Aaron Lun
| Snapshot Date: 2024-10-16 14:00 -0400 (Wed, 16 Oct 2024) |
| git_url: https://git.bioconductor.org/packages/basilisk |
| git_branch: RELEASE_3_19 |
| git_last_commit: 0a27ae6 |
| git_last_commit_date: 2024-04-30 11:20:50 -0400 (Tue, 30 Apr 2024) |
| Back to Multiple platform build/check report for BioC 3.19: simplified long |
|
This page was generated on 2024-10-18 20:41 -0400 (Fri, 18 Oct 2024).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| nebbiolo1 | Linux (Ubuntu 22.04.3 LTS) | x86_64 | 4.4.1 (2024-06-14) -- "Race for Your Life" | 4763 |
| palomino7 | Windows Server 2022 Datacenter | x64 | 4.4.1 (2024-06-14 ucrt) -- "Race for Your Life" | 4500 |
| merida1 | macOS 12.7.5 Monterey | x86_64 | 4.4.1 (2024-06-14) -- "Race for Your Life" | 4530 |
| kjohnson1 | macOS 13.6.6 Ventura | arm64 | 4.4.1 (2024-06-14) -- "Race for Your Life" | 4480 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
| Package 134/2300 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| basilisk 1.16.0 (landing page) Aaron Lun
| nebbiolo1 | Linux (Ubuntu 22.04.3 LTS) / x86_64 | OK | OK | OK | | ||||||||
| palomino7 | Windows Server 2022 Datacenter / x64 | OK | OK | OK | OK | | ||||||||
| merida1 | macOS 12.7.5 Monterey / x86_64 | OK | OK | TIMEOUT | OK | |||||||||
| kjohnson1 | macOS 13.6.6 Ventura / arm64 | OK | OK | OK | OK | | ||||||||
|
To the developers/maintainers of the basilisk package: - Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/basilisk.git to reflect on this report. See Troubleshooting Build Report for more information. - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information. |
| Package: basilisk |
| Version: 1.16.0 |
| Command: /Library/Frameworks/R.framework/Resources/bin/R CMD check --install=check:basilisk.install-out.txt --library=/Library/Frameworks/R.framework/Resources/library --no-vignettes --timings basilisk_1.16.0.tar.gz |
| StartedAt: 2024-10-17 13:10:42 -0400 (Thu, 17 Oct 2024) |
| EndedAt: 2024-10-17 13:45:51 -0400 (Thu, 17 Oct 2024) |
| EllapsedTime: 2108.7 seconds |
| RetCode: 0 |
| Status: OK |
| CheckDir: basilisk.Rcheck |
| Warnings: 0 |
##############################################################################
##############################################################################
###
### Running command:
###
### /Library/Frameworks/R.framework/Resources/bin/R CMD check --install=check:basilisk.install-out.txt --library=/Library/Frameworks/R.framework/Resources/library --no-vignettes --timings basilisk_1.16.0.tar.gz
###
##############################################################################
##############################################################################
* using log directory ‘/Users/biocbuild/bbs-3.19-bioc/meat/basilisk.Rcheck’
* using R version 4.4.1 (2024-06-14)
* using platform: aarch64-apple-darwin20
* R was compiled by
Apple clang version 14.0.0 (clang-1400.0.29.202)
GNU Fortran (GCC) 12.2.0
* running under: macOS Ventura 13.6.6
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘basilisk/DESCRIPTION’ ... OK
* this is package ‘basilisk’ version ‘1.16.0’
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... NOTE
Found the following hidden files and directories:
inst/example/.BBSoptions
These were most likely included in error. See section ‘Package
structure’ in the ‘Writing R Extensions’ manual.
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘basilisk’ can be installed ... NOTE
Found the following notes/warnings:
Non-staged installation was used
See ‘/Users/biocbuild/bbs-3.19-bioc/meat/basilisk.Rcheck/00install.out’ for details.
* checking installed package size ... OK
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking code files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking line endings in shell scripts ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... OK
Examples with CPU (user + system) or elapsed time > 5s
user system elapsed
basiliskStart 247.269 56.636 353.364
createLocalBasiliskEnv 84.444 25.071 127.701
* checking for unstated dependencies in ‘tests’ ... OK
* checking tests ...
Running ‘testthat.R’
OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE
Status: 2 NOTEs
See
‘/Users/biocbuild/bbs-3.19-bioc/meat/basilisk.Rcheck/00check.log’
for details.
basilisk.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### /Library/Frameworks/R.framework/Resources/bin/R CMD INSTALL basilisk ### ############################################################################## ############################################################################## * installing to library ‘/Library/Frameworks/R.framework/Versions/4.4-arm64/Resources/library’ * installing *source* package ‘basilisk’ ... ** using non-staged installation via StagedInstall field ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded * DONE (basilisk)
basilisk.Rcheck/tests/testthat.Rout
R version 4.4.1 (2024-06-14) -- "Race for Your Life"
Copyright (C) 2024 The R Foundation for Statistical Computing
Platform: aarch64-apple-darwin20
R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under certain conditions.
Type 'license()' or 'licence()' for distribution details.
R is a collaborative project with many contributors.
Type 'contributors()' for more information and
'citation()' on how to cite R or R packages in publications.
Type 'demo()' for some demos, 'help()' for on-line help, or
'help.start()' for an HTML browser interface to help.
Type 'q()' to quit R.
> library(testthat)
> library(basilisk)
Loading required package: reticulate
> if (.Platform$OS.type != "windows") test_check("basilisk")
Collecting package metadata (current_repodata.json): ...working... done
Solving environment: ...working... failed with repodata from current_repodata.json, will retry with next repodata source.
Collecting package metadata (repodata.json): ...working... done
Solving environment: ...working... done
## Package Plan ##
environment location: /Users/biocbuild/bbs-3.19-bioc/meat/basilisk.Rcheck/tests/testthat/install-test-client/thingo
added / updated specs:
- python=3.9.12
The following NEW packages will be INSTALLED:
bzip2 conda-forge/osx-arm64::bzip2-1.0.8-h99b78c6_7
ca-certificates conda-forge/osx-arm64::ca-certificates-2024.8.30-hf0a4a13_0
libffi conda-forge/osx-arm64::libffi-3.4.2-h3422bc3_5
libsqlite conda-forge/osx-arm64::libsqlite-3.46.1-hc14010f_0
libzlib conda-forge/osx-arm64::libzlib-1.3.1-h8359307_2
ncurses conda-forge/osx-arm64::ncurses-6.5-h7bae524_1
openssl conda-forge/osx-arm64::openssl-3.3.2-h8359307_0
pip conda-forge/noarch::pip-24.2-pyh8b19718_1
python conda-forge/osx-arm64::python-3.9.12-h14b404e_1_cpython
readline conda-forge/osx-arm64::readline-8.2-h92ec313_1
setuptools conda-forge/noarch::setuptools-75.1.0-pyhd8ed1ab_0
sqlite conda-forge/osx-arm64::sqlite-3.46.1-h3b4c4e4_0
tk conda-forge/osx-arm64::tk-8.6.13-h5083fa2_1
tzdata conda-forge/noarch::tzdata-2024b-hc8b5060_0
wheel conda-forge/noarch::wheel-0.44.0-pyhd8ed1ab_0
xz conda-forge/osx-arm64::xz-5.2.6-h57fd34a_0
Preparing transaction: ...working... done
Verifying transaction: ...working... done
Executing transaction: ...working... done
Collecting package metadata (current_repodata.json): ...working... done
Solving environment: ...working... done
==> WARNING: A newer version of conda exists. <==
current version: 4.12.0
latest version: 24.9.1
Please update conda by running
$ conda update -n base -c defaults conda
# All requested packages already installed.
Collecting package metadata (current_repodata.json): ...working... done
Solving environment: ...working... failed with initial frozen solve. Retrying with flexible solve.
Collecting package metadata (repodata.json): ...working... done
Solving environment: ...working... done
==> WARNING: A newer version of conda exists. <==
current version: 4.12.0
latest version: 24.9.1
Please update conda by running
$ conda update -n base -c defaults conda
## Package Plan ##
environment location: /Users/biocbuild/bbs-3.19-bioc/meat/basilisk.Rcheck/tests/testthat/install-test-client/thingo
added / updated specs:
- pandas=1.4.3
- python-dateutil=2.8.2
- python=3.9.12
- pytz=2022.2.1
The following NEW packages will be INSTALLED:
libblas conda-forge/osx-arm64::libblas-3.9.0-24_osxarm64_openblas
libcblas conda-forge/osx-arm64::libcblas-3.9.0-24_osxarm64_openblas
libcxx conda-forge/osx-arm64::libcxx-19.1.2-ha82da77_0
libgfortran conda-forge/osx-arm64::libgfortran-5.0.0-13_2_0_hd922786_3
libgfortran5 conda-forge/osx-arm64::libgfortran5-13.2.0-hf226fd6_3
liblapack conda-forge/osx-arm64::liblapack-3.9.0-24_osxarm64_openblas
libopenblas conda-forge/osx-arm64::libopenblas-0.3.27-openmp_h517c56d_1
llvm-openmp conda-forge/osx-arm64::llvm-openmp-19.1.2-hb52a8e5_0
numpy conda-forge/osx-arm64::numpy-1.26.4-py39h7aa2656_0
pandas conda-forge/osx-arm64::pandas-1.4.3-py39hd2dba81_0
python-dateutil conda-forge/noarch::python-dateutil-2.8.2-pyhd8ed1ab_0
python_abi conda-forge/osx-arm64::python_abi-3.9-5_cp39
pytz conda-forge/noarch::pytz-2022.2.1-pyhd8ed1ab_0
six conda-forge/noarch::six-1.16.0-pyh6c4a22f_0
Preparing transaction: ...working... done
Verifying transaction: ...working... done
Executing transaction: ...working... done
Collecting package metadata (current_repodata.json): ...working... done
Solving environment: ...working... failed with repodata from current_repodata.json, will retry with next repodata source.
Collecting package metadata (repodata.json): ...working... done
Solving environment: ...working... done
## Package Plan ##
environment location: /Users/biocbuild/bbs-3.19-bioc/meat/basilisk.Rcheck/tests/testthat/install-test-client/thingo
added / updated specs:
- python=3.9.12
The following NEW packages will be INSTALLED:
bzip2 conda-forge/osx-arm64::bzip2-1.0.8-h99b78c6_7
ca-certificates conda-forge/osx-arm64::ca-certificates-2024.8.30-hf0a4a13_0
libffi conda-forge/osx-arm64::libffi-3.4.2-h3422bc3_5
libsqlite conda-forge/osx-arm64::libsqlite-3.46.1-hc14010f_0
libzlib conda-forge/osx-arm64::libzlib-1.3.1-h8359307_2
ncurses conda-forge/osx-arm64::ncurses-6.5-h7bae524_1
openssl conda-forge/osx-arm64::openssl-3.3.2-h8359307_0
pip conda-forge/noarch::pip-24.2-pyh8b19718_1
python conda-forge/osx-arm64::python-3.9.12-h14b404e_1_cpython
readline conda-forge/osx-arm64::readline-8.2-h92ec313_1
setuptools conda-forge/noarch::setuptools-75.1.0-pyhd8ed1ab_0
sqlite conda-forge/osx-arm64::sqlite-3.46.1-h3b4c4e4_0
tk conda-forge/osx-arm64::tk-8.6.13-h5083fa2_1
tzdata conda-forge/noarch::tzdata-2024b-hc8b5060_0
wheel conda-forge/noarch::wheel-0.44.0-pyhd8ed1ab_0
xz conda-forge/osx-arm64::xz-5.2.6-h57fd34a_0
Preparing transaction: ...working... done
Verifying transaction: ...working... done
Executing transaction: ...working... done
Collecting package metadata (current_repodata.json): ...working... done
Solving environment: ...working... done
==> WARNING: A newer version of conda exists. <==
current version: 4.12.0
latest version: 24.9.1
Please update conda by running
$ conda update -n base -c defaults conda
# All requested packages already installed.
Collecting package metadata (current_repodata.json): ...working... done
Solving environment: ...working... failed with initial frozen solve. Retrying with flexible solve.
Collecting package metadata (repodata.json): ...working... done
Solving environment: ...working... done
==> WARNING: A newer version of conda exists. <==
current version: 4.12.0
latest version: 24.9.1
Please update conda by running
$ conda update -n base -c defaults conda
## Package Plan ##
environment location: /Users/biocbuild/bbs-3.19-bioc/meat/basilisk.Rcheck/tests/testthat/install-test-client/thingo
added / updated specs:
- pandas=1.4.2
- python-dateutil=2.8.1
- python=3.9.12
- pytz=2022.1
The following NEW packages will be INSTALLED:
libblas conda-forge/osx-arm64::libblas-3.9.0-24_osxarm64_openblas
libcblas conda-forge/osx-arm64::libcblas-3.9.0-24_osxarm64_openblas
libcxx conda-forge/osx-arm64::libcxx-19.1.2-ha82da77_0
libgfortran conda-forge/osx-arm64::libgfortran-5.0.0-13_2_0_hd922786_3
libgfortran5 conda-forge/osx-arm64::libgfortran5-13.2.0-hf226fd6_3
liblapack conda-forge/osx-arm64::liblapack-3.9.0-24_osxarm64_openblas
libopenblas conda-forge/osx-arm64::libopenblas-0.3.27-openmp_h517c56d_1
llvm-openmp conda-forge/osx-arm64::llvm-openmp-19.1.2-hb52a8e5_0
numpy conda-forge/osx-arm64::numpy-1.26.4-py39h7aa2656_0
pandas conda-forge/osx-arm64::pandas-1.4.2-py39hd2dba81_2
python-dateutil conda-forge/noarch::python-dateutil-2.8.1-py_0
python_abi conda-forge/osx-arm64::python_abi-3.9-5_cp39
pytz conda-forge/noarch::pytz-2022.1-pyhd8ed1ab_0
six conda-forge/noarch::six-1.16.0-pyh6c4a22f_0
Preparing transaction: ...working... done
Verifying transaction: ...working... done
Executing transaction: ...working... done
Collecting package metadata (current_repodata.json): ...working... done
Solving environment: ...working... failed with repodata from current_repodata.json, will retry with next repodata source.
Collecting package metadata (repodata.json): ...working... done
Solving environment: ...working... done
## Package Plan ##
environment location: /Users/biocbuild/bbs-3.19-bioc/meat/basilisk.Rcheck/tests/testthat/install-test-client/thingo
added / updated specs:
- python=3.9.12
The following NEW packages will be INSTALLED:
bzip2 conda-forge/osx-arm64::bzip2-1.0.8-h99b78c6_7
ca-certificates conda-forge/osx-arm64::ca-certificates-2024.8.30-hf0a4a13_0
libffi conda-forge/osx-arm64::libffi-3.4.2-h3422bc3_5
libsqlite conda-forge/osx-arm64::libsqlite-3.46.1-hc14010f_0
libzlib conda-forge/osx-arm64::libzlib-1.3.1-h8359307_2
ncurses conda-forge/osx-arm64::ncurses-6.5-h7bae524_1
openssl conda-forge/osx-arm64::openssl-3.3.2-h8359307_0
pip conda-forge/noarch::pip-24.2-pyh8b19718_1
python conda-forge/osx-arm64::python-3.9.12-h14b404e_1_cpython
readline conda-forge/osx-arm64::readline-8.2-h92ec313_1
setuptools conda-forge/noarch::setuptools-75.1.0-pyhd8ed1ab_0
sqlite conda-forge/osx-arm64::sqlite-3.46.1-h3b4c4e4_0
tk conda-forge/osx-arm64::tk-8.6.13-h5083fa2_1
tzdata conda-forge/noarch::tzdata-2024b-hc8b5060_0
wheel conda-forge/noarch::wheel-0.44.0-pyhd8ed1ab_0
xz conda-forge/osx-arm64::xz-5.2.6-h57fd34a_0
Preparing transaction: ...working... done
Verifying transaction: ...working... done
Executing transaction: ...working... done
Collecting package metadata (current_repodata.json): ...working... done
Solving environment: ...working... done
==> WARNING: A newer version of conda exists. <==
current version: 4.12.0
latest version: 24.9.1
Please update conda by running
$ conda update -n base -c defaults conda
# All requested packages already installed.
Collecting package metadata (current_repodata.json): ...working... done
Solving environment: ...working... done
==> WARNING: A newer version of conda exists. <==
current version: 4.12.0
latest version: 24.9.1
Please update conda by running
$ conda update -n base -c defaults conda
## Package Plan ##
environment location: /Users/biocbuild/bbs-3.19-bioc/meat/basilisk.Rcheck/tests/testthat/install-test-client/thingo
added / updated specs:
- python-dateutil=2.8.1
- python=3.9.12
- pytz=2022.1
The following NEW packages will be INSTALLED:
python-dateutil conda-forge/noarch::python-dateutil-2.8.1-py_0
pytz conda-forge/noarch::pytz-2022.1-pyhd8ed1ab_0
six conda-forge/noarch::six-1.16.0-pyh6c4a22f_0
Preparing transaction: ...working... done
Verifying transaction: ...working... done
Executing transaction: ...working... done
Collecting pandas==1.4.2
Using cached pandas-1.4.2-cp39-cp39-macosx_11_0_arm64.whl.metadata (12 kB)
Requirement already satisfied: python-dateutil>=2.8.1 in ./install-test-client/thingo/lib/python3.9/site-packages (from pandas==1.4.2) (2.8.1)
Requirement already satisfied: pytz>=2020.1 in ./install-test-client/thingo/lib/python3.9/site-packages (from pandas==1.4.2) (2022.1)
Collecting numpy>=1.20.0 (from pandas==1.4.2)
Using cached numpy-2.0.2-cp39-cp39-macosx_11_0_arm64.whl.metadata (60 kB)
Requirement already satisfied: six>=1.5 in ./install-test-client/thingo/lib/python3.9/site-packages (from python-dateutil>=2.8.1->pandas==1.4.2) (1.16.0)
Using cached pandas-1.4.2-cp39-cp39-macosx_11_0_arm64.whl (10.1 MB)
Using cached numpy-2.0.2-cp39-cp39-macosx_11_0_arm64.whl (13.7 MB)
Installing collected packages: numpy, pandas
Successfully installed numpy-2.0.2 pandas-1.4.2
Collecting package metadata (current_repodata.json): ...working... done
Solving environment: ...working... failed with repodata from current_repodata.json, will retry with next repodata source.
Collecting package metadata (repodata.json): ...working... done
Solving environment: ...working... done
## Package Plan ##
environment location: /Users/biocbuild/bbs-3.19-bioc/meat/basilisk.Rcheck/tests/testthat/install-test-client/thingo
added / updated specs:
- python=3.9.12
The following NEW packages will be INSTALLED:
bzip2 conda-forge/osx-arm64::bzip2-1.0.8-h99b78c6_7
ca-certificates conda-forge/osx-arm64::ca-certificates-2024.8.30-hf0a4a13_0
libffi conda-forge/osx-arm64::libffi-3.4.2-h3422bc3_5
libsqlite conda-forge/osx-arm64::libsqlite-3.46.1-hc14010f_0
libzlib conda-forge/osx-arm64::libzlib-1.3.1-h8359307_2
ncurses conda-forge/osx-arm64::ncurses-6.5-h7bae524_1
openssl conda-forge/osx-arm64::openssl-3.3.2-h8359307_0
pip conda-forge/noarch::pip-24.2-pyh8b19718_1
python conda-forge/osx-arm64::python-3.9.12-h14b404e_1_cpython
readline conda-forge/osx-arm64::readline-8.2-h92ec313_1
setuptools conda-forge/noarch::setuptools-75.1.0-pyhd8ed1ab_0
sqlite conda-forge/osx-arm64::sqlite-3.46.1-h3b4c4e4_0
tk conda-forge/osx-arm64::tk-8.6.13-h5083fa2_1
tzdata conda-forge/noarch::tzdata-2024b-hc8b5060_0
wheel conda-forge/noarch::wheel-0.44.0-pyhd8ed1ab_0
xz conda-forge/osx-arm64::xz-5.2.6-h57fd34a_0
Preparing transaction: ...working... done
Verifying transaction: ...working... done
Executing transaction: ...working... done
Collecting package metadata (current_repodata.json): ...working... done
Solving environment: ...working... done
==> WARNING: A newer version of conda exists. <==
current version: 4.12.0
latest version: 24.9.1
Please update conda by running
$ conda update -n base -c defaults conda
# All requested packages already installed.
Collecting package metadata (current_repodata.json): ...working... done
Solving environment: ...working... done
==> WARNING: A newer version of conda exists. <==
current version: 4.12.0
latest version: 24.9.1
Please update conda by running
$ conda update -n base -c defaults conda
# All requested packages already installed.
Processing /Library/Frameworks/R.framework/Versions/4.4-arm64/Resources/library/basilisk/example/inst/test_dummy
Preparing metadata (setup.py): started
Preparing metadata (setup.py): finished with status 'done'
Building wheels for collected packages: test_dummy
Building wheel for test_dummy (setup.py): started
Building wheel for test_dummy (setup.py): finished with status 'done'
Created wheel for test_dummy: filename=test_dummy-0.1-py3-none-any.whl size=1279 sha256=00215618d34c5282d74acff23de6dddf00c6920bfcb32e567f09b04d08eb856b
Stored in directory: /private/tmp/pip-ephem-wheel-cache-2b18i2gn/wheels/6f/cc/56/b33becf13885d14402abe4a5cfb803e0ce28459cb5f2bd59a3
Successfully built test_dummy
Installing collected packages: test_dummy
Successfully installed test_dummy-0.1
Collecting package metadata (current_repodata.json): ...working... done
Solving environment: ...working... failed with repodata from current_repodata.json, will retry with next repodata source.
Collecting package metadata (repodata.json): ...working... done
Solving environment: ...working... done
## Package Plan ##
environment location: /Users/biocbuild/bbs-3.19-bioc/meat/basilisk.Rcheck/tests/testthat/install-test-client/thingo
added / updated specs:
- python=3.9.12
The following NEW packages will be INSTALLED:
bzip2 conda-forge/osx-arm64::bzip2-1.0.8-h99b78c6_7
ca-certificates conda-forge/osx-arm64::ca-certificates-2024.8.30-hf0a4a13_0
libffi conda-forge/osx-arm64::libffi-3.4.2-h3422bc3_5
libsqlite conda-forge/osx-arm64::libsqlite-3.46.1-hc14010f_0
libzlib conda-forge/osx-arm64::libzlib-1.3.1-h8359307_2
ncurses conda-forge/osx-arm64::ncurses-6.5-h7bae524_1
openssl conda-forge/osx-arm64::openssl-3.3.2-h8359307_0
pip conda-forge/noarch::pip-24.2-pyh8b19718_1
python conda-forge/osx-arm64::python-3.9.12-h14b404e_1_cpython
readline conda-forge/osx-arm64::readline-8.2-h92ec313_1
setuptools conda-forge/noarch::setuptools-75.1.0-pyhd8ed1ab_0
sqlite conda-forge/osx-arm64::sqlite-3.46.1-h3b4c4e4_0
tk conda-forge/osx-arm64::tk-8.6.13-h5083fa2_1
tzdata conda-forge/noarch::tzdata-2024b-hc8b5060_0
wheel conda-forge/noarch::wheel-0.44.0-pyhd8ed1ab_0
xz conda-forge/osx-arm64::xz-5.2.6-h57fd34a_0
Preparing transaction: ...working... done
Verifying transaction: ...working... done
Executing transaction: ...working... done
Collecting package metadata (current_repodata.json): ...working... done
Solving environment: ...working... done
==> WARNING: A newer version of conda exists. <==
current version: 4.12.0
latest version: 24.9.1
Please update conda by running
$ conda update -n base -c defaults conda
# All requested packages already installed.
Collecting package metadata (current_repodata.json): ...working... done
Solving environment: ...working... failed with initial frozen solve. Retrying with flexible solve.
Collecting package metadata (repodata.json): ...working... done
Solving environment: ...working... failed with initial frozen solve. Retrying with flexible solve.
PackagesNotFoundError: The following packages are not available from current channels:
- whheeeeeeeeeeeeeeeeee=0.0.1
Current channels:
- https://conda.anaconda.org/conda-forge/osx-arm64
- https://conda.anaconda.org/conda-forge/noarch
- https://repo.anaconda.com/pkgs/main/osx-arm64
- https://repo.anaconda.com/pkgs/main/noarch
- https://repo.anaconda.com/pkgs/r/osx-arm64
- https://repo.anaconda.com/pkgs/r/noarch
To search for alternate channels that may provide the conda package you're
looking for, navigate to
https://anaconda.org
and use the search bar at the top of the page.
trying URL 'https://repo.anaconda.com/miniconda/Miniconda3-py39_4.12.0-MacOSX-arm64.sh'
Content type 'application/x-sh' length 54697912 bytes (52.2 MB)
==================================================
downloaded 52.2 MB
PREFIX=/tmp/RtmpeBjUFX/file11b3536a8983d/1.16.0/0
Unpacking payload ...
0%| | 0/35 [00:00<?, ?it/s]
Extracting : cffi-1.15.0-py39h22df2f2_1.conda: 0%| | 0/35 [00:00<?, ?it/s]
Extracting : cffi-1.15.0-py39h22df2f2_1.conda: 3%|▎ | 1/35 [00:00<00:18, 1.81it/s]
Extracting : sqlite-3.38.3-h1058600_0.conda: 3%|▎ | 1/35 [00:00<00:18, 1.81it/s]
Extracting : cryptography-37.0.1-py39h834c97f_0.conda: 6%|▌ | 2/35 [00:00<00:18, 1.81it/s]
Extracting : cryptography-37.0.1-py39h834c97f_0.conda: 9%|▊ | 3/35 [00:00<00:08, 3.62it/s]
Extracting : requests-2.27.1-pyhd3eb1b0_0.conda: 9%|▊ | 3/35 [00:00<00:08, 3.62it/s]
Extracting : python.app-3-py39h1a28f6b_0.conda: 11%|█▏ | 4/35 [00:00<00:08, 3.62it/s]
Extracting : zlib-1.2.12-h5a0b063_2.conda: 14%|█▍ | 5/35 [00:00<00:08, 3.62it/s]
Extracting : pysocks-1.7.1-py39hca03da5_0.conda: 17%|█▋ | 6/35 [00:00<00:08, 3.62it/s]
Extracting : tk-8.6.11-hb8d0fd4_1.conda: 20%|██ | 7/35 [00:01<00:07, 3.62it/s]
Extracting : tk-8.6.11-hb8d0fd4_1.conda: 23%|██▎ | 8/35 [00:01<00:02, 10.82it/s]
Extracting : python-3.9.12-hbdb9e5c_0.conda: 23%|██▎ | 8/35 [00:02<00:02, 10.82it/s]
Extracting : certifi-2022.5.18.1-py39hca03da5_0.conda: 26%|██▌ | 9/35 [00:02<00:02, 10.82it/s]
Extracting : ca-certificates-2022.4.26-hca03da5_0.conda: 29%|██▊ | 10/35 [00:02<00:02, 10.82it/s]
Extracting : ca-certificates-2022.4.26-hca03da5_0.conda: 31%|███▏ | 11/35 [00:02<00:04, 4.83it/s]
Extracting : six-1.16.0-pyhd3eb1b0_1.conda: 31%|███▏ | 11/35 [00:02<00:04, 4.83it/s]
Extracting : readline-8.1.2-h1a28f6b_1.conda: 34%|███▍ | 12/35 [00:02<00:04, 4.83it/s]
Extracting : xz-5.2.5-h1a28f6b_1.conda: 37%|███▋ | 13/35 [00:02<00:04, 4.83it/s]
Extracting : wheel-0.37.1-pyhd3eb1b0_0.conda: 40%|████ | 14/35 [00:02<00:04, 4.83it/s]
Extracting : charset-normalizer-2.0.4-pyhd3eb1b0_0.conda: 43%|████▎ | 15/35 [00:02<00:04, 4.83it/s]
Extracting : brotlipy-0.7.0-py39h1a28f6b_1002.conda: 46%|████▌ | 16/35 [00:02<00:03, 4.83it/s]
Extracting : pycosat-0.6.3-py39h1a28f6b_0.conda: 49%|████▊ | 17/35 [00:02<00:03, 4.83it/s]
Extracting : ncurses-6.3-h1a28f6b_2.conda: 51%|█████▏ | 18/35 [00:02<00:03, 4.83it/s]
Extracting : libcxx-12.0.0-hf6beb65_1.conda: 54%|█████▍ | 19/35 [00:02<00:03, 4.83it/s]
Extracting : pycparser-2.21-pyhd3eb1b0_0.conda: 57%|█████▋ | 20/35 [00:02<00:03, 4.83it/s]
Extracting : libffi-3.4.2-hc377ac9_2.conda: 60%|██████ | 21/35 [00:02<00:02, 4.83it/s]
Extracting : pyopenssl-22.0.0-pyhd3eb1b0_0.conda: 63%|██████▎ | 22/35 [00:02<00:02, 4.83it/s]
Extracting : conda-4.12.0-py39hca03da5_0.conda: 66%|██████▌ | 23/35 [00:02<00:02, 4.83it/s]
Extracting : conda-4.12.0-py39hca03da5_0.conda: 69%|██████▊ | 24/35 [00:02<00:00, 11.27it/s]
Extracting : urllib3-1.26.9-py39hca03da5_0.conda: 69%|██████▊ | 24/35 [00:02<00:00, 11.27it/s]
Extracting : openssl-1.1.1o-h1a28f6b_0.conda: 71%|███████▏ | 25/35 [00:02<00:00, 11.27it/s]
Extracting : tqdm-4.64.0-py39hca03da5_0.conda: 74%|███████▍ | 26/35 [00:02<00:00, 11.27it/s]
Extracting : pip-21.2.4-py39hca03da5_0.conda: 77%|███████▋ | 27/35 [00:02<00:00, 11.27it/s]
Extracting : conda-content-trust-0.1.1-pyhd3eb1b0_0.conda: 80%|████████ | 28/35 [00:02<00:00, 11.27it/s]
Extracting : idna-3.3-pyhd3eb1b0_0.conda: 83%|████████▎ | 29/35 [00:02<00:00, 11.27it/s]
Extracting : conda-package-handling-1.8.1-py39h1a28f6b_0.conda: 86%|████████▌ | 30/35 [00:02<00:00, 11.27it/s]
Extracting : tzdata-2022a-hda174b7_0.conda: 89%|████████▊ | 31/35 [00:02<00:00, 11.27it/s]
Extracting : yaml-0.2.5-h1a28f6b_0.conda: 91%|█████████▏| 32/35 [00:02<00:00, 11.27it/s]
Extracting : setuptools-61.2.0-py39hca03da5_0.conda: 94%|█████████▍| 33/35 [00:02<00:00, 11.27it/s]
Extracting : ruamel_yaml-0.15.100-py39h1a28f6b_0.conda: 97%|█████████▋| 34/35 [00:02<00:00, 11.27it/s]
Collecting package metadata (current_repodata.json): ...working... done
Solving environment: ...working... done
## Package Plan ##
environment location: /tmp/RtmpeBjUFX/file11b3536a8983d/1.16.0/0
added / updated specs:
- brotlipy==0.7.0=py39h1a28f6b_1002
- ca-certificates==2022.4.26=hca03da5_0
- certifi==2022.5.18.1=py39hca03da5_0
- cffi==1.15.0=py39h22df2f2_1
- charset-normalizer==2.0.4=pyhd3eb1b0_0
- conda-content-trust==0.1.1=pyhd3eb1b0_0
- conda-package-handling==1.8.1=py39h1a28f6b_0
- conda==4.12.0=py39hca03da5_0
- cryptography==37.0.1=py39h834c97f_0
- idna==3.3=pyhd3eb1b0_0
- libcxx==12.0.0=hf6beb65_1
- libffi==3.4.2=hc377ac9_2
- ncurses==6.3=h1a28f6b_2
- openssl==1.1.1o=h1a28f6b_0
- pip==21.2.4=py39hca03da5_0
- pycosat==0.6.3=py39h1a28f6b_0
- pycparser==2.21=pyhd3eb1b0_0
- pyopenssl==22.0.0=pyhd3eb1b0_0
- pysocks==1.7.1=py39hca03da5_0
- python.app==3=py39h1a28f6b_0
- python==3.9.12=hbdb9e5c_0
- readline==8.1.2=h1a28f6b_1
- requests==2.27.1=pyhd3eb1b0_0
- ruamel_yaml==0.15.100=py39h1a28f6b_0
- setuptools==61.2.0=py39hca03da5_0
- six==1.16.0=pyhd3eb1b0_1
- sqlite==3.38.3=h1058600_0
- tk==8.6.11=hb8d0fd4_1
- tqdm==4.64.0=py39hca03da5_0
- tzdata==2022a=hda174b7_0
- urllib3==1.26.9=py39hca03da5_0
- wheel==0.37.1=pyhd3eb1b0_0
- xz==5.2.5=h1a28f6b_1
- yaml==0.2.5=h1a28f6b_0
- zlib==1.2.12=h5a0b063_2
The following NEW packages will be INSTALLED:
brotlipy pkgs/main/osx-arm64::brotlipy-0.7.0-py39h1a28f6b_1002
ca-certificates pkgs/main/osx-arm64::ca-certificates-2022.4.26-hca03da5_0
certifi pkgs/main/osx-arm64::certifi-2022.5.18.1-py39hca03da5_0
cffi pkgs/main/osx-arm64::cffi-1.15.0-py39h22df2f2_1
charset-normalizer pkgs/main/noarch::charset-normalizer-2.0.4-pyhd3eb1b0_0
conda pkgs/main/osx-arm64::conda-4.12.0-py39hca03da5_0
conda-content-tru~ pkgs/main/noarch::conda-content-trust-0.1.1-pyhd3eb1b0_0
conda-package-han~ pkgs/main/osx-arm64::conda-package-handling-1.8.1-py39h1a28f6b_0
cryptography pkgs/main/osx-arm64::cryptography-37.0.1-py39h834c97f_0
idna pkgs/main/noarch::idna-3.3-pyhd3eb1b0_0
libcxx pkgs/main/osx-arm64::libcxx-12.0.0-hf6beb65_1
libffi pkgs/main/osx-arm64::libffi-3.4.2-hc377ac9_2
ncurses pkgs/main/osx-arm64::ncurses-6.3-h1a28f6b_2
openssl pkgs/main/osx-arm64::openssl-1.1.1o-h1a28f6b_0
pip pkgs/main/osx-arm64::pip-21.2.4-py39hca03da5_0
pycosat pkgs/main/osx-arm64::pycosat-0.6.3-py39h1a28f6b_0
pycparser pkgs/main/noarch::pycparser-2.21-pyhd3eb1b0_0
pyopenssl pkgs/main/noarch::pyopenssl-22.0.0-pyhd3eb1b0_0
pysocks pkgs/main/osx-arm64::pysocks-1.7.1-py39hca03da5_0
python pkgs/main/osx-arm64::python-3.9.12-hbdb9e5c_0
python.app pkgs/main/osx-arm64::python.app-3-py39h1a28f6b_0
readline pkgs/main/osx-arm64::readline-8.1.2-h1a28f6b_1
requests pkgs/main/noarch::requests-2.27.1-pyhd3eb1b0_0
ruamel_yaml pkgs/main/osx-arm64::ruamel_yaml-0.15.100-py39h1a28f6b_0
setuptools pkgs/main/osx-arm64::setuptools-61.2.0-py39hca03da5_0
six pkgs/main/noarch::six-1.16.0-pyhd3eb1b0_1
sqlite pkgs/main/osx-arm64::sqlite-3.38.3-h1058600_0
tk pkgs/main/osx-arm64::tk-8.6.11-hb8d0fd4_1
tqdm pkgs/main/osx-arm64::tqdm-4.64.0-py39hca03da5_0
tzdata pkgs/main/noarch::tzdata-2022a-hda174b7_0
urllib3 pkgs/main/osx-arm64::urllib3-1.26.9-py39hca03da5_0
wheel pkgs/main/noarch::wheel-0.37.1-pyhd3eb1b0_0
xz pkgs/main/osx-arm64::xz-5.2.5-h1a28f6b_1
yaml pkgs/main/osx-arm64::yaml-0.2.5-h1a28f6b_0
zlib pkgs/main/osx-arm64::zlib-1.2.12-h5a0b063_2
Preparing transaction: ...working... done
Executing transaction: ...working...
done
installation finished.
Collecting package metadata (current_repodata.json): ...working... done
Solving environment: ...working... failed with repodata from current_repodata.json, will retry with next repodata source.
Collecting package metadata (repodata.json): ...working... done
Solving environment: ...working... done
## Package Plan ##
environment location: /private/tmp/RtmpeBjUFX/file11b3536a8983d/1.16.0/basilisk.utils/1.16.0/test
added / updated specs:
- python=3.9.12
The following packages will be downloaded:
package | build
---------------------------|-----------------
bzip2-1.0.8 | h99b78c6_7 120 KB conda-forge
ca-certificates-2024.8.30 | hf0a4a13_0 155 KB conda-forge
libffi-3.4.2 | h3422bc3_5 38 KB conda-forge
libsqlite-3.46.1 | hc14010f_0 810 KB conda-forge
libzlib-1.3.1 | h8359307_2 45 KB conda-forge
ncurses-6.5 | h7bae524_1 784 KB conda-forge
openssl-3.3.2 | h8359307_0 2.7 MB conda-forge
pip-24.2 | pyh8b19718_1 1.2 MB conda-forge
python-3.9.12 |h14b404e_1_cpython 12.3 MB conda-forge
readline-8.2 | h92ec313_1 244 KB conda-forge
setuptools-75.1.0 | pyhd8ed1ab_0 759 KB conda-forge
sqlite-3.46.1 | h3b4c4e4_0 803 KB conda-forge
tk-8.6.13 | h5083fa2_1 3.0 MB conda-forge
tzdata-2024b | hc8b5060_0 119 KB conda-forge
wheel-0.44.0 | pyhd8ed1ab_0 57 KB conda-forge
xz-5.2.6 | h57fd34a_0 230 KB conda-forge
------------------------------------------------------------
Total: 23.3 MB
The following NEW packages will be INSTALLED:
bzip2 conda-forge/osx-arm64::bzip2-1.0.8-h99b78c6_7
ca-certificates conda-forge/osx-arm64::ca-certificates-2024.8.30-hf0a4a13_0
libffi conda-forge/osx-arm64::libffi-3.4.2-h3422bc3_5
libsqlite conda-forge/osx-arm64::libsqlite-3.46.1-hc14010f_0
libzlib conda-forge/osx-arm64::libzlib-1.3.1-h8359307_2
ncurses conda-forge/osx-arm64::ncurses-6.5-h7bae524_1
openssl conda-forge/osx-arm64::openssl-3.3.2-h8359307_0
pip conda-forge/noarch::pip-24.2-pyh8b19718_1
python conda-forge/osx-arm64::python-3.9.12-h14b404e_1_cpython
readline conda-forge/osx-arm64::readline-8.2-h92ec313_1
setuptools conda-forge/noarch::setuptools-75.1.0-pyhd8ed1ab_0
sqlite conda-forge/osx-arm64::sqlite-3.46.1-h3b4c4e4_0
tk conda-forge/osx-arm64::tk-8.6.13-h5083fa2_1
tzdata conda-forge/noarch::tzdata-2024b-hc8b5060_0
wheel conda-forge/noarch::wheel-0.44.0-pyhd8ed1ab_0
xz conda-forge/osx-arm64::xz-5.2.6-h57fd34a_0
Preparing transaction: ...working... done
Verifying transaction: ...working... done
Executing transaction: ...working... done
Collecting package metadata (current_repodata.json): ...working... done
Solving environment: ...working... done
==> WARNING: A newer version of conda exists. <==
current version: 4.12.0
latest version: 24.9.1
Please update conda by running
$ conda update -n base -c defaults conda
# All requested packages already installed.
Collecting package metadata (current_repodata.json): ...working... done
Solving environment: ...working... failed with initial frozen solve. Retrying with flexible solve.
Collecting package metadata (repodata.json): ...working... done
Solving environment: ...working... done
==> WARNING: A newer version of conda exists. <==
current version: 4.12.0
latest version: 24.9.1
Please update conda by running
$ conda update -n base -c defaults conda
## Package Plan ##
environment location: /private/tmp/RtmpeBjUFX/file11b3536a8983d/1.16.0/basilisk.utils/1.16.0/test
added / updated specs:
- pandas=1.4.3
- python=3.9.12
The following packages will be downloaded:
package | build
---------------------------|-----------------
libblas-3.9.0 |24_osxarm64_openblas 15 KB conda-forge
libcblas-3.9.0 |24_osxarm64_openblas 15 KB conda-forge
libcxx-19.1.2 | ha82da77_0 509 KB conda-forge
libgfortran-5.0.0 |13_2_0_hd922786_3 108 KB conda-forge
libgfortran5-13.2.0 | hf226fd6_3 974 KB conda-forge
liblapack-3.9.0 |24_osxarm64_openblas 15 KB conda-forge
libopenblas-0.3.27 |openmp_h517c56d_1 2.8 MB conda-forge
llvm-openmp-19.1.2 | hb52a8e5_0 274 KB conda-forge
numpy-1.26.4 | py39h7aa2656_0 5.2 MB conda-forge
pandas-1.4.3 | py39hd2dba81_0 11.5 MB conda-forge
python-dateutil-2.9.0 | pyhd8ed1ab_0 218 KB conda-forge
python_abi-3.9 | 5_cp39 6 KB conda-forge
pytz-2024.2 | pyhd8ed1ab_0 183 KB conda-forge
six-1.16.0 | pyh6c4a22f_0 14 KB conda-forge
------------------------------------------------------------
Total: 21.8 MB
The following NEW packages will be INSTALLED:
libblas conda-forge/osx-arm64::libblas-3.9.0-24_osxarm64_openblas
libcblas conda-forge/osx-arm64::libcblas-3.9.0-24_osxarm64_openblas
libcxx conda-forge/osx-arm64::libcxx-19.1.2-ha82da77_0
libgfortran conda-forge/osx-arm64::libgfortran-5.0.0-13_2_0_hd922786_3
libgfortran5 conda-forge/osx-arm64::libgfortran5-13.2.0-hf226fd6_3
liblapack conda-forge/osx-arm64::liblapack-3.9.0-24_osxarm64_openblas
libopenblas conda-forge/osx-arm64::libopenblas-0.3.27-openmp_h517c56d_1
llvm-openmp conda-forge/osx-arm64::llvm-openmp-19.1.2-hb52a8e5_0
numpy conda-forge/osx-arm64::numpy-1.26.4-py39h7aa2656_0
pandas conda-forge/osx-arm64::pandas-1.4.3-py39hd2dba81_0
python-dateutil conda-forge/noarch::python-dateutil-2.9.0-pyhd8ed1ab_0
python_abi conda-forge/osx-arm64::python_abi-3.9-5_cp39
pytz conda-forge/noarch::pytz-2024.2-pyhd8ed1ab_0
six conda-forge/noarch::six-1.16.0-pyh6c4a22f_0
Downloading and Extracting Packages
llvm-openmp-19.1.2 | 274 KB | | 0%
llvm-openmp-19.1.2 | 274 KB | 5 | 6%
llvm-openmp-19.1.2 | 274 KB | ########## | 100%
llvm-openmp-19.1.2 | 274 KB | ########## | 100%
liblapack-3.9.0 | 15 KB | | 0%
liblapack-3.9.0 | 15 KB | ########## | 100%
liblapack-3.9.0 | 15 KB | ########## | 100%
pytz-2024.2 | 183 KB | | 0%
pytz-2024.2 | 183 KB | ########## | 100%
pytz-2024.2 | 183 KB | ########## | 100%
libopenblas-0.3.27 | 2.8 MB | | 0%
libopenblas-0.3.27 | 2.8 MB | #7 | 18%
libopenblas-0.3.27 | 2.8 MB | ########## | 100%
libopenblas-0.3.27 | 2.8 MB | ########## | 100%
libcblas-3.9.0 | 15 KB | | 0%
libcblas-3.9.0 | 15 KB | ########## | 100%
libcblas-3.9.0 | 15 KB | ########## | 100%
python_abi-3.9 | 6 KB | | 0%
python_abi-3.9 | 6 KB | ########## | 100%
python_abi-3.9 | 6 KB | ########## | 100%
libcxx-19.1.2 | 509 KB | | 0%
libcxx-19.1.2 | 509 KB | ########## | 100%
libcxx-19.1.2 | 509 KB | ########## | 100%
numpy-1.26.4 | 5.2 MB | | 0%
numpy-1.26.4 | 5.2 MB | ########## | 100%
numpy-1.26.4 | 5.2 MB | ########## | 100%
pandas-1.4.3 | 11.5 MB | | 0%
pandas-1.4.3 | 11.5 MB | ###4 | 35%
pandas-1.4.3 | 11.5 MB | ########## | 100%
pandas-1.4.3 | 11.5 MB | ########## | 100%
python-dateutil-2.9. | 218 KB | | 0%
python-dateutil-2.9. | 218 KB | ########## | 100%
python-dateutil-2.9. | 218 KB | ########## | 100%
libgfortran5-13.2.0 | 974 KB | | 0%
libgfortran5-13.2.0 | 974 KB | ########## | 100%
libgfortran5-13.2.0 | 974 KB | ########## | 100%
libgfortran-5.0.0 | 108 KB | | 0%
libgfortran-5.0.0 | 108 KB | ########## | 100%
libgfortran-5.0.0 | 108 KB | ########## | 100%
libblas-3.9.0 | 15 KB | | 0%
libblas-3.9.0 | 15 KB | ########## | 100%
libblas-3.9.0 | 15 KB | ########## | 100%
six-1.16.0 | 14 KB | | 0%
six-1.16.0 | 14 KB | ########## | 100%
Preparing transaction: ...working... done
Verifying transaction: ...working... done
Executing transaction: ...working... done
Collecting package metadata (current_repodata.json): ...working... done
Solving environment: ...working... failed with repodata from current_repodata.json, will retry with next repodata source.
Collecting package metadata (repodata.json): ...working... done
Solving environment: ...working... done
## Package Plan ##
environment location: /Users/biocbuild/bbs-3.19-bioc/meat/basilisk.Rcheck/tests/testthat/install-test-client/locality/1.16.0
added / updated specs:
- python=3.9.12
The following NEW packages will be INSTALLED:
bzip2 conda-forge/osx-arm64::bzip2-1.0.8-h99b78c6_7
ca-certificates conda-forge/osx-arm64::ca-certificates-2024.8.30-hf0a4a13_0
libffi conda-forge/osx-arm64::libffi-3.4.2-h3422bc3_5
libsqlite conda-forge/osx-arm64::libsqlite-3.46.1-hc14010f_0
libzlib conda-forge/osx-arm64::libzlib-1.3.1-h8359307_2
ncurses conda-forge/osx-arm64::ncurses-6.5-h7bae524_1
openssl conda-forge/osx-arm64::openssl-3.3.2-h8359307_0
pip conda-forge/noarch::pip-24.2-pyh8b19718_1
python conda-forge/osx-arm64::python-3.9.12-h14b404e_1_cpython
readline conda-forge/osx-arm64::readline-8.2-h92ec313_1
setuptools conda-forge/noarch::setuptools-75.1.0-pyhd8ed1ab_0
sqlite conda-forge/osx-arm64::sqlite-3.46.1-h3b4c4e4_0
tk conda-forge/osx-arm64::tk-8.6.13-h5083fa2_1
tzdata conda-forge/noarch::tzdata-2024b-hc8b5060_0
wheel conda-forge/noarch::wheel-0.44.0-pyhd8ed1ab_0
xz conda-forge/osx-arm64::xz-5.2.6-h57fd34a_0
Preparing transaction: ...working... done
Verifying transaction: ...working... done
Executing transaction: ...working... done
Collecting package metadata (current_repodata.json): ...working... done
Solving environment: ...working... done
==> WARNING: A newer version of conda exists. <==
current version: 4.12.0
latest version: 24.9.1
Please update conda by running
$ conda update -n base -c defaults conda
# All requested packages already installed.
Collecting package metadata (current_repodata.json): ...working... done
Solving environment: ...working... failed with initial frozen solve. Retrying with flexible solve.
Collecting package metadata (repodata.json): ...working... done
Solving environment: ...working... done
==> WARNING: A newer version of conda exists. <==
current version: 4.12.0
latest version: 24.9.1
Please update conda by running
$ conda update -n base -c defaults conda
## Package Plan ##
environment location: /Users/biocbuild/bbs-3.19-bioc/meat/basilisk.Rcheck/tests/testthat/install-test-client/locality/1.16.0
added / updated specs:
- pandas=1.4.3
- python-dateutil=2.8.2
- python=3.9.12
- pytz=2022.2.1
The following NEW packages will be INSTALLED:
libblas conda-forge/osx-arm64::libblas-3.9.0-24_osxarm64_openblas
libcblas conda-forge/osx-arm64::libcblas-3.9.0-24_osxarm64_openblas
libcxx conda-forge/osx-arm64::libcxx-19.1.2-ha82da77_0
libgfortran conda-forge/osx-arm64::libgfortran-5.0.0-13_2_0_hd922786_3
libgfortran5 conda-forge/osx-arm64::libgfortran5-13.2.0-hf226fd6_3
liblapack conda-forge/osx-arm64::liblapack-3.9.0-24_osxarm64_openblas
libopenblas conda-forge/osx-arm64::libopenblas-0.3.27-openmp_h517c56d_1
llvm-openmp conda-forge/osx-arm64::llvm-openmp-19.1.2-hb52a8e5_0
numpy conda-forge/osx-arm64::numpy-1.26.4-py39h7aa2656_0
pandas conda-forge/osx-arm64::pandas-1.4.3-py39hd2dba81_0
python-dateutil conda-forge/noarch::python-dateutil-2.8.2-pyhd8ed1ab_0
python_abi conda-forge/osx-arm64::python_abi-3.9-5_cp39
pytz conda-forge/noarch::pytz-2022.2.1-pyhd8ed1ab_0
six conda-forge/noarch::six-1.16.0-pyh6c4a22f_0
Preparing transaction: ...working... done
Verifying transaction: ...working... done
Executing transaction: ...working... done
Collecting package metadata (current_repodata.json): ...working... done
Solving environment: ...working... failed with repodata from current_repodata.json, will retry with next repodata source.
Collecting package metadata (repodata.json): ...working... done
Solving environment: ...working... done
## Package Plan ##
environment location: /Users/biocbuild/bbs-3.19-bioc/meat/basilisk.Rcheck/tests/testthat/install-test-client/my_package_A
added / updated specs:
- python=3.9.12
The following NEW packages will be INSTALLED:
bzip2 conda-forge/osx-arm64::bzip2-1.0.8-h99b78c6_7
ca-certificates conda-forge/osx-arm64::ca-certificates-2024.8.30-hf0a4a13_0
libffi conda-forge/osx-arm64::libffi-3.4.2-h3422bc3_5
libsqlite conda-forge/osx-arm64::libsqlite-3.46.1-hc14010f_0
libzlib conda-forge/osx-arm64::libzlib-1.3.1-h8359307_2
ncurses conda-forge/osx-arm64::ncurses-6.5-h7bae524_1
openssl conda-forge/osx-arm64::openssl-3.3.2-h8359307_0
pip conda-forge/noarch::pip-24.2-pyh8b19718_1
python conda-forge/osx-arm64::python-3.9.12-h14b404e_1_cpython
readline conda-forge/osx-arm64::readline-8.2-h92ec313_1
setuptools conda-forge/noarch::setuptools-75.1.0-pyhd8ed1ab_0
sqlite conda-forge/osx-arm64::sqlite-3.46.1-h3b4c4e4_0
tk conda-forge/osx-arm64::tk-8.6.13-h5083fa2_1
tzdata conda-forge/noarch::tzdata-2024b-hc8b5060_0
wheel conda-forge/noarch::wheel-0.44.0-pyhd8ed1ab_0
xz conda-forge/osx-arm64::xz-5.2.6-h57fd34a_0
Preparing transaction: ...working... done
Verifying transaction: ...working... done
Executing transaction: ...working... done
Collecting package metadata (current_repodata.json): ...working... done
Solving environment: ...working... done
==> WARNING: A newer version of conda exists. <==
current version: 4.12.0
latest version: 24.9.1
Please update conda by running
$ conda update -n base -c defaults conda
# All requested packages already installed.
Collecting package metadata (current_repodata.json): ...working... done
Solving environment: ...working... failed with initial frozen solve. Retrying with flexible solve.
Collecting package metadata (repodata.json): ...working... done
Solving environment: ...working... done
==> WARNING: A newer version of conda exists. <==
current version: 4.12.0
latest version: 24.9.1
Please update conda by running
$ conda update -n base -c defaults conda
## Package Plan ##
environment location: /Users/biocbuild/bbs-3.19-bioc/meat/basilisk.Rcheck/tests/testthat/install-test-client/my_package_A
added / updated specs:
- pandas=1.4.3
- python-dateutil=2.8.2
- python=3.9.12
- pytz=2022.2.1
The following NEW packages will be INSTALLED:
libblas conda-forge/osx-arm64::libblas-3.9.0-24_osxarm64_openblas
libcblas conda-forge/osx-arm64::libcblas-3.9.0-24_osxarm64_openblas
libcxx conda-forge/osx-arm64::libcxx-19.1.2-ha82da77_0
libgfortran conda-forge/osx-arm64::libgfortran-5.0.0-13_2_0_hd922786_3
libgfortran5 conda-forge/osx-arm64::libgfortran5-13.2.0-hf226fd6_3
liblapack conda-forge/osx-arm64::liblapack-3.9.0-24_osxarm64_openblas
libopenblas conda-forge/osx-arm64::libopenblas-0.3.27-openmp_h517c56d_1
llvm-openmp conda-forge/osx-arm64::llvm-openmp-19.1.2-hb52a8e5_0
numpy conda-forge/osx-arm64::numpy-1.26.4-py39h7aa2656_0
pandas conda-forge/osx-arm64::pandas-1.4.3-py39hd2dba81_0
python-dateutil conda-forge/noarch::python-dateutil-2.8.2-pyhd8ed1ab_0
python_abi conda-forge/osx-arm64::python_abi-3.9-5_cp39
pytz conda-forge/noarch::pytz-2022.2.1-pyhd8ed1ab_0
six conda-forge/noarch::six-1.16.0-pyh6c4a22f_0
Preparing transaction: ...working... done
Verifying transaction: ...working... done
Executing transaction: ...working... done
Collecting package metadata (current_repodata.json): ...working... done
Solving environment: ...working... failed with repodata from current_repodata.json, will retry with next repodata source.
Collecting package metadata (repodata.json): ...working... done
Solving environment: ...working... done
## Package Plan ##
environment location: /Users/biocbuild/bbs-3.19-bioc/meat/basilisk.Rcheck/tests/testthat/install-test-client/my_package_B
added / updated specs:
- python=3.9.12
The following NEW packages will be INSTALLED:
bzip2 conda-forge/osx-arm64::bzip2-1.0.8-h99b78c6_7
ca-certificates conda-forge/osx-arm64::ca-certificates-2024.8.30-hf0a4a13_0
libffi conda-forge/osx-arm64::libffi-3.4.2-h3422bc3_5
libsqlite conda-forge/osx-arm64::libsqlite-3.46.1-hc14010f_0
libzlib conda-forge/osx-arm64::libzlib-1.3.1-h8359307_2
ncurses conda-forge/osx-arm64::ncurses-6.5-h7bae524_1
openssl conda-forge/osx-arm64::openssl-3.3.2-h8359307_0
pip conda-forge/noarch::pip-24.2-pyh8b19718_1
python conda-forge/osx-arm64::python-3.9.12-h14b404e_1_cpython
readline conda-forge/osx-arm64::readline-8.2-h92ec313_1
setuptools conda-forge/noarch::setuptools-75.1.0-pyhd8ed1ab_0
sqlite conda-forge/osx-arm64::sqlite-3.46.1-h3b4c4e4_0
tk conda-forge/osx-arm64::tk-8.6.13-h5083fa2_1
tzdata conda-forge/noarch::tzdata-2024b-hc8b5060_0
wheel conda-forge/noarch::wheel-0.44.0-pyhd8ed1ab_0
xz conda-forge/osx-arm64::xz-5.2.6-h57fd34a_0
Preparing transaction: ...working... done
Verifying transaction: ...working... done
Executing transaction: ...working... done
Collecting package metadata (current_repodata.json): ...working... done
Solving environment: ...working... done
==> WARNING: A newer version of conda exists. <==
current version: 4.12.0
latest version: 24.9.1
Please update conda by running
$ conda update -n base -c defaults conda
# All requested packages already installed.
Collecting package metadata (current_repodata.json): ...working... done
Solving environment: ...working... failed with initial frozen solve. Retrying with flexible solve.
Collecting package metadata (repodata.json): ...working... done
Solving environment: ...working... done
==> WARNING: A newer version of conda exists. <==
current version: 4.12.0
latest version: 24.9.1
Please update conda by running
$ conda update -n base -c defaults conda
## Package Plan ##
environment location: /Users/biocbuild/bbs-3.19-bioc/meat/basilisk.Rcheck/tests/testthat/install-test-client/my_package_B
added / updated specs:
- pandas=1.4.2
- python-dateutil=2.8.1
- python=3.9.12
- pytz=2022.1
The following NEW packages will be INSTALLED:
libblas conda-forge/osx-arm64::libblas-3.9.0-24_osxarm64_openblas
libcblas conda-forge/osx-arm64::libcblas-3.9.0-24_osxarm64_openblas
libcxx conda-forge/osx-arm64::libcxx-19.1.2-ha82da77_0
libgfortran conda-forge/osx-arm64::libgfortran-5.0.0-13_2_0_hd922786_3
libgfortran5 conda-forge/osx-arm64::libgfortran5-13.2.0-hf226fd6_3
liblapack conda-forge/osx-arm64::liblapack-3.9.0-24_osxarm64_openblas
libopenblas conda-forge/osx-arm64::libopenblas-0.3.27-openmp_h517c56d_1
llvm-openmp conda-forge/osx-arm64::llvm-openmp-19.1.2-hb52a8e5_0
numpy conda-forge/osx-arm64::numpy-1.26.4-py39h7aa2656_0
pandas conda-forge/osx-arm64::pandas-1.4.2-py39hd2dba81_2
python-dateutil conda-forge/noarch::python-dateutil-2.8.1-py_0
python_abi conda-forge/osx-arm64::python_abi-3.9-5_cp39
pytz conda-forge/noarch::pytz-2022.1-pyhd8ed1ab_0
six conda-forge/noarch::six-1.16.0-pyh6c4a22f_0
Preparing transaction: ...working... done
Verifying transaction: ...working... done
Executing transaction: ...working... done
[ FAIL 0 | WARN 0 | SKIP 1 | PASS 61 ]
══ Skipped tests (1) ═══════════════════════════════════════════════════════════
• On Mac aarch64 (1): 'test-install.R:35:5'
[ FAIL 0 | WARN 0 | SKIP 1 | PASS 61 ]
>
> proc.time()
user system elapsed
931.339 291.936 1551.093
basilisk.Rcheck/basilisk-Ex.timings
| name | user | system | elapsed | |
| BasiliskEnvironment-class | 0.003 | 0.000 | 0.004 | |
| PyPiLink | 0.000 | 0.000 | 0.001 | |
| basiliskOptions | 0.000 | 0.001 | 0.000 | |
| basiliskStart | 247.269 | 56.636 | 353.364 | |
| configureBasiliskEnv | 0 | 0 | 0 | |
| createLocalBasiliskEnv | 84.444 | 25.071 | 127.701 | |
| listPackages | 0.763 | 0.275 | 1.474 | |
| obtainEnvironmentPath | 0.004 | 0.002 | 0.005 | |
| setupBasiliskEnv | 0.002 | 0.001 | 0.003 | |
| useBasiliskEnv | 0.970 | 0.438 | 1.493 | |