:54.747][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-10-16 23:20:54.759][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-10-16 23:20:54.761][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-10-16 23:20:54.764][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-10-16 23:20:54.766][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-10-16 23:20:54.791][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-10-16 23:20:54.793][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-10-16 23:20:54.794][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-10-16 23:20:54.804][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-10-16 23:20:54.805][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-10-16 23:20:54.807][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-10-16 23:20:54.808][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-10-16 23:20:54.813][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=51-41-2&searchCategory=REGISTRY NUMBERS&maximumResults=10&starsCategory=ALL".
biodb.DEBUG[2024-10-16 23:20:54.816][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-10-16 23:20:54.818][cch$loadFileContent] Trying to load 1 files from cache: [1]: "0e2b277bfac878e1dcf7dc3f91acb8d3".
biodb.TRACE[2024-10-16 23:20:54.819][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-10-16 23:20:54.821][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/0e2b277bfac878e1dcf7dc3f91acb8d3.content".
biodb.DEBUG[2024-10-16 23:20:54.823][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-10-16 23:20:54.824][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-10-16 23:20:54.825][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-10-16 23:20:54.832][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-10-16 23:20:54.833][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-10-16 23:20:54.834][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-10-16 23:20:54.835][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-10-16 23:20:54.837][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=87605-72-9&searchCategory=REGISTRY NUMBERS&maximumResults=10&starsCategory=ALL".
biodb.DEBUG[2024-10-16 23:20:54.840][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-10-16 23:20:54.842][cch$loadFileContent] Trying to load 1 files from cache: [1]: "b767b3e02c49727a1749efea3e381744".
biodb.TRACE[2024-10-16 23:20:54.843][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-10-16 23:20:54.845][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/b767b3e02c49727a1749efea3e381744.content".
biodb.DEBUG[2024-10-16 23:20:54.848][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-10-16 23:20:54.849][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-10-16 23:20:54.850][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-10-16 23:20:54.856][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-10-16 23:20:54.857][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-10-16 23:20:54.858][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-10-16 23:20:54.860][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-10-16 23:20:54.861][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-10-16 23:20:54.862][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-10-16 23:20:54.863][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-10-16 23:20:54.869][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-10-16 23:20:54.870][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-10-16 23:20:54.872][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-10-16 23:20:54.873][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-10-16 23:20:54.877][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=51-41-2&searchCategory=REGISTRY NUMBERS&maximumResults=10&starsCategory=ALL".
biodb.DEBUG[2024-10-16 23:20:54.880][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-10-16 23:20:54.882][cch$loadFileContent] Trying to load 1 files from cache: [1]: "0e2b277bfac878e1dcf7dc3f91acb8d3".
biodb.TRACE[2024-10-16 23:20:54.883][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-10-16 23:20:54.885][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/0e2b277bfac878e1dcf7dc3f91acb8d3.content".
biodb.DEBUG[2024-10-16 23:20:54.887][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-10-16 23:20:54.888][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-10-16 23:20:54.889][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-10-16 23:20:56.898][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-10-16 23:20:56.900][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-10-16 23:20:56.902][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-10-16 23:20:56.904][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-10-16 23:20:56.908][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=87605-72-9&searchCategory=REGISTRY NUMBERS&maximumResults=10&starsCategory=ALL".
biodb.DEBUG[2024-10-16 23:20:56.913][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-10-16 23:20:56.916][cch$loadFileContent] Trying to load 1 files from cache: [1]: "b767b3e02c49727a1749efea3e381744".
biodb.TRACE[2024-10-16 23:20:56.918][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-10-16 23:20:56.921][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/b767b3e02c49727a1749efea3e381744.content".
biodb.DEBUG[2024-10-16 23:20:56.924][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-10-16 23:20:56.926][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-10-16 23:20:56.927][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-10-16 23:20:57.225][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-10-16 23:20:57.226][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-10-16 23:20:57.227][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-10-16 23:20:57.229][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-10-16 23:20:57.231][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=14215-68-0&searchCategory=REGISTRY NUMBERS&maximumResults=10&starsCategory=ALL".
biodb.DEBUG[2024-10-16 23:20:57.235][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-10-16 23:20:57.236][cch$loadFileContent] Trying to load 1 files from cache: [1]: "70e3912746e7e39b39fbbffe6c90b502".
biodb.TRACE[2024-10-16 23:20:57.238][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-10-16 23:20:57.250][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/70e3912746e7e39b39fbbffe6c90b502.content".
biodb.DEBUG[2024-10-16 23:20:57.252][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-10-16 23:20:57.253][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-10-16 23:20:57.254][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-10-16 23:20:57.383][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-10-16 23:20:57.385][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-10-16 23:20:57.386][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-10-16 23:20:57.388][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.INFO [2024-10-16 23:20:57.442][biodb::testThat]
biodb.INFO [2024-10-16 23:20:57.444][biodb::testThat] Running test function  test_chebi_convInchiToChebi  (" convInchiToChebi() works. ").
biodb.INFO [2024-10-16 23:20:57.445][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-10-16 23:20:57.446][biodb::testThat]
biodb.DEBUG[2024-10-16 23:20:57.450][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=InChI=1S/C15H24/c1-9(2)11-7-8-15(4)12-6-5-10(3)14(15)13(11)12/h5,9,11-14H,6-8H2,1-4H3/t11?,12?,13?,14?,15-/m0/s1&searchCategory=INCHI/INCHI KEY&maximumResults=10&starsCategory=ALL".
biodb.DEBUG[2024-10-16 23:20:57.454][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-10-16 23:20:57.455][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-10-16 23:20:57.457][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=InChI%3D1S%2FC15H24%2Fc1-9%282%2911-7-8-15%284%2912-6-5-10%283%2914%2815%2913%2811%2912%2Fh5%2C9%2C11-14H%2C6-8H2%2C1-4H3%2Ft11%3F%2C12%3F%2C13%3F%2C14%3F%2C15-%2Fm0%2Fs1&searchCategory=INCHI%2FINCHI%20KEY&maximumResults=10&starsCategory=ALL".
biodb.TRACE[2024-10-16 23:20:57.891][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=InChI%3D1S%2FC15H24%2Fc1-9%282%2911-7-8-15%284%2912-6-5-10%283%2914%2815%2913%2811%2912%2Fh5%2C9%2C11-14H%2C6-8H2%2C1-4H3%2Ft11%3F%2C12%3F%2C13%3F%2C14%3F%2C15-%2Fm0%2Fs1&searchCategory=INCHI%2FINCHI%20KEY&maximumResults=10&starsCategory=ALL).
biodb.DEBUG[2024-10-16 23:20:58.275][self$getBiodb()$getRequestScheduler( ...] Saving content of request to cache.
biodb.TRACE[2024-10-16 23:20:58.278][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/64007787a4f3864bb479683766386808.content"
biodb.TRACE[2024-10-16 23:20:58.283][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/64007787a4f3864bb479683766386808.request"
biodb.DEBUG[2024-10-16 23:20:58.286][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-10-16 23:20:58.288][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-10-16 23:20:58.289][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-10-16 23:21:00.287][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-10-16 23:21:00.289][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-10-16 23:21:00.291][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-10-16 23:21:00.292][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-10-16 23:21:00.296][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=VLXDPFLIRFYIME-MWHZVNNOSA-N&searchCategory=INCHI/INCHI KEY&maximumResults=10&starsCategory=ALL".
biodb.DEBUG[2024-10-16 23:21:00.301][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-10-16 23:21:00.302][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-10-16 23:21:00.306][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=VLXDPFLIRFYIME-MWHZVNNOSA-N&searchCategory=INCHI%2FINCHI%20KEY&maximumResults=10&starsCategory=ALL".
biodb.TRACE[2024-10-16 23:21:00.675][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=VLXDPFLIRFYIME-MWHZVNNOSA-N&searchCategory=INCHI%2FINCHI%20KEY&maximumResults=10&starsCategory=ALL).
biodb.DEBUG[2024-10-16 23:21:01.044][self$getBiodb()$getRequestScheduler( ...] Saving content of request to cache.
biodb.TRACE[2024-10-16 23:21:01.047][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/7547b08b3ebd50447d61026ab0af8d63.content"
biodb.TRACE[2024-10-16 23:21:01.052][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/7547b08b3ebd50447d61026ab0af8d63.request"
biodb.DEBUG[2024-10-16 23:21:01.055][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-10-16 23:21:01.056][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-10-16 23:21:01.057][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-10-16 23:21:01.603][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-10-16 23:21:01.605][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-10-16 23:21:01.606][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-10-16 23:21:01.607][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.INFO [2024-10-16 23:21:01.630][biodb$terminate] Closing BiodbMain instance...
biodb.DEBUG[2024-10-16 23:21:01.631][private$conn[[conn]]$.__enclos_env__ ...] Unregister connector chebi from the request scheduler
biodb.INFO [2024-10-16 23:21:01.633][self$deleteConn] Connector "chebi" deleted.
biodb.DEBUG[2024-10-16 23:21:01.634][notifyObservers] Notify observers for terminate.
biodb.DEBUG[2024-10-16 23:21:01.635][FUN] Trying to call function terminate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-10-16 23:21:01.636][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-10-16 23:21:01.637][FUN] Trying to call function terminate on observer BiodbEntryFields.
biodb.DEBUG[2024-10-16 23:21:01.638][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-10-16 23:21:01.639][FUN] Trying to call function terminate on observer BiodbConfig.
biodb.DEBUG[2024-10-16 23:21:01.640][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.INFO [2024-10-16 23:21:01.711][biodb::testContext]
biodb.INFO [2024-10-16 23:21:01.712][biodb::testContext] ********************************************************************************
biodb.INFO [2024-10-16 23:21:01.714][biodb::testContext] Test context - Test web services
biodb.INFO [2024-10-16 23:21:01.715][biodb::testContext] ********************************************************************************
biodb.INFO [2024-10-16 23:21:01.716][biodb::testContext]
biodb.INFO [2024-10-16 23:21:01.719][private$loadBiodbPkgsDefinitions] Loading definitions from package biodb version 1.12.0.
biodb.DEBUG[2024-10-16 23:21:01.722][self$loadDefinitions] Load definitions from file "E:/biocbuild/bbs-3.19-bioc/R/library/biodb/definitions.yml".
biodb.DEBUG[2024-10-16 23:21:01.727][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2024-10-16 23:21:01.729][self$getConfig()$define] Define config key allow.huge.downloads.
biodb.DEBUG[2024-10-16 23:21:01.730][self$set] Set key allow.huge.downloads to TRUE.
biodb.DEBUG[2024-10-16 23:21:01.732][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-10-16 23:21:01.733][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-10-16 23:21:01.734][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-10-16 23:21:01.735][self$getConfig()$define] Define config key autoload.extra.pkgs.
biodb.DEBUG[2024-10-16 23:21:01.736][self$set] Set key autoload.extra.pkgs to TRUE.
biodb.DEBUG[2024-10-16 23:21:01.737][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-10-16 23:21:01.738][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-10-16 23:21:01.740][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-10-16 23:21:01.741][self$getConfig()$define] Define config key cache.all.requests.
biodb.DEBUG[2024-10-16 23:21:01.742][self$set] Set key cache.all.requests to TRUE.
biodb.DEBUG[2024-10-16 23:21:01.743][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-10-16 23:21:01.744][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-10-16 23:21:01.745][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-10-16 23:21:01.746][self$getConfig()$define] Define config key cache.directory.
biodb.DEBUG[2024-10-16 23:21:01.747][self$getConfig()$define] Define config key cache.read.only.
biodb.DEBUG[2024-10-16 23:21:01.749][self$set] Set key cache.read.only to FALSE.
biodb.DEBUG[2024-10-16 23:21:01.750][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-10-16 23:21:01.751][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-10-16 23:21:01.752][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-10-16 23:21:01.753][self$getConfig()$define] Define config key cache.subfolders.
biodb.DEBUG[2024-10-16 23:21:01.754][self$getConfig()$define] Define config key cache.system.
biodb.DEBUG[2024-10-16 23:21:01.755][self$set] Set key cache.system to TRUE.
biodb.DEBUG[2024-10-16 23:21:01.756][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-10-16 23:21:01.757][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-10-16 23:21:01.758][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-10-16 23:21:01.760][self$getConfig()$define] Define config key use.cache.for.local.db.
biodb.DEBUG[2024-10-16 23:21:01.761][self$set] Set key use.cache.for.local.db to FALSE.
biodb.DEBUG[2024-10-16 23:21:01.762][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-10-16 23:21:01.763][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-10-16 23:21:01.764][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-10-16 23:21:01.765][self$getConfig()$define] Define config key dwnld.chunk.size.
biodb.DEBUG[2024-10-16 23:21:01.766][self$getConfig()$define] Define config key dwnld.timeout.
biodb.DEBUG[2024-10-16 23:21:01.768][self$set] Set key dwnld.timeout to 3600.
biodb.DEBUG[2024-10-16 23:21:01.769][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-10-16 23:21:01.770][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-10-16 23:21:01.771][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-10-16 23:21:01.772][self$getConfig()$define] Define config key compute.fields.
biodb.DEBUG[2024-10-16 23:21:01.773][self$set] Set key compute.fields to TRUE.
biodb.DEBUG[2024-10-16 23:21:01.774][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-10-16 23:21:01.775][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-10-16 23:21:01.776][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-10-16 23:21:01.777][self$getConfig()$define] Define config key factory.cache.
biodb.DEBUG[2024-10-16 23:21:01.778][self$getConfig()$define] Define config key force.locale.
biodb.DEBUG[2024-10-16 23:21:01.780][self$set] Set key force.locale to TRUE.
biodb.DEBUG[2024-10-16 23:21:01.781][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-10-16 23:21:01.782][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-10-16 23:21:01.783][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-10-16 23:21:01.784][self$getConfig()$define] Define config key longterm.cache.subfolder.
biodb.DEBUG[2024-10-16 23:21:01.785][self$getConfig()$define] Define config key msg.caution.lvl.
biodb.DEBUG[2024-10-16 23:21:01.786][self$getConfig()$define] Define config key msg.debug.lvl.
biodb.DEBUG[2024-10-16 23:21:01.788][self$getConfig()$define] Define config key msg.info.lvl.
biodb.DEBUG[2024-10-16 23:21:01.789][self$getConfig()$define] Define config key multival.field.sep.
biodb.DEBUG[2024-10-16 23:21:01.790][self$set] Set key multival.field.sep to ";".
biodb.DEBUG[2024-10-16 23:21:01.791][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-10-16 23:21:01.792][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-10-16 23:21:01.793][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-10-16 23:21:01.794][self$getConfig()$define] Define config key intra.field.name.sep.
biodb.DEBUG[2024-10-16 23:21:01.795][self$set] Set key intra.field.name.sep to ".".
biodb.DEBUG[2024-10-16 23:21:01.797][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-10-16 23:21:01.798][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-10-16 23:21:01.799][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-10-16 23:21:01.800][self$getConfig()$define] Define config key entries.sep.
biodb.DEBUG[2024-10-16 23:21:01.801][self$set] Set key entries.sep to "|".
biodb.DEBUG[2024-10-16 23:21:01.802][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-10-16 23:21:01.803][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-10-16 23:21:01.805][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-10-16 23:21:01.806][self$getConfig()$define] Define config key offline.
biodb.DEBUG[2024-10-16 23:21:01.807][self$set] Set key offline to FALSE.
biodb.DEBUG[2024-10-16 23:21:01.808][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-10-16 23:21:01.809][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-10-16 23:21:01.810][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-10-16 23:21:01.811][self$getConfig()$define] Define config key persistent.cache.impl.
biodb.DEBUG[2024-10-16 23:21:01.813][self$set] Set key persistent.cache.impl to "custom".
biodb.DEBUG[2024-10-16 23:21:01.814][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-10-16 23:21:01.815][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-10-16 23:21:01.816][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-10-16 23:21:01.817][self$getConfig()$define] Define config key proton.mass.
biodb.DEBUG[2024-10-16 23:21:01.818][self$set] Set key proton.mass to 1.0072765.
biodb.DEBUG[2024-10-16 23:21:01.819][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-10-16 23:21:01.829][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-10-16 23:21:01.830][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-10-16 23:21:01.831][self$getConfig()$define] Define config key shortterm.cache.subfolder.
biodb.DEBUG[2024-10-16 23:21:01.832][self$getConfig()$define] Define config key svn.binary.path.
biodb.DEBUG[2024-10-16 23:21:01.835][self$set] Set key svn.binary.path to "".
biodb.DEBUG[2024-10-16 23:21:01.836][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-10-16 23:21:01.837][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-10-16 23:21:01.838][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-10-16 23:21:01.840][self$getConfig()$define] Define config key test.functions.
biodb.DEBUG[2024-10-16 23:21:01.841][self$getConfig()$define] Define config key useragent.
biodb.DEBUG[2024-10-16 23:21:01.842][self$set] Set key useragent to "R Bioconductor biodb library.".
biodb.DEBUG[2024-10-16 23:21:01.843][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-10-16 23:21:01.844][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-10-16 23:21:01.845][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-10-16 23:21:01.847][self$getDbsInfo()$define] Define connector comp.csv.file.
biodb.DEBUG[2024-10-16 23:21:01.848][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2024-10-16 23:21:01.850][self$setPropertyValue] Setting property "description" to "A connector to handle a compound database stored inside a CSV file. It is possible to choose the separator for the CSV file, as well as match the column names with the biodb entry fields.".
biodb.DEBUG[2024-10-16 23:21:01.851][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2024-10-16 23:21:01.852][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2024-10-16 23:21:01.853][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2024-10-16 23:21:01.854][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2024-10-16 23:21:01.855][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2024-10-16 23:21:01.857][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2024-10-16 23:21:01.858][self$setPropertyValue] Setting property "entry.content.type" to "tsv".
biodb.DEBUG[2024-10-16 23:21:01.859][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2024-10-16 23:21:01.860][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2024-10-16 23:21:01.861][self$setPropertyValue] Setting property "name" to "Compound CSV File".
biodb.DEBUG[2024-10-16 23:21:01.862][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2024-10-16 23:21:01.864][self$setPropertyValue]
biodb.DEBUG[2024-10-16 23:21:01.865][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2024-10-16 23:21:01.866][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2024-10-16 23:21:01.866][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2024-10-16 23:21:01.866][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2024-10-16 23:21:01.866][self$setPropertyValue] Setting property "searchable.fields" to "average.mass".
biodb.DEBUG[2024-10-16 23:21:01.866][self$setPropertyValue] Setting property "searchable.fields" to "nominal.mass".
biodb.DEBUG[2024-10-16 23:21:01.867][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2024-10-16 23:21:01.868][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-10-16 23:21:01.869][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-10-16 23:21:01.870][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2024-10-16 23:21:01.872][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-10-16 23:21:01.873][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-10-16 23:21:01.874][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2024-10-16 23:21:01.875][self$setPropertyValue]
biodb.DEBUG[2024-10-16 23:21:01.876][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-10-16 23:21:01.877][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-10-16 23:21:01.878][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2024-10-16 23:21:01.879][self$setPropertyValue]
biodb.DEBUG[2024-10-16 23:21:01.881][self$getDbsInfo()$define] Define connector comp.sqlite.
biodb.DEBUG[2024-10-16 23:21:01.883][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2024-10-16 23:21:01.884][self$setPropertyValue] Setting property "description" to "A connector to handle a compound database stored inside an SQLite file.".
biodb.DEBUG[2024-10-16 23:21:01.885][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2024-10-16 23:21:01.886][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2024-10-16 23:21:01.887][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2024-10-16 23:21:01.888][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2024-10-16 23:21:01.890][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2024-10-16 23:21:01.891][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2024-10-16 23:21:01.892][self$setPropertyValue] Setting property "entry.content.type" to "list".
biodb.DEBUG[2024-10-16 23:21:01.893][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2024-10-16 23:21:01.894][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2024-10-16 23:21:01.896][self$setPropertyValue] Setting property "name" to "Compound SQLite".
biodb.DEBUG[2024-10-16 23:21:01.897][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2024-10-16 23:21:01.898][self$setPropertyValue]
biodb.DEBUG[2024-10-16 23:21:01.899][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2024-10-16 23:21:01.900][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2024-10-16 23:21:01.900][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2024-10-16 23:21:01.900][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2024-10-16 23:21:01.900][self$setPropertyValue] Setting property "searchable.fields" to "average.mass".
biodb.DEBUG[2024-10-16 23:21:01.900][self$setPropertyValue] Setting property "searchable.fields" to "nominal.mass".
biodb.DEBUG[2024-10-16 23:21:01.901][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2024-10-16 23:21:01.903][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-10-16 23:21:01.904][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-10-16 23:21:01.905][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2024-10-16 23:21:01.906][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-10-16 23:21:01.907][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-10-16 23:21:01.908][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2024-10-16 23:21:01.909][self$setPropertyValue]
biodb.DEBUG[2024-10-16 23:21:01.910][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-10-16 23:21:01.912][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-10-16 23:21:01.913][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2024-10-16 23:21:01.914][self$setPropertyValue]
biodb.DEBUG[2024-10-16 23:21:01.915][self$getDbsInfo()$define] Define connector mass.csv.file.
biodb.DEBUG[2024-10-16 23:21:01.917][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2024-10-16 23:21:01.918][self$setPropertyValue] Setting property "description" to "A connector to handle a mass spectra database stored inside a CSV file. It is possible to choose the separator for the CSV file, as well as match the column names with the biodb entry fields..".
biodb.DEBUG[2024-10-16 23:21:01.920][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2024-10-16 23:21:01.921][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2024-10-16 23:21:01.922][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2024-10-16 23:21:01.923][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2024-10-16 23:21:01.924][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2024-10-16 23:21:01.925][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2024-10-16 23:21:01.927][self$setPropertyValue] Setting property "entry.content.type" to "tsv".
biodb.DEBUG[2024-10-16 23:21:01.928][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2024-10-16 23:21:01.929][self$setPropertyValue] Setting property "mass.db" to "TRUE".
biodb.DEBUG[2024-10-16 23:21:01.930][self$setPropertyValue] Setting property "name" to "Mass spectra CSV File".
biodb.DEBUG[2024-10-16 23:21:01.931][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2024-10-16 23:21:01.932][self$setPropertyValue]
biodb.DEBUG[2024-10-16 23:21:01.934][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2024-10-16 23:21:01.935][self$setPropertyValue]
biodb.DEBUG[2024-10-16 23:21:01.936][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2024-10-16 23:21:01.937][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-10-16 23:21:01.938][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-10-16 23:21:01.939][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2024-10-16 23:21:01.940][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-10-16 23:21:01.942][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-10-16 23:21:01.943][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2024-10-16 23:21:01.944][self$setPropertyValue]
biodb.DEBUG[2024-10-16 23:21:01.945][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-10-16 23:21:01.946][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-10-16 23:21:01.947][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2024-10-16 23:21:01.948][self$setPropertyValue]
biodb.DEBUG[2024-10-16 23:21:01.950][self$getDbsInfo()$define] Define connector mass.sqlite.
biodb.DEBUG[2024-10-16 23:21:01.952][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2024-10-16 23:21:01.953][self$setPropertyValue] Setting property "description" to "A connector to handle a mass spectra database stored inside an SQLite file.".
biodb.DEBUG[2024-10-16 23:21:01.954][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2024-10-16 23:21:01.955][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2024-10-16 23:21:01.956][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2024-10-16 23:21:01.958][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2024-10-16 23:21:01.959][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2024-10-16 23:21:01.960][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2024-10-16 23:21:01.961][self$setPropertyValue] Setting property "entry.content.type" to "list".
biodb.DEBUG[2024-10-16 23:21:01.962][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2024-10-16 23:21:01.964][self$setPropertyValue] Setting property "mass.db" to "TRUE".
biodb.DEBUG[2024-10-16 23:21:01.965][self$setPropertyValue] Setting property "name" to "Mass spectra SQLite".
biodb.DEBUG[2024-10-16 23:21:01.966][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2024-10-16 23:21:01.967][self$setPropertyValue]
biodb.DEBUG[2024-10-16 23:21:01.968][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2024-10-16 23:21:01.970][self$setPropertyValue]
biodb.DEBUG[2024-10-16 23:21:01.971][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2024-10-16 23:21:01.972][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-10-16 23:21:01.973][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-10-16 23:21:01.974][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2024-10-16 23:21:01.975][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-10-16 23:21:01.976][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-10-16 23:21:01.978][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2024-10-16 23:21:01.979][self$setPropertyValue]
biodb.DEBUG[2024-10-16 23:21:01.980][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-10-16 23:21:01.981][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-10-16 23:21:01.982][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2024-10-16 23:21:01.983][self$setPropertyValue]
biodb.DEBUG[2024-10-16 23:21:01.985][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2024-10-16 23:21:01.986][FUN] Trying to call function notifyNewObservers on observer BiodbConfig.
biodb.DEBUG[2024-10-16 23:21:01.987][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-10-16 23:21:01.988][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-10-16 23:21:01.989][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-10-16 23:21:01.990][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-10-16 23:21:01.991][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-10-16 23:21:01.992][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-10-16 23:21:01.994][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-10-16 23:21:01.995][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-10-16 23:21:01.996][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-10-16 23:21:01.998][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-10-16 23:21:02.000][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-10-16 23:21:02.001][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-10-16 23:21:02.002][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-10-16 23:21:02.003][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-10-16 23:21:02.004][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-10-16 23:21:02.005][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-10-16 23:21:02.006][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-10-16 23:21:02.008][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-10-16 23:21:02.009][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-10-16 23:21:02.010][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-10-16 23:21:02.011][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-10-16 23:21:02.012][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-10-16 23:21:02.013][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-10-16 23:21:02.014][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-10-16 23:21:02.015][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-10-16 23:21:02.016][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-10-16 23:21:02.017][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-10-16 23:21:02.018][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-10-16 23:21:02.019][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-10-16 23:21:02.020][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-10-16 23:21:02.022][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-10-16 23:21:02.023][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-10-16 23:21:02.024][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-10-16 23:21:02.025][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-10-16 23:21:02.026][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-10-16 23:21:02.027][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-10-16 23:21:02.028][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-10-16 23:21:02.029][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-10-16 23:21:02.030][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-10-16 23:21:02.031][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-10-16 23:21:02.032][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-10-16 23:21:02.033][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-10-16 23:21:02.034][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-10-16 23:21:02.036][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-10-16 23:21:02.037][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-10-16 23:21:02.038][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-10-16 23:21:02.039][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-10-16 23:21:02.040][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-10-16 23:21:02.041][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-10-16 23:21:02.042][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-10-16 23:21:02.043][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-10-16 23:21:02.044][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-10-16 23:21:02.045][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-10-16 23:21:02.046][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-10-16 23:21:02.047][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-10-16 23:21:02.048][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-10-16 23:21:02.050][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-10-16 23:21:02.051][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-10-16 23:21:02.052][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-10-16 23:21:02.053][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-10-16 23:21:02.054][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-10-16 23:21:02.055][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-10-16 23:21:02.056][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-10-16 23:21:02.057][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-10-16 23:21:02.058][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-10-16 23:21:02.059][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-10-16 23:21:02.060][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-10-16 23:21:02.061][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-10-16 23:21:02.062][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-10-16 23:21:02.063][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-10-16 23:21:02.064][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-10-16 23:21:02.066][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-10-16 23:21:02.067][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-10-16 23:21:02.068][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-10-16 23:21:02.069][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-10-16 23:21:02.070][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-10-16 23:21:02.071][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-10-16 23:21:02.072][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-10-16 23:21:02.073][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-10-16 23:21:02.074][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-10-16 23:21:02.075][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-10-16 23:21:02.076][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-10-16 23:21:02.077][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-10-16 23:21:02.078][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-10-16 23:21:02.079][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-10-16 23:21:02.081][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-10-16 23:21:02.082][self$getEntryFields()$define] Define field accession.
biodb.DEBUG[2024-10-16 23:21:02.083][self$getEntryFields()$define] Define field description.
biodb.DEBUG[2024-10-16 23:21:02.085][self$getEntryFields()$define] Define field name.
biodb.DEBUG[2024-10-16 23:21:02.087][self$getEntryFields()$define] Define field cas.id.
biodb.DEBUG[2024-10-16 23:21:02.088][self$getEntryFields()$define] Define field chebi.id.
biodb.DEBUG[2024-10-16 23:21:02.090][self$getEntryFields()$define] Define field chemspider.id.
biodb.DEBUG[2024-10-16 23:21:02.091][self$getEntryFields()$define] Define field comp.csv.file.id.
biodb.DEBUG[2024-10-16 23:21:02.093][self$getEntryFields()$define] Define field comp.sqlite.id.
biodb.DEBUG[2024-10-16 23:21:02.094][self$getEntryFields()$define] Define field expasy.enzyme.id.
biodb.DEBUG[2024-10-16 23:21:02.096][self$getEntryFields()$define] Define field hmdb.metabolites.id.
biodb.DEBUG[2024-10-16 23:21:02.097][self$getEntryFields()$define] Define field kegg.compound.id.
biodb.DEBUG[2024-10-16 23:21:02.099][self$getEntryFields()$define] Define field kegg.genes.id.
biodb.DEBUG[2024-10-16 23:21:02.101][self$getEntryFields()$define] Define field mass.csv.file.id.
biodb.DEBUG[2024-10-16 23:21:02.102][self$getEntryFields()$define] Define field mass.sqlite.id.
biodb.DEBUG[2024-10-16 23:21:02.104][self$getEntryFields()$define] Define field ncbi.gene.id.
biodb.DEBUG[2024-10-16 23:21:02.105][self$getEntryFields()$define] Define field ncbi.pubchem.comp.id.
biodb.DEBUG[2024-10-16 23:21:02.107][self$getEntryFields()$define] Define field compound.id.
biodb.DEBUG[2024-10-16 23:21:02.108][self$getEntryFields()$define] Define field average.mass.
biodb.DEBUG[2024-10-16 23:21:02.110][self$getEntryFields()$define] Define field molecular.mass.
biodb.DEBUG[2024-10-16 23:21:02.111][self$getEntryFields()$define] Define field monoisotopic.mass.
biodb.DEBUG[2024-10-16 23:21:02.113][self$getEntryFields()$define] Define field nominal.mass.
biodb.DEBUG[2024-10-16 23:21:02.114][self$getEntryFields()$define] Define field peak.attr.
biodb.DEBUG[2024-10-16 23:21:02.116][self$getEntryFields()$define] Define field peak.comp.
biodb.DEBUG[2024-10-16 23:21:02.118][self$getEntryFields()$define] Define field peak.error.ppm.
biodb.DEBUG[2024-10-16 23:21:02.119][self$getEntryFields()$define] Define field peak.formula.
biodb.DEBUG[2024-10-16 23:21:02.121][self$getEntryFields()$define] Define field peak.intensity.
biodb.DEBUG[2024-10-16 23:21:02.122][self$getEntryFields()$define] Define field peak.mass.
biodb.DEBUG[2024-10-16 23:21:02.124][self$getEntryFields()$define] Define field peak.mztheo.
biodb.DEBUG[2024-10-16 23:21:02.125][self$getEntryFields()$define] Define field peak.mzexp.
biodb.DEBUG[2024-10-16 23:21:02.127][self$getEntryFields()$define] Define field peak.mz.
biodb.DEBUG[2024-10-16 23:21:02.128][self$getEntryFields()$define] Define field peak.relative.intensity.
biodb.DEBUG[2024-10-16 23:21:02.130][self$getEntryFields()$define] Define field peaks.
biodb.DEBUG[2024-10-16 23:21:02.131][self$getEntryFields()$define] Define field chrom.col.constructor.
biodb.DEBUG[2024-10-16 23:21:02.133][self$getEntryFields()$define] Define field chrom.col.diameter.
biodb.DEBUG[2024-10-16 23:21:02.134][self$getEntryFields()$define] Define field chrom.col.id.
biodb.DEBUG[2024-10-16 23:21:02.136][self$getEntryFields()$define] Define field chrom.col.length.
biodb.DEBUG[2024-10-16 23:21:02.137][self$getEntryFields()$define] Define field chrom.col.method.protocol.
biodb.DEBUG[2024-10-16 23:21:02.139][self$getEntryFields()$define] Define field chrom.col.name.
biodb.DEBUG[2024-10-16 23:21:02.141][self$getEntryFields()$define] Define field chrom.flow.gradient.
biodb.DEBUG[2024-10-16 23:21:02.142][self$getEntryFields()$define] Define field chrom.flow.rate.
biodb.DEBUG[2024-10-16 23:21:02.144][self$getEntryFields()$define] Define field chrom.rt.
biodb.DEBUG[2024-10-16 23:21:02.146][self$getEntryFields()$define] Define field chrom.rt.max.
biodb.DEBUG[2024-10-16 23:21:02.148][self$getEntryFields()$define] Define field chrom.rt.min.
biodb.DEBUG[2024-10-16 23:21:02.151][self$getEntryFields()$define] Define field chrom.rt.unit.
biodb.DEBUG[2024-10-16 23:21:02.154][self$getEntryFields()$define] Define field chrom.solvent.
biodb.DEBUG[2024-10-16 23:21:02.156][self$getEntryFields()$define] Define field aa.seq.
biodb.DEBUG[2024-10-16 23:21:02.158][self$getEntryFields()$define] Define field aa.seq.length.
biodb.DEBUG[2024-10-16 23:21:02.160][self$getEntryFields()$define] Define field aa.seq.location.
biodb.DEBUG[2024-10-16 23:21:02.163][self$getEntryFields()$define] Define field nt.seq.
biodb.DEBUG[2024-10-16 23:21:02.166][self$getEntryFields()$define] Define field nt.seq.length.
biodb.DEBUG[2024-10-16 23:21:02.168][self$getEntryFields()$define] Define field ec.
biodb.DEBUG[2024-10-16 23:21:02.171][self$getEntryFields()$define] Define field organism.
biodb.DEBUG[2024-10-16 23:21:02.174][self$getEntryFields()$define] Define field pathway.class.
biodb.DEBUG[2024-10-16 23:21:02.184][self$getEntryFields()$define] Define field catalytic.activity.
biodb.DEBUG[2024-10-16 23:21:02.188][self$getEntryFields()$define] Define field cofactor.
biodb.DEBUG[2024-10-16 23:21:02.193][self$getEntryFields()$define] Define field gene.symbol.
biodb.DEBUG[2024-10-16 23:21:02.196][self$getEntryFields()$define] Define field charge.
biodb.DEBUG[2024-10-16 23:21:02.199][self$getEntryFields()$define] Define field comp.iupac.name.allowed.
biodb.DEBUG[2024-10-16 23:21:02.202][self$getEntryFields()$define] Define field comp.iupac.name.cas.
biodb.DEBUG[2024-10-16 23:21:02.204][self$getEntryFields()$define] Define field comp.iupac.name.pref.
biodb.DEBUG[2024-10-16 23:21:02.206][self$getEntryFields()$define] Define field comp.iupac.name.syst.
biodb.DEBUG[2024-10-16 23:21:02.208][self$getEntryFields()$define] Define field comp.iupac.name.trad.
biodb.DEBUG[2024-10-16 23:21:02.210][self$getEntryFields()$define] Define field comp.super.class.
biodb.DEBUG[2024-10-16 23:21:02.212][self$getEntryFields()$define] Define field equation.
biodb.DEBUG[2024-10-16 23:21:02.213][self$getEntryFields()$define] Define field formula.
biodb.DEBUG[2024-10-16 23:21:02.215][self$getEntryFields()$define] Define field composition.
biodb.DEBUG[2024-10-16 23:21:02.217][self$getEntryFields()$define] Define field inchi.
biodb.DEBUG[2024-10-16 23:21:02.219][self$getEntryFields()$define] Define field inchikey.
biodb.DEBUG[2024-10-16 23:21:02.220][self$getEntryFields()$define] Define field logp.
biodb.DEBUG[2024-10-16 23:21:02.222][self$getEntryFields()$define] Define field ms.level.
biodb.DEBUG[2024-10-16 23:21:02.223][self$getEntryFields()$define] Define field ms.mode.
biodb.DEBUG[2024-10-16 23:21:02.225][self$getEntryFields()$define] Define field msdev.
biodb.DEBUG[2024-10-16 23:21:02.227][self$getEntryFields()$define] Define field msdevtype.
biodb.DEBUG[2024-10-16 23:21:02.228][self$getEntryFields()$define] Define field msprecannot.
biodb.DEBUG[2024-10-16 23:21:02.230][self$getEntryFields()$define] Define field msprecmz.
biodb.DEBUG[2024-10-16 23:21:02.231][self$getEntryFields()$define] Define field mstype.
biodb.DEBUG[2024-10-16 23:21:02.233][self$getEntryFields()$define] Define field nb.compounds.
biodb.DEBUG[2024-10-16 23:21:02.234][self$getEntryFields()$define] Define field nb.peaks.
biodb.DEBUG[2024-10-16 23:21:02.236][self$getEntryFields()$define] Define field products.
biodb.DEBUG[2024-10-16 23:21:02.238][self$getEntryFields()$define] Define field smiles.
biodb.DEBUG[2024-10-16 23:21:02.239][self$getEntryFields()$define] Define field smiles.canonical.
biodb.DEBUG[2024-10-16 23:21:02.247][self$getEntryFields()$define] Define field smiles.isomeric.
biodb.DEBUG[2024-10-16 23:21:02.249][self$getEntryFields()$define] Define field substrates.
biodb.DEBUG[2024-10-16 23:21:02.250][initialize] Created successfully new BiodbMain instance.
biodb.DEBUG[2024-10-16 23:21:02.253][initialize] This is biodb version 1.12.0.
biodb.DEBUG[2024-10-16 23:21:02.254][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2024-10-16 23:21:02.255][FUN] Trying to call function notifyNewObservers on observer BiodbEntryFields.
biodb.DEBUG[2024-10-16 23:21:02.256][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-10-16 23:21:02.257][FUN] Trying to call function notifyNewObservers on observer BiodbConfig.
biodb.DEBUG[2024-10-16 23:21:02.258][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-10-16 23:21:02.259][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-10-16 23:21:02.260][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-10-16 23:21:02.261][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-10-16 23:21:02.262][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-10-16 23:21:02.263][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-10-16 23:21:02.264][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-10-16 23:21:02.265][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-10-16 23:21:02.267][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-10-16 23:21:02.268][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-10-16 23:21:02.269][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-10-16 23:21:02.270][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-10-16 23:21:02.271][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-10-16 23:21:02.272][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-10-16 23:21:02.273][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-10-16 23:21:02.274][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-10-16 23:21:02.275][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-10-16 23:21:02.276][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-10-16 23:21:02.277][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-10-16 23:21:02.278][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-10-16 23:21:02.279][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-10-16 23:21:02.280][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-10-16 23:21:02.281][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-10-16 23:21:02.283][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-10-16 23:21:02.284][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-10-16 23:21:02.285][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-10-16 23:21:02.286][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-10-16 23:21:02.287][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-10-16 23:21:02.288][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-10-16 23:21:02.289][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-10-16 23:21:02.290][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-10-16 23:21:02.291][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-10-16 23:21:02.292][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-10-16 23:21:02.293][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-10-16 23:21:02.294][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-10-16 23:21:02.295][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-10-16 23:21:02.296][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-10-16 23:21:02.297][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-10-16 23:21:02.298][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-10-16 23:21:02.299][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-10-16 23:21:02.300][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-10-16 23:21:02.301][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-10-16 23:21:02.303][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-10-16 23:21:02.304][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-10-16 23:21:02.305][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-10-16 23:21:02.306][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-10-16 23:21:02.307][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-10-16 23:21:02.308][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-10-16 23:21:02.309][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-10-16 23:21:02.310][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-10-16 23:21:02.311][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-10-16 23:21:02.312][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-10-16 23:21:02.313][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-10-16 23:21:02.314][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-10-16 23:21:02.315][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-10-16 23:21:02.316][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-10-16 23:21:02.317][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-10-16 23:21:02.318][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-10-16 23:21:02.319][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-10-16 23:21:02.320][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-10-16 23:21:02.321][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-10-16 23:21:02.322][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-10-16 23:21:02.323][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-10-16 23:21:02.324][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-10-16 23:21:02.326][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-10-16 23:21:02.327][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-10-16 23:21:02.328][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-10-16 23:21:02.329][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-10-16 23:21:02.330][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-10-16 23:21:02.331][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-10-16 23:21:02.332][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-10-16 23:21:02.333][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-10-16 23:21:02.334][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-10-16 23:21:02.335][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-10-16 23:21:02.336][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-10-16 23:21:02.337][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-10-16 23:21:02.338][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-10-16 23:21:02.339][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-10-16 23:21:02.340][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-10-16 23:21:02.341][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-10-16 23:21:02.342][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-10-16 23:21:02.343][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-10-16 23:21:02.344][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-10-16 23:21:02.345][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-10-16 23:21:02.347][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-10-16 23:21:02.348][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-10-16 23:21:02.349][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-10-16 23:21:02.350][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-10-16 23:21:02.351][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-10-16 23:21:02.352][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-10-16 23:21:02.353][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-10-16 23:21:02.354][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-10-16 23:21:02.355][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-10-16 23:21:02.356][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-10-16 23:21:02.357][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-10-16 23:21:02.358][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-10-16 23:21:02.359][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-10-16 23:21:02.360][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-10-16 23:21:02.361][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-10-16 23:21:02.362][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-10-16 23:21:02.364][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-10-16 23:21:02.365][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-10-16 23:21:02.366][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-10-16 23:21:02.367][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-10-16 23:21:02.368][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-10-16 23:21:02.369][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-10-16 23:21:02.370][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-10-16 23:21:02.371][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-10-16 23:21:02.372][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-10-16 23:21:02.373][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-10-16 23:21:02.374][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-10-16 23:21:02.375][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-10-16 23:21:02.376][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-10-16 23:21:02.377][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-10-16 23:21:02.378][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-10-16 23:21:02.379][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-10-16 23:21:02.381][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-10-16 23:21:02.382][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-10-16 23:21:02.383][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-10-16 23:21:02.384][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-10-16 23:21:03.303][biodb$loadDefinitions] Load definitions from file "E:/biocbuild/bbs-3.19-bioc/R/library/biodbChebi/definitions.yml".
biodb.DEBUG[2024-10-16 23:21:03.675][self$getDbsInfo()$define] Define connector chebi.
biodb.DEBUG[2024-10-16 23:21:03.678][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2024-10-16 23:21:03.679][self$setPropertyValue] Setting property "description" to "NA".
biodb.DEBUG[2024-10-16 23:21:03.681][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2024-10-16 23:21:03.683][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2024-10-16 23:21:03.685][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2024-10-16 23:21:03.687][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2024-10-16 23:21:03.689][self$setPropertyValue] Setting property "editable" to "FALSE".
biodb.DEBUG[2024-10-16 23:21:03.691][self$setPropertyValue] Setting property "entry.content.encoding" to "UTF-8".
biodb.DEBUG[2024-10-16 23:21:03.693][self$setPropertyValue] Setting property "entry.content.type" to "xml".
biodb.DEBUG[2024-10-16 23:21:03.695][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2024-10-16 23:21:03.697][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2024-10-16 23:21:03.699][self$setPropertyValue] Setting property "name" to "ChEBI".
biodb.DEBUG[2024-10-16 23:21:03.701][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2024-10-16 23:21:03.703][self$setPropertyValue] Setting property "parsing.expr" to "substring-after(//chebi:return/chebi:chebiId,'CHEBI:')".
biodb.DEBUG[2024-10-16 23:21:03.703][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:charge".
biodb.DEBUG[2024-10-16 23:21:03.703][self$setPropertyValue] Setting property "parsing.expr" to "c("//chebi:Formulae/chebi:source[text()='ChEBI']/../chebi:data", "(//chebi:Formulae/chebi:data)[1]")".
biodb.DEBUG[2024-10-16 23:21:03.703][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:return/chebi:inchi".
biodb.DEBUG[2024-10-16 23:21:03.703][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:return/chebi:inchiKey".
biodb.DEBUG[2024-10-16 23:21:03.703][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:DatabaseLinks/chebi:type[text()='KEGG COMPOUND accession']/../chebi:data".
biodb.DEBUG[2024-10-16 23:21:03.703][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:mass".
biodb.DEBUG[2024-10-16 23:21:03.703][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:monoisotopicMass".
biodb.DEBUG[2024-10-16 23:21:03.703][self$setPropertyValue] Setting property "parsing.expr" to "c("//chebi:chebiAsciiName", "//chebi:Synonyms/chebi:data")".
biodb.DEBUG[2024-10-16 23:21:03.703][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:return/chebi:entityStar".
biodb.DEBUG[2024-10-16 23:21:03.703][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:return/chebi:smiles".
biodb.DEBUG[2024-10-16 23:21:03.705][self$setPropertyValue] Setting property "remote" to "TRUE".
biodb.DEBUG[2024-10-16 23:21:03.707][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2024-10-16 23:21:03.707][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2024-10-16 23:21:03.707][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2024-10-16 23:21:03.709][self$setPropertyValue] Setting property "scheduler.n" to "3".
biodb.DEBUG[2024-10-16 23:21:03.711][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-10-16 23:21:03.713][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-10-16 23:21:03.715][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2024-10-16 23:21:03.717][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-10-16 23:21:03.718][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-10-16 23:21:03.720][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2024-10-16 23:21:03.722][self$setPropertyValue] Setting property "urls" to "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2024-10-16 23:21:03.722][self$setPropertyValue] Setting property "urls" to "https://www.ebi.ac.uk/webservices/chebi/2.0/".
biodb.DEBUG[2024-10-16 23:21:03.724][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-10-16 23:21:03.726][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-10-16 23:21:03.728][self$setPropertyValue] Setting property "writable" to "FALSE".
biodb.DEBUG[2024-10-16 23:21:03.730][self$setPropertyValue] Setting property "xml.ns" to "https://www.ebi.ac.uk/webservices/chebi".
biodb.DEBUG[2024-10-16 23:21:03.730][self$setPropertyValue] Setting property "xml.ns" to "http://www.w3.org/2001/XMLSchema".
biodb.DEBUG[2024-10-16 23:21:03.732][self$getEntryFields()$define] Define field chebi.id.
biodb.DEBUG[2024-10-16 23:21:03.735][self$getEntryFields()$define] Define field kegg.compound.id.
biodb.DEBUG[2024-10-16 23:21:03.738][self$getEntryFields()$define] Define field n_stars.
biodb.DEBUG[2024-10-16 23:21:03.740][self$getEntryFields()$define] Define field molecular.mass.
biodb.DEBUG[2024-10-16 23:21:03.743][self$getEntryFields()$define] Define field inchi.
biodb.DEBUG[2024-10-16 23:21:03.746][self$getEntryFields()$define] Define field inchikey.
biodb.DEBUG[2024-10-16 23:21:03.752][super$initialize] Initialize connector chebi.
biodb.DEBUG[2024-10-16 23:21:03.754][super$initialize] Register connector chebi with the request scheduler
biodb.DEBUG[2024-10-16 23:21:03.756][private$bdb$getRequestScheduler()$re ...] Register connector chebi.
biodb.DEBUG[2024-10-16 23:21:03.759][private$addConnectorRules] Create new rule for URL "www.ebi.ac.uk" of connector "chebi".
biodb.DEBUG[2024-10-16 23:21:03.761][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2024-10-16 23:21:03.763][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2024-10-16 23:21:03.765][rule$addConnector] Connector "chebi" is already listed in rule "www.ebi.ac.uk".
biodb.DEBUG[2024-10-16 23:21:03.767][biodb$getFactory()$createConn] Creating new connector chebi for database class chebi .
biodb.INFO [2024-10-16 23:21:03.771][biodb::testThat]
biodb.INFO [2024-10-16 23:21:03.772][biodb::testThat] Running test function  test.chebi.wsGetLiteEntity  (" Web service getLiteEntity works fine. ").
biodb.INFO [2024-10-16 23:21:03.774][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-10-16 23:21:03.776][biodb::testThat]
biodb.DEBUG[2024-10-16 23:21:03.782][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/webservice?wsdl".
biodb.DEBUG[2024-10-16 23:21:03.790][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-10-16 23:21:03.793][cch$loadFileContent] Trying to load 1 files from cache: [1]: "1ad88a023c4ce2bc0629db4acebeee05".
biodb.TRACE[2024-10-16 23:21:03.796][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-10-16 23:21:03.804][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/1ad88a023c4ce2bc0629db4acebeee05.content".
biodb.DEBUG[2024-10-16 23:21:03.812][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=2571&searchCategory=CHEBI ID&maximumResults=10&starsCategory=ALL".
biodb.DEBUG[2024-10-16 23:21:03.818][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-10-16 23:21:03.821][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-10-16 23:21:03.824][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=2571&searchCategory=CHEBI%20ID&maximumResults=10&starsCategory=ALL".
biodb.TRACE[2024-10-16 23:21:04.195][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=2571&searchCategory=CHEBI%20ID&maximumResults=10&starsCategory=ALL).
biodb.DEBUG[2024-10-16 23:21:04.557][self$getBiodb()$getRequestScheduler( ...] Saving content of request to cache.
biodb.TRACE[2024-10-16 23:21:04.560][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/04c26672f8368e71348af4b34238160e.content"
biodb.TRACE[2024-10-16 23:21:04.565][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/04c26672f8368e71348af4b34238160e.request"
biodb.INFO [2024-10-16 23:21:04.580][biodb$terminate] Closing BiodbMain instance...
biodb.DEBUG[2024-10-16 23:21:04.583][private$conn[[conn]]$.__enclos_env__ ...] Unregister connector chebi from the request scheduler
biodb.INFO [2024-10-16 23:21:04.585][self$deleteConn] Connector "chebi" deleted.
biodb.DEBUG[2024-10-16 23:21:04.587][notifyObservers] Notify observers for terminate.
biodb.DEBUG[2024-10-16 23:21:04.588][FUN] Trying to call function terminate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-10-16 23:21:04.590][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-10-16 23:21:04.592][FUN] Trying to call function terminate on observer BiodbEntryFields.
biodb.DEBUG[2024-10-16 23:21:04.593][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-10-16 23:21:04.594][FUN] Trying to call function terminate on observer BiodbConfig.
biodb.DEBUG[2024-10-16 23:21:04.595][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.INFO [2024-10-16 23:21:04.744][biodb::testContext]
biodb.INFO [2024-10-16 23:21:04.746][biodb::testContext] ********************************************************************************
biodb.INFO [2024-10-16 23:21:04.747][biodb::testContext] Test context - Non regression tests
biodb.INFO [2024-10-16 23:21:04.749][biodb::testContext] ********************************************************************************
biodb.INFO [2024-10-16 23:21:04.751][biodb::testContext]
biodb.INFO [2024-10-16 23:21:04.755][private$loadBiodbPkgsDefinitions] Loading definitions from package biodb version 1.12.0.
biodb.DEBUG[2024-10-16 23:21:04.757][self$loadDefinitions] Load definitions from file "E:/biocbuild/bbs-3.19-bioc/R/library/biodb/definitions.yml".
biodb.DEBUG[2024-10-16 23:21:04.762][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2024-10-16 23:21:04.764][self$getConfig()$define] Define config key allow.huge.downloads.
biodb.DEBUG[2024-10-16 23:21:04.765][self$set] Set key allow.huge.downloads to TRUE.
biodb.DEBUG[2024-10-16 23:21:04.766][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-10-16 23:21:04.767][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-10-16 23:21:04.768][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-10-16 23:21:04.769][self$getConfig()$define] Define config key autoload.extra.pkgs.
biodb.DEBUG[2024-10-16 23:21:04.771][self$set] Set key autoload.extra.pkgs to TRUE.
biodb.DEBUG[2024-10-16 23:21:04.773][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-10-16 23:21:04.775][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-10-16 23:21:04.777][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-10-16 23:21:04.778][self$getConfig()$define] Define config key cache.all.requests.
biodb.DEBUG[2024-10-16 23:21:04.780][self$set] Set key cache.all.requests to TRUE.
biodb.DEBUG[2024-10-16 23:21:04.782][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-10-16 23:21:04.784][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-10-16 23:21:04.786][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-10-16 23:21:04.787][self$getConfig()$define] Define config key cache.directory.
biodb.DEBUG[2024-10-16 23:21:04.789][self$getConfig()$define] Define config key cache.read.only.
biodb.DEBUG[2024-10-16 23:21:04.791][self$set] Set key cache.read.only to FALSE.
biodb.DEBUG[2024-10-16 23:21:04.793][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-10-16 23:21:04.795][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-10-16 23:21:04.797][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-10-16 23:21:04.799][self$getConfig()$define] Define config key cache.subfolders.
biodb.DEBUG[2024-10-16 23:21:04.800][self$getConfig()$define] Define config key cache.system.
biodb.DEBUG[2024-10-16 23:21:04.802][self$set] Set key cache.system to TRUE.
biodb.DEBUG[2024-10-16 23:21:04.804][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-10-16 23:21:04.806][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-10-16 23:21:04.808][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-10-16 23:21:04.809][self$getConfig()$define] Define config key use.cache.for.local.db.
biodb.DEBUG[2024-10-16 23:21:04.812][self$set] Set key use.cache.for.local.db to FALSE.
biodb.DEBUG[2024-10-16 23:21:04.813][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-10-16 23:21:04.815][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-10-16 23:21:04.817][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-10-16 23:21:04.819][self$getConfig()$define] Define config key dwnld.chunk.size.
biodb.DEBUG[2024-10-16 23:21:04.821][self$getConfig()$define] Define config key dwnld.timeout.
biodb.DEBUG[2024-10-16 23:21:04.823][self$set] Set key dwnld.timeout to 3600.
biodb.DEBUG[2024-10-16 23:21:04.824][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-10-16 23:21:04.826][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-10-16 23:21:04.828][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-10-16 23:21:04.830][self$getConfig()$define] Define config key compute.fields.
biodb.DEBUG[2024-10-16 23:21:04.832][self$set] Set key compute.fields to TRUE.
biodb.DEBUG[2024-10-16 23:21:04.834][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-10-16 23:21:04.835][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-10-16 23:21:04.837][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-10-16 23:21:04.839][self$getConfig()$define] Define config key factory.cache.
biodb.DEBUG[2024-10-16 23:21:04.841][self$getConfig()$define] Define config key force.locale.
biodb.DEBUG[2024-10-16 23:21:04.843][self$set] Set key force.locale to TRUE.
biodb.DEBUG[2024-10-16 23:21:04.845][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-10-16 23:21:04.847][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-10-16 23:21:04.849][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-10-16 23:21:04.851][self$getConfig()$define] Define config key longterm.cache.subfolder.
biodb.DEBUG[2024-10-16 23:21:04.853][self$getConfig()$define] Define config key msg.caution.lvl.
biodb.DEBUG[2024-10-16 23:21:04.854][self$getConfig()$define] Define config key msg.debug.lvl.
biodb.DEBUG[2024-10-16 23:21:04.856][self$getConfig()$define] Define config key msg.info.lvl.
biodb.DEBUG[2024-10-16 23:21:04.857][self$getConfig()$define] Define config key multival.field.sep.
biodb.DEBUG[2024-10-16 23:21:04.858][self$set] Set key multival.field.sep to ";".
biodb.DEBUG[2024-10-16 23:21:04.859][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-10-16 23:21:04.860][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-10-16 23:21:04.862][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-10-16 23:21:04.863][self$getConfig()$define] Define config key intra.field.name.sep.
biodb.DEBUG[2024-10-16 23:21:04.865][self$set] Set key intra.field.name.sep to ".".
biodb.DEBUG[2024-10-16 23:21:04.866][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-10-16 23:21:04.867][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-10-16 23:21:04.868][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-10-16 23:21:04.869][self$getConfig()$define] Define config key entries.sep.
biodb.DEBUG[2024-10-16 23:21:04.870][self$set] Set key entries.sep to "|".
biodb.DEBUG[2024-10-16 23:21:04.871][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-10-16 23:21:04.873][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-10-16 23:21:04.874][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-10-16 23:21:04.876][self$getConfig()$define] Define config key offline.
biodb.DEBUG[2024-10-16 23:21:04.878][self$set] Set key offline to FALSE.
biodb.DEBUG[2024-10-16 23:21:04.879][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-10-16 23:21:04.880][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-10-16 23:21:04.882][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-10-16 23:21:04.883][self$getConfig()$define] Define config key persistent.cache.impl.
biodb.DEBUG[2024-10-16 23:21:04.884][self$set] Set key persistent.cache.impl to "custom".
biodb.DEBUG[2024-10-16 23:21:04.885][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-10-16 23:21:04.887][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-10-16 23:21:04.888][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-10-16 23:21:04.889][self$getConfig()$define] Define config key proton.mass.
biodb.DEBUG[2024-10-16 23:21:04.890][self$set] Set key proton.mass to 1.0072765.
biodb.DEBUG[2024-10-16 23:21:04.891][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-10-16 23:21:04.892][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-10-16 23:21:04.893][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-10-16 23:21:04.894][self$getConfig()$define] Define config key shortterm.cache.subfolder.
biodb.DEBUG[2024-10-16 23:21:04.896][self$getConfig()$define] Define config key svn.binary.path.
biodb.DEBUG[2024-10-16 23:21:04.899][self$set] Set key svn.binary.path to "".
biodb.DEBUG[2024-10-16 23:21:04.900][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-10-16 23:21:04.901][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-10-16 23:21:04.902][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-10-16 23:21:04.904][self$getConfig()$define] Define config key test.functions.
biodb.DEBUG[2024-10-16 23:21:04.905][self$getConfig()$define] Define config key useragent.
biodb.DEBUG[2024-10-16 23:21:04.907][self$set] Set key useragent to "R Bioconductor biodb library.".
biodb.DEBUG[2024-10-16 23:21:04.908][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-10-16 23:21:04.909][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-10-16 23:21:04.910][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-10-16 23:21:04.912][self$getDbsInfo()$define] Define connector comp.csv.file.
biodb.DEBUG[2024-10-16 23:21:04.915][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2024-10-16 23:21:04.917][self$setPropertyValue] Setting property "description" to "A connector to handle a compound database stored inside a CSV file. It is possible to choose the separator for the CSV file, as well as match the column names with the biodb entry fields.".
biodb.DEBUG[2024-10-16 23:21:04.919][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2024-10-16 23:21:04.921][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2024-10-16 23:21:04.922][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2024-10-16 23:21:04.924][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2024-10-16 23:21:04.927][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2024-10-16 23:21:04.929][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2024-10-16 23:21:04.944][self$setPropertyValue] Setting property "entry.content.type" to "tsv".
biodb.DEBUG[2024-10-16 23:21:04.946][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2024-10-16 23:21:04.948][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2024-10-16 23:21:04.950][self$setPropertyValue] Setting property "name" to "Compound CSV File".
biodb.DEBUG[2024-10-16 23:21:04.952][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2024-10-16 23:21:04.954][self$setPropertyValue]
biodb.DEBUG[2024-10-16 23:21:04.956][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2024-10-16 23:21:04.958][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2024-10-16 23:21:04.958][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2024-10-16 23:21:04.958][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2024-10-16 23:21:04.958][self$setPropertyValue] Setting property "searchable.fields" to "average.mass".
biodb.DEBUG[2024-10-16 23:21:04.958][self$setPropertyValue] Setting property "searchable.fields" to "nominal.mass".
biodb.DEBUG[2024-10-16 23:21:04.960][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2024-10-16 23:21:04.962][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-10-16 23:21:04.964][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-10-16 23:21:04.965][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2024-10-16 23:21:04.967][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-10-16 23:21:04.969][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-10-16 23:21:04.971][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2024-10-16 23:21:04.973][self$setPropertyValue]
biodb.DEBUG[2024-10-16 23:21:04.975][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-10-16 23:21:04.976][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-10-16 23:21:04.978][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2024-10-16 23:21:04.980][self$setPropertyValue]
biodb.DEBUG[2024-10-16 23:21:04.982][self$getDbsInfo()$define] Define connector comp.sqlite.
biodb.DEBUG[2024-10-16 23:21:04.985][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2024-10-16 23:21:04.988][self$setPropertyValue] Setting property "description" to "A connector to handle a compound database stored inside an SQLite file.".
biodb.DEBUG[2024-10-16 23:21:04.990][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2024-10-16 23:21:04.992][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2024-10-16 23:21:04.993][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2024-10-16 23:21:04.995][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2024-10-16 23:21:04.997][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2024-10-16 23:21:04.999][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2024-10-16 23:21:05.001][self$setPropertyValue] Setting property "entry.content.type" to "list".
biodb.DEBUG[2024-10-16 23:21:05.003][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2024-10-16 23:21:05.005][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2024-10-16 23:21:05.007][self$setPropertyValue] Setting property "name" to "Compound SQLite".
biodb.DEBUG[2024-10-16 23:21:05.009][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2024-10-16 23:21:05.011][self$setPropertyValue]
biodb.DEBUG[2024-10-16 23:21:05.012][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2024-10-16 23:21:05.014][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2024-10-16 23:21:05.014][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2024-10-16 23:21:05.014][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2024-10-16 23:21:05.014][self$setPropertyValue] Setting property "searchable.fields" to "average.mass".
biodb.DEBUG[2024-10-16 23:21:05.014][self$setPropertyValue] Setting property "searchable.fields" to "nominal.mass".
biodb.DEBUG[2024-10-16 23:21:05.016][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2024-10-16 23:21:05.018][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-10-16 23:21:05.020][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-10-16 23:21:05.022][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2024-10-16 23:21:05.024][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-10-16 23:21:05.026][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-10-16 23:21:05.028][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2024-10-16 23:21:05.030][self$setPropertyValue]
biodb.DEBUG[2024-10-16 23:21:05.032][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-10-16 23:21:05.034][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-10-16 23:21:05.036][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2024-10-16 23:21:05.038][self$setPropertyValue]
biodb.DEBUG[2024-10-16 23:21:05.040][self$getDbsInfo()$define] Define connector mass.csv.file.
biodb.DEBUG[2024-10-16 23:21:05.043][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2024-10-16 23:21:05.045][self$setPropertyValue] Setting property "description" to "A connector to handle a mass spectra database stored inside a CSV file. It is possible to choose the separator for the CSV file, as well as match the column names with the biodb entry fields..".
biodb.DEBUG[2024-10-16 23:21:05.047][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2024-10-16 23:21:05.049][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2024-10-16 23:21:05.050][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2024-10-16 23:21:05.052][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2024-10-16 23:21:05.054][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2024-10-16 23:21:05.056][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2024-10-16 23:21:05.058][self$setPropertyValue] Setting property "entry.content.type" to "tsv".
biodb.DEBUG[2024-10-16 23:21:05.060][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2024-10-16 23:21:05.061][self$setPropertyValue] Setting property "mass.db" to "TRUE".
biodb.DEBUG[2024-10-16 23:21:05.063][self$setPropertyValue] Setting property "name" to "Mass spectra CSV File".
biodb.DEBUG[2024-10-16 23:21:05.065][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2024-10-16 23:21:05.067][self$setPropertyValue]
biodb.DEBUG[2024-10-16 23:21:05.069][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2024-10-16 23:21:05.071][self$setPropertyValue]
biodb.DEBUG[2024-10-16 23:21:05.073][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2024-10-16 23:21:05.075][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-10-16 23:21:05.076][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-10-16 23:21:05.078][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2024-10-16 23:21:05.080][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-10-16 23:21:05.082][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-10-16 23:21:05.083][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2024-10-16 23:21:05.085][self$setPropertyValue]
biodb.DEBUG[2024-10-16 23:21:05.087][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-10-16 23:21:05.089][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-10-16 23:21:05.091][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2024-10-16 23:21:05.092][self$setPropertyValue]
biodb.DEBUG[2024-10-16 23:21:05.095][self$getDbsInfo()$define] Define connector mass.sqlite.
biodb.DEBUG[2024-10-16 23:21:05.098][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2024-10-16 23:21:05.100][self$setPropertyValue] Setting property "description" to "A connector to handle a mass spectra database stored inside an SQLite file.".
biodb.DEBUG[2024-10-16 23:21:05.102][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2024-10-16 23:21:05.104][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2024-10-16 23:21:05.106][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2024-10-16 23:21:05.108][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2024-10-16 23:21:05.110][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2024-10-16 23:21:05.112][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2024-10-16 23:21:05.114][self$setPropertyValue] Setting property "entry.content.type" to "list".
biodb.DEBUG[2024-10-16 23:21:05.116][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2024-10-16 23:21:05.118][self$setPropertyValue] Setting property "mass.db" to "TRUE".
biodb.DEBUG[2024-10-16 23:21:05.120][self$setPropertyValue] Setting property "name" to "Mass spectra SQLite".
biodb.DEBUG[2024-10-16 23:21:05.122][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2024-10-16 23:21:05.124][self$setPropertyValue]
biodb.DEBUG[2024-10-16 23:21:05.125][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2024-10-16 23:21:05.127][self$setPropertyValue]
biodb.DEBUG[2024-10-16 23:21:05.129][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2024-10-16 23:21:05.131][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-10-16 23:21:05.133][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-10-16 23:21:05.135][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2024-10-16 23:21:05.137][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-10-16 23:21:05.139][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-10-16 23:21:05.141][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2024-10-16 23:21:05.143][self$setPropertyValue]
biodb.DEBUG[2024-10-16 23:21:05.144][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-10-16 23:21:05.146][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-10-16 23:21:05.148][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2024-10-16 23:21:05.150][self$setPropertyValue]
biodb.DEBUG[2024-10-16 23:21:05.153][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2024-10-16 23:21:05.155][FUN] Trying to call function notifyNewObservers on observer BiodbConfig.
biodb.DEBUG[2024-10-16 23:21:05.156][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-10-16 23:21:05.158][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-10-16 23:21:05.160][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-10-16 23:21:05.162][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-10-16 23:21:05.163][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-10-16 23:21:05.165][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-10-16 23:21:05.167][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-10-16 23:21:05.168][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-10-16 23:21:05.170][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-10-16 23:21:05.172][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-10-16 23:21:05.174][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-10-16 23:21:05.175][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-10-16 23:21:05.177][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-10-16 23:21:05.179][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-10-16 23:21:05.180][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-10-16 23:21:05.182][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-10-16 23:21:05.184][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-10-16 23:21:05.185][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-10-16 23:21:05.187][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-10-16 23:21:05.189][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-10-16 23:21:05.191][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-10-16 23:21:05.192][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-10-16 23:21:05.194][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-10-16 23:21:05.196][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-10-16 23:21:05.198][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-10-16 23:21:05.199][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-10-16 23:21:05.201][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-10-16 23:21:05.203][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-10-16 23:21:05.205][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-10-16 23:21:05.206][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-10-16 23:21:05.208][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-10-16 23:21:05.210][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-10-16 23:21:05.212][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-10-16 23:21:05.213][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-10-16 23:21:05.215][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-10-16 23:21:05.217][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-10-16 23:21:05.219][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-10-16 23:21:05.220][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-10-16 23:21:05.223][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-10-16 23:21:05.224][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-10-16 23:21:05.226][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-10-16 23:21:05.229][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-10-16 23:21:05.231][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-10-16 23:21:05.233][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-10-16 23:21:05.234][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-10-16 23:21:05.236][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-10-16 23:21:05.238][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-10-16 23:21:05.240][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-10-16 23:21:05.242][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-10-16 23:21:05.243][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-10-16 23:21:05.245][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-10-16 23:21:05.247][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-10-16 23:21:05.249][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-10-16 23:21:05.251][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-10-16 23:21:05.252][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-10-16 23:21:05.254][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-10-16 23:21:05.256][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-10-16 23:21:05.258][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-10-16 23:21:05.260][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-10-16 23:21:05.261][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-10-16 23:21:05.263][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-10-16 23:21:05.265][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-10-16 23:21:05.267][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-10-16 23:21:05.268][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-10-16 23:21:05.270][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-10-16 23:21:05.272][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-10-16 23:21:05.274][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-10-16 23:21:05.275][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-10-16 23:21:05.277][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-10-16 23:21:05.279][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-10-16 23:21:05.281][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-10-16 23:21:05.282][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-10-16 23:21:05.284][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-10-16 23:21:05.286][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-10-16 23:21:05.287][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-10-16 23:21:05.289][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-10-16 23:21:05.291][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-10-16 23:21:05.293][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-10-16 23:21:05.294][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-10-16 23:21:05.296][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-10-16 23:21:05.298][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-10-16 23:21:05.299][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-10-16 23:21:05.301][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-10-16 23:21:05.303][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-10-16 23:21:05.304][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-10-16 23:21:05.306][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-10-16 23:21:05.308][self$getEntryFields()$define] Define field accession.
biodb.DEBUG[2024-10-16 23:21:05.311][self$getEntryFields()$define] Define field description.
biodb.DEBUG[2024-10-16 23:21:05.313][self$getEntryFields()$define] Define field name.
biodb.DEBUG[2024-10-16 23:21:05.316][self$getEntryFields()$define] Define field cas.id.
biodb.DEBUG[2024-10-16 23:21:05.319][self$getEntryFields()$define] Define field chebi.id.
biodb.DEBUG[2024-10-16 23:21:05.321][self$getEntryFields()$define] Define field chemspider.id.
biodb.DEBUG[2024-10-16 23:21:05.323][self$getEntryFields()$define] Define field comp.csv.file.id.
biodb.DEBUG[2024-10-16 23:21:05.324][self$getEntryFields()$define] Define field comp.sqlite.id.
biodb.DEBUG[2024-10-16 23:21:05.326][self$getEntryFields()$define] Define field expasy.enzyme.id.
biodb.DEBUG[2024-10-16 23:21:05.327][self$getEntryFields()$define] Define field hmdb.metabolites.id.
biodb.DEBUG[2024-10-16 23:21:05.329][self$getEntryFields()$define] Define field kegg.compound.id.
biodb.DEBUG[2024-10-16 23:21:05.330][self$getEntryFields()$define] Define field kegg.genes.id.
biodb.DEBUG[2024-10-16 23:21:05.332][self$getEntryFields()$define] Define field mass.csv.file.id.
biodb.DEBUG[2024-10-16 23:21:05.333][self$getEntryFields()$define] Define field mass.sqlite.id.
biodb.DEBUG[2024-10-16 23:21:05.335][self$getEntryFields()$define] Define field ncbi.gene.id.
biodb.DEBUG[2024-10-16 23:21:05.336][self$getEntryFields()$define] Define field ncbi.pubchem.comp.id.
biodb.DEBUG[2024-10-16 23:21:05.338][self$getEntryFields()$define] Define field compound.id.
biodb.DEBUG[2024-10-16 23:21:05.339][self$getEntryFields()$define] Define field average.mass.
biodb.DEBUG[2024-10-16 23:21:05.341][self$getEntryFields()$define] Define field molecular.mass.
biodb.DEBUG[2024-10-16 23:21:05.342][self$getEntryFields()$define] Define field monoisotopic.mass.
biodb.DEBUG[2024-10-16 23:21:05.344][self$getEntryFields()$define] Define field nominal.mass.
biodb.DEBUG[2024-10-16 23:21:05.345][self$getEntryFields()$define] Define field peak.attr.
biodb.DEBUG[2024-10-16 23:21:05.347][self$getEntryFields()$define] Define field peak.comp.
biodb.DEBUG[2024-10-16 23:21:05.348][self$getEntryFields()$define] Define field peak.error.ppm.
biodb.DEBUG[2024-10-16 23:21:05.350][self$getEntryFields()$define] Define field peak.formula.
biodb.DEBUG[2024-10-16 23:21:05.351][self$getEntryFields()$define] Define field peak.intensity.
biodb.DEBUG[2024-10-16 23:21:05.353][self$getEntryFields()$define] Define field peak.mass.
biodb.DEBUG[2024-10-16 23:21:05.354][self$getEntryFields()$define] Define field peak.mztheo.
biodb.DEBUG[2024-10-16 23:21:05.356][self$getEntryFields()$define] Define field peak.mzexp.
biodb.DEBUG[2024-10-16 23:21:05.358][self$getEntryFields()$define] Define field peak.mz.
biodb.DEBUG[2024-10-16 23:21:05.359][self$getEntryFields()$define] Define field peak.relative.intensity.
biodb.DEBUG[2024-10-16 23:21:05.361][self$getEntryFields()$define] Define field peaks.
biodb.DEBUG[2024-10-16 23:21:05.362][self$getEntryFields()$define] Define field chrom.col.constructor.
biodb.DEBUG[2024-10-16 23:21:05.364][self$getEntryFields()$define] Define field chrom.col.diameter.
biodb.DEBUG[2024-10-16 23:21:05.365][self$getEntryFields()$define] Define field chrom.col.id.
biodb.DEBUG[2024-10-16 23:21:05.367][self$getEntryFields()$define] Define field chrom.col.length.
biodb.DEBUG[2024-10-16 23:21:05.368][self$getEntryFields()$define] Define field chrom.col.method.protocol.
biodb.DEBUG[2024-10-16 23:21:05.370][self$getEntryFields()$define] Define field chrom.col.name.
biodb.DEBUG[2024-10-16 23:21:05.371][self$getEntryFields()$define] Define field chrom.flow.gradient.
biodb.DEBUG[2024-10-16 23:21:05.373][self$getEntryFields()$define] Define field chrom.flow.rate.
biodb.DEBUG[2024-10-16 23:21:05.374][self$getEntryFields()$define] Define field chrom.rt.
biodb.DEBUG[2024-10-16 23:21:05.376][self$getEntryFields()$define] Define field chrom.rt.max.
biodb.DEBUG[2024-10-16 23:21:05.377][self$getEntryFields()$define] Define field chrom.rt.min.
biodb.DEBUG[2024-10-16 23:21:05.379][self$getEntryFields()$define] Define field chrom.rt.unit.
biodb.DEBUG[2024-10-16 23:21:05.380][self$getEntryFields()$define] Define field chrom.solvent.
biodb.DEBUG[2024-10-16 23:21:05.382][self$getEntryFields()$define] Define field aa.seq.
biodb.DEBUG[2024-10-16 23:21:05.383][self$getEntryFields()$define] Define field aa.seq.length.
biodb.DEBUG[2024-10-16 23:21:05.385][self$getEntryFields()$define] Define field aa.seq.location.
biodb.DEBUG[2024-10-16 23:21:05.386][self$getEntryFields()$define] Define field nt.seq.
biodb.DEBUG[2024-10-16 23:21:05.388][self$getEntryFields()$define] Define field nt.seq.length.
biodb.DEBUG[2024-10-16 23:21:05.389][self$getEntryFields()$define] Define field ec.
biodb.DEBUG[2024-10-16 23:21:05.391][self$getEntryFields()$define] Define field organism.
biodb.DEBUG[2024-10-16 23:21:05.392][self$getEntryFields()$define] Define field pathway.class.
biodb.DEBUG[2024-10-16 23:21:05.394][self$getEntryFields()$define] Define field catalytic.activity.
biodb.DEBUG[2024-10-16 23:21:05.395][self$getEntryFields()$define] Define field cofactor.
biodb.DEBUG[2024-10-16 23:21:05.397][self$getEntryFields()$define] Define field gene.symbol.
biodb.DEBUG[2024-10-16 23:21:05.398][self$getEntryFields()$define] Define field charge.
biodb.DEBUG[2024-10-16 23:21:05.400][self$getEntryFields()$define] Define field comp.iupac.name.allowed.
biodb.DEBUG[2024-10-16 23:21:05.401][self$getEntryFields()$define] Define field comp.iupac.name.cas.
biodb.DEBUG[2024-10-16 23:21:05.403][self$getEntryFields()$define] Define field comp.iupac.name.pref.
biodb.DEBUG[2024-10-16 23:21:05.404][self$getEntryFields()$define] Define field comp.iupac.name.syst.
biodb.DEBUG[2024-10-16 23:21:05.406][self$getEntryFields()$define] Define field comp.iupac.name.trad.
biodb.DEBUG[2024-10-16 23:21:05.407][self$getEntryFields()$define] Define field comp.super.class.
biodb.DEBUG[2024-10-16 23:21:05.409][self$getEntryFields()$define] Define field equation.
biodb.DEBUG[2024-10-16 23:21:05.410][self$getEntryFields()$define] Define field formula.
biodb.DEBUG[2024-10-16 23:21:05.412][self$getEntryFields()$define] Define field composition.
biodb.DEBUG[2024-10-16 23:21:05.413][self$getEntryFields()$define] Define field inchi.
biodb.DEBUG[2024-10-16 23:21:05.415][self$getEntryFields()$define] Define field inchikey.
biodb.DEBUG[2024-10-16 23:21:05.417][self$getEntryFields()$define] Define field logp.
biodb.DEBUG[2024-10-16 23:21:05.418][self$getEntryFields()$define] Define field ms.level.
biodb.DEBUG[2024-10-16 23:21:05.420][self$getEntryFields()$define] Define field ms.mode.
biodb.DEBUG[2024-10-16 23:21:05.421][self$getEntryFields()$define] Define field msdev.
biodb.DEBUG[2024-10-16 23:21:05.423][self$getEntryFields()$define] Define field msdevtype.
biodb.DEBUG[2024-10-16 23:21:05.424][self$getEntryFields()$define] Define field msprecannot.
biodb.DEBUG[2024-10-16 23:21:05.426][self$getEntryFields()$define] Define field msprecmz.
biodb.DEBUG[2024-10-16 23:21:05.427][self$getEntryFields()$define] Define field mstype.
biodb.DEBUG[2024-10-16 23:21:05.429][self$getEntryFields()$define] Define field nb.compounds.
biodb.DEBUG[2024-10-16 23:21:05.430][self$getEntryFields()$define] Define field nb.peaks.
biodb.DEBUG[2024-10-16 23:21:05.432][self$getEntryFields()$define] Define field products.
biodb.DEBUG[2024-10-16 23:21:05.433][self$getEntryFields()$define] Define field smiles.
biodb.DEBUG[2024-10-16 23:21:05.435][self$getEntryFields()$define] Define field smiles.canonical.
biodb.DEBUG[2024-10-16 23:21:05.436][self$getEntryFields()$define] Define field smiles.isomeric.
biodb.DEBUG[2024-10-16 23:21:05.438][self$getEntryFields()$define] Define field substrates.
biodb.DEBUG[2024-10-16 23:21:05.439][initialize] Created successfully new BiodbMain instance.
biodb.DEBUG[2024-10-16 23:21:05.442][initialize] This is biodb version 1.12.0.
biodb.DEBUG[2024-10-16 23:21:05.443][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2024-10-16 23:21:05.444][FUN] Trying to call function notifyNewObservers on observer BiodbEntryFields.
biodb.DEBUG[2024-10-16 23:21:05.445][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-10-16 23:21:05.446][FUN] Trying to call function notifyNewObservers on observer BiodbConfig.
biodb.DEBUG[2024-10-16 23:21:05.447][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-10-16 23:21:05.448][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-10-16 23:21:05.449][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-10-16 23:21:05.450][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-10-16 23:21:05.451][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-10-16 23:21:05.452][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-10-16 23:21:05.453][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-10-16 23:21:05.454][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-10-16 23:21:05.456][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-10-16 23:21:05.457][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-10-16 23:21:05.458][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-10-16 23:21:05.459][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-10-16 23:21:05.460][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-10-16 23:21:05.467][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-10-16 23:21:05.468][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-10-16 23:21:05.469][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-10-16 23:21:05.470][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-10-16 23:21:05.471][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-10-16 23:21:05.472][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-10-16 23:21:05.473][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-10-16 23:21:05.474][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-10-16 23:21:05.475][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-10-16 23:21:05.476][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-10-16 23:21:05.477][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-10-16 23:21:05.478][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-10-16 23:21:05.479][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-10-16 23:21:05.480][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-10-16 23:21:05.481][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-10-16 23:21:05.482][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-10-16 23:21:05.483][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-10-16 23:21:05.484][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-10-16 23:21:05.485][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-10-16 23:21:05.486][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-10-16 23:21:05.487][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-10-16 23:21:05.488][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-10-16 23:21:05.489][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-10-16 23:21:05.490][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-10-16 23:21:05.491][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-10-16 23:21:05.492][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-10-16 23:21:05.493][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-10-16 23:21:05.494][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-10-16 23:21:05.496][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-10-16 23:21:05.497][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-10-16 23:21:05.498][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-10-16 23:21:05.499][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-10-16 23:21:05.500][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-10-16 23:21:05.501][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-10-16 23:21:05.502][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-10-16 23:21:05.503][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-10-16 23:21:05.504][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-10-16 23:21:05.505][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-10-16 23:21:05.506][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-10-16 23:21:05.507][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-10-16 23:21:05.508][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-10-16 23:21:05.509][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-10-16 23:21:05.510][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-10-16 23:21:05.511][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-10-16 23:21:05.512][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-10-16 23:21:05.513][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-10-16 23:21:05.514][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-10-16 23:21:05.515][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-10-16 23:21:05.516][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-10-16 23:21:05.517][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-10-16 23:21:05.518][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-10-16 23:21:05.519][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-10-16 23:21:05.520][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-10-16 23:21:05.521][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-10-16 23:21:05.522][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-10-16 23:21:05.523][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-10-16 23:21:05.524][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-10-16 23:21:05.525][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-10-16 23:21:05.526][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-10-16 23:21:05.528][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-10-16 23:21:05.529][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-10-16 23:21:05.530][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-10-16 23:21:05.531][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-10-16 23:21:05.532][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-10-16 23:21:05.533][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-10-16 23:21:05.534][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-10-16 23:21:05.535][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-10-16 23:21:05.536][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-10-16 23:21:05.537][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-10-16 23:21:05.538][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-10-16 23:21:05.539][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-10-16 23:21:05.540][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-10-16 23:21:05.541][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-10-16 23:21:05.542][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-10-16 23:21:05.543][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-10-16 23:21:05.544][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-10-16 23:21:05.545][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-10-16 23:21:05.546][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-10-16 23:21:05.547][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-10-16 23:21:05.548][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-10-16 23:21:05.549][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-10-16 23:21:05.550][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-10-16 23:21:05.551][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-10-16 23:21:05.552][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-10-16 23:21:05.553][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-10-16 23:21:05.554][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-10-16 23:21:05.555][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-10-16 23:21:05.556][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-10-16 23:21:05.557][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-10-16 23:21:05.559][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-10-16 23:21:05.560][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-10-16 23:21:05.561][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-10-16 23:21:05.562][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-10-16 23:21:05.563][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-10-16 23:21:05.564][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-10-16 23:21:05.565][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-10-16 23:21:05.566][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-10-16 23:21:05.567][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-10-16 23:21:05.568][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-10-16 23:21:05.569][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-10-16 23:21:05.570][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-10-16 23:21:05.571][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-10-16 23:21:05.572][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-10-16 23:21:05.573][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-10-16 23:21:05.574][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-10-16 23:21:05.575][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-10-16 23:21:05.576][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-10-16 23:21:06.199][biodb$loadDefinitions] Load definitions from file "E:/biocbuild/bbs-3.19-bioc/R/library/biodbChebi/definitions.yml".
biodb.DEBUG[2024-10-16 23:21:06.202][self$getDbsInfo()$define] Define connector chebi.
biodb.DEBUG[2024-10-16 23:21:06.206][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2024-10-16 23:21:06.210][self$setPropertyValue] Setting property "description" to "NA".
biodb.DEBUG[2024-10-16 23:21:06.212][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2024-10-16 23:21:06.215][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2024-10-16 23:21:06.217][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2024-10-16 23:21:06.219][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2024-10-16 23:21:06.221][self$setPropertyValue] Setting property "editable" to "FALSE".
biodb.DEBUG[2024-10-16 23:21:06.223][self$setPropertyValue] Setting property "entry.content.encoding" to "UTF-8".
biodb.DEBUG[2024-10-16 23:21:06.224][self$setPropertyValue] Setting property "entry.content.type" to "xml".
biodb.DEBUG[2024-10-16 23:21:06.226][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2024-10-16 23:21:06.228][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2024-10-16 23:21:06.230][self$setPropertyValue] Setting property "name" to "ChEBI".
biodb.DEBUG[2024-10-16 23:21:06.232][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2024-10-16 23:21:06.234][self$setPropertyValue] Setting property "parsing.expr" to "substring-after(//chebi:return/chebi:chebiId,'CHEBI:')".
biodb.DEBUG[2024-10-16 23:21:06.234][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:charge".
biodb.DEBUG[2024-10-16 23:21:06.234][self$setPropertyValue] Setting property "parsing.expr" to "c("//chebi:Formulae/chebi:source[text()='ChEBI']/../chebi:data", "(//chebi:Formulae/chebi:data)[1]")".
biodb.DEBUG[2024-10-16 23:21:06.234][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:return/chebi:inchi".
biodb.DEBUG[2024-10-16 23:21:06.234][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:return/chebi:inchiKey".
biodb.DEBUG[2024-10-16 23:21:06.234][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:DatabaseLinks/chebi:type[text()='KEGG COMPOUND accession']/../chebi:data".
biodb.DEBUG[2024-10-16 23:21:06.234][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:mass".
biodb.DEBUG[2024-10-16 23:21:06.234][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:monoisotopicMass".
biodb.DEBUG[2024-10-16 23:21:06.234][self$setPropertyValue] Setting property "parsing.expr" to "c("//chebi:chebiAsciiName", "//chebi:Synonyms/chebi:data")".
biodb.DEBUG[2024-10-16 23:21:06.234][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:return/chebi:entityStar".
biodb.DEBUG[2024-10-16 23:21:06.234][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:return/chebi:smiles".
biodb.DEBUG[2024-10-16 23:21:06.237][self$setPropertyValue] Setting property "remote" to "TRUE".
biodb.DEBUG[2024-10-16 23:21:06.238][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2024-10-16 23:21:06.238][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2024-10-16 23:21:06.238][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2024-10-16 23:21:06.240][self$setPropertyValue] Setting property "scheduler.n" to "3".
biodb.DEBUG[2024-10-16 23:21:06.241][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-10-16 23:21:06.242][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-10-16 23:21:06.243][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2024-10-16 23:21:06.244][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-10-16 23:21:06.245][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-10-16 23:21:06.246][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2024-10-16 23:21:06.248][self$setPropertyValue] Setting property "urls" to "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2024-10-16 23:21:06.248][self$setPropertyValue] Setting property "urls" to "https://www.ebi.ac.uk/webservices/chebi/2.0/".
biodb.DEBUG[2024-10-16 23:21:06.249][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-10-16 23:21:06.250][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-10-16 23:21:06.251][self$setPropertyValue] Setting property "writable" to "FALSE".
biodb.DEBUG[2024-10-16 23:21:06.252][self$setPropertyValue] Setting property "xml.ns" to "https://www.ebi.ac.uk/webservices/chebi".
biodb.DEBUG[2024-10-16 23:21:06.252][self$setPropertyValue] Setting property "xml.ns" to "http://www.w3.org/2001/XMLSchema".
biodb.DEBUG[2024-10-16 23:21:06.254][self$getEntryFields()$define] Define field chebi.id.
biodb.DEBUG[2024-10-16 23:21:06.256][self$getEntryFields()$define] Define field kegg.compound.id.
biodb.DEBUG[2024-10-16 23:21:06.257][self$getEntryFields()$define] Define field n_stars.
biodb.DEBUG[2024-10-16 23:21:06.259][self$getEntryFields()$define] Define field molecular.mass.
biodb.DEBUG[2024-10-16 23:21:06.261][self$getEntryFields()$define] Define field inchi.
biodb.DEBUG[2024-10-16 23:21:06.262][self$getEntryFields()$define] Define field inchikey.
biodb.DEBUG[2024-10-16 23:21:06.266][super$initialize] Initialize connector chebi.
biodb.DEBUG[2024-10-16 23:21:06.267][super$initialize] Register connector chebi with the request scheduler
biodb.DEBUG[2024-10-16 23:21:06.268][private$bdb$getRequestScheduler()$re ...] Register connector chebi.
biodb.DEBUG[2024-10-16 23:21:06.270][private$addConnectorRules] Create new rule for URL "www.ebi.ac.uk" of connector "chebi".
biodb.DEBUG[2024-10-16 23:21:06.272][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2024-10-16 23:21:06.273][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2024-10-16 23:21:06.274][rule$addConnector] Connector "chebi" is already listed in rule "www.ebi.ac.uk".
biodb.DEBUG[2024-10-16 23:21:06.275][biodb$getFactory()$createConn] Creating new connector chebi for database class chebi .
biodb.INFO [2024-10-16 23:21:06.277][biodb::testThat]
biodb.INFO [2024-10-16 23:21:06.279][biodb::testThat] Running test function  test.chebi.encoding.issue.in.xml  (" ChEBI encoding issue in XML is handled. ").
biodb.INFO [2024-10-16 23:21:06.281][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-10-16 23:21:06.283][biodb::testThat]
biodb.DEBUG[2024-10-16 23:21:06.289][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/webservice?wsdl".
biodb.DEBUG[2024-10-16 23:21:06.296][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-10-16 23:21:06.298][cch$loadFileContent] Trying to load 1 files from cache: [1]: "1ad88a023c4ce2bc0629db4acebeee05".
biodb.TRACE[2024-10-16 23:21:06.299][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-10-16 23:21:06.303][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/1ad88a023c4ce2bc0629db4acebeee05.content".
biodb.DEBUG[2024-10-16 23:21:06.310][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=2571&searchCategory=CHEBI ID&maximumResults=10&starsCategory=ALL".
biodb.DEBUG[2024-10-16 23:21:06.317][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-10-16 23:21:06.322][cch$loadFileContent] Trying to load 1 files from cache: [1]: "04c26672f8368e71348af4b34238160e".
biodb.TRACE[2024-10-16 23:21:06.326][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-10-16 23:21:06.328][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/04c26672f8368e71348af4b34238160e.content".
biodb.DEBUG[2024-10-16 23:21:06.335][private$loadEntries] Creating entries from ids [1]: "2571".
biodb.DEBUG[2024-10-16 23:21:06.337][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2024-10-16 23:21:06.340][cch$loadFileContent] Trying to load 1 files from cache: [1]: "2571".
biodb.TRACE[2024-10-16 23:21:06.343][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2024-10-16 23:21:06.345][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2024-10-16 23:21:06.347][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2024-10-16 23:21:06.349][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2024-10-16 23:21:06.351][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2024-10-16 23:21:06.353][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2024-10-16 23:21:06.357][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-10-16 23:21:06.359][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-10-16 23:21:06.361][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-10-16 23:21:08.010][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-10-16 23:21:08.012][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-10-16 23:21:08.013][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-10-16 23:21:08.014][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-10-16 23:21:08.016][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=2571".
biodb.DEBUG[2024-10-16 23:21:08.019][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-10-16 23:21:08.021][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-10-16 23:21:08.022][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=2571".
biodb.TRACE[2024-10-16 23:21:09.122][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=2571).
biodb.DEBUG[2024-10-16 23:21:09.930][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2024-10-16 23:21:09.933][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/52df2611aa7f9f4c531cce8ac62e2fa0.content"
biodb.TRACE[2024-10-16 23:21:09.939][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/52df2611aa7f9f4c531cce8ac62e2fa0.request"
biodb.TRACE[2024-10-16 23:21:09.943][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/2571.xml"
biodb.DEBUG[2024-10-16 23:21:09.946][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2024-10-16 23:21:09.947][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2024-10-16 23:21:09.949][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2024-10-16 23:21:09.951][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-10-16 23:21:09.952][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-10-16 23:21:09.953][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-10-16 23:21:11.455][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-10-16 23:21:11.457][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-10-16 23:21:11.459][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-10-16 23:21:11.461][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-10-16 23:21:11.470][ef$get] Asked field names are: accession.
biodb.TRACE[2024-10-16 23:21:11.473][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-10-16 23:21:11.475][ef$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:21:11.477][ef$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:21:11.480][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-10-16 23:21:11.482][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-10-16 23:21:11.484][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:21:11.486][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:21:11.488][ef$get] Asked field names are: charge.
biodb.TRACE[2024-10-16 23:21:11.490][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-10-16 23:21:11.492][ef$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:21:11.494][ef$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:21:11.497][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-10-16 23:21:11.499][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-10-16 23:21:11.500][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:21:11.502][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:21:11.504][ef$get] Asked field names are: formula.
biodb.TRACE[2024-10-16 23:21:11.506][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-10-16 23:21:11.508][ef$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:21:11.510][ef$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:21:11.513][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-10-16 23:21:11.515][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-10-16 23:21:11.517][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:21:11.518][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:21:11.521][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-10-16 23:21:11.523][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-10-16 23:21:11.524][ef$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:21:11.526][ef$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:21:11.529][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-10-16 23:21:11.531][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-10-16 23:21:11.533][ef$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:21:11.535][ef$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:21:11.537][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-10-16 23:21:11.540][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-10-16 23:21:11.541][ef$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:21:11.543][ef$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:21:11.546][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-10-16 23:21:11.548][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-10-16 23:21:11.550][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:21:11.552][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:21:11.554][ef$get] Asked field names are: mass.
biodb.TRACE[2024-10-16 23:21:11.556][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-10-16 23:21:11.558][ef$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:21:11.560][ef$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:21:11.562][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2024-10-16 23:21:11.564][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-10-16 23:21:11.566][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:21:11.568][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:21:11.570][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-10-16 23:21:11.572][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-10-16 23:21:11.574][ef$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:21:11.576][ef$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:21:11.579][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-10-16 23:21:11.581][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-10-16 23:21:11.583][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:21:11.585][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:21:11.587][ef$get] Asked field names are: name.
biodb.TRACE[2024-10-16 23:21:11.589][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-10-16 23:21:11.591][ef$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:21:11.593][ef$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:21:11.597][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-10-16 23:21:11.599][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-10-16 23:21:11.601][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:21:11.603][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:21:11.605][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-10-16 23:21:11.608][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-10-16 23:21:11.610][ef$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:21:11.611][ef$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:21:11.614][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2024-10-16 23:21:11.617][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-10-16 23:21:11.619][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:21:11.621][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:21:11.623][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-10-16 23:21:11.625][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-10-16 23:21:11.627][ef$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:21:11.629][ef$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:21:11.632][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-10-16 23:21:11.635][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-10-16 23:21:11.636][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:21:11.638][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:21:11.639][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-10-16 23:21:11.640][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-10-16 23:21:11.641][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:21:11.643][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:21:11.644][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-10-16 23:21:11.645][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-10-16 23:21:11.647][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:21:11.648][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:21:11.649][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-10-16 23:21:11.650][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-10-16 23:21:11.651][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:21:11.653][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:21:11.654][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-10-16 23:21:11.655][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-10-16 23:21:11.656][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:21:11.657][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:21:11.659][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-10-16 23:21:11.660][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-10-16 23:21:11.667][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:21:11.669][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:21:11.671][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-10-16 23:21:11.672][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-10-16 23:21:11.673][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:21:11.674][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:21:11.675][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-10-16 23:21:11.676][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-10-16 23:21:11.678][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:21:11.679][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:21:11.680][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-10-16 23:21:11.681][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-10-16 23:21:11.683][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:21:11.684][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:21:11.685][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-10-16 23:21:11.686][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-10-16 23:21:11.687][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:21:11.688][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-16 23:21:11.690][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-10-16 23:21:11.691][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-10-16 23:21:11.692][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-16 23:21:11.693][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-10-16 23:21:11.694][self$createEntryFromContent] Accession numbers: 2571.
biodb.INFO [2024-10-16 23:21:14.053][biodb$terminate] Closing BiodbMain instance...
biodb.DEBUG[2024-10-16 23:21:14.055][private$conn[[conn]]$.__enclos_env__ ...] Unregister connector chebi from the request scheduler
biodb.INFO [2024-10-16 23:21:14.056][self$deleteConn] Connector "chebi" deleted.
biodb.DEBUG[2024-10-16 23:21:14.057][notifyObservers] Notify observers for terminate.
biodb.DEBUG[2024-10-16 23:21:14.058][FUN] Trying to call function terminate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-10-16 23:21:14.059][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-10-16 23:21:14.060][FUN] Trying to call function terminate on observer BiodbEntryFields.
biodb.DEBUG[2024-10-16 23:21:14.061][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-10-16 23:21:14.062][FUN] Trying to call function terminate on observer BiodbConfig.
biodb.DEBUG[2024-10-16 23:21:14.063][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 361 ]
> 
> proc.time()
   user  system elapsed 
  25.65    1.29   88.51

Example timings

biodbChebi.Rcheck/biodbChebi-Ex.timings

nameusersystemelapsed
ChebiConn 4.33 2.3887.07
ChebiEntry0.620.030.65