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This page was generated on 2024-10-18 20:40 -0400 (Fri, 18 Oct 2024).

HostnameOSArch (*)R versionInstalled pkgs
nebbiolo1Linux (Ubuntu 22.04.3 LTS)x86_644.4.1 (2024-06-14) -- "Race for Your Life" 4763
palomino7Windows Server 2022 Datacenterx644.4.1 (2024-06-14 ucrt) -- "Race for Your Life" 4500
merida1macOS 12.7.5 Montereyx86_644.4.1 (2024-06-14) -- "Race for Your Life" 4530
kjohnson1macOS 13.6.6 Venturaarm644.4.1 (2024-06-14) -- "Race for Your Life" 4480
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

Package 2094/2300HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
Structstrings 1.20.0  (landing page)
Felix G.M. Ernst
Snapshot Date: 2024-10-16 14:00 -0400 (Wed, 16 Oct 2024)
git_url: https://git.bioconductor.org/packages/Structstrings
git_branch: RELEASE_3_19
git_last_commit: 18cf3f2
git_last_commit_date: 2024-04-30 11:13:11 -0400 (Tue, 30 Apr 2024)
nebbiolo1Linux (Ubuntu 22.04.3 LTS) / x86_64  OK    OK    WARNINGS  UNNEEDED, same version is already published
palomino7Windows Server 2022 Datacenter / x64  OK    OK    WARNINGS    OK  UNNEEDED, same version is already published
merida1macOS 12.7.5 Monterey / x86_64  OK    OK    WARNINGS    OK  UNNEEDED, same version is already published
kjohnson1macOS 13.6.6 Ventura / arm64  OK    OK    WARNINGS    NA  


BUILD BIN results for Structstrings on palomino7

To the developers/maintainers of the Structstrings package:
- Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/Structstrings.git to reflect on this report. See Troubleshooting Build Report for more information.
- Use the following Renviron settings to reproduce errors and warnings.
- If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information.

raw results


Summary

Package: Structstrings
Version: 1.20.0
Command: rm -rf Structstrings.buildbin-libdir && mkdir Structstrings.buildbin-libdir && E:\biocbuild\bbs-3.19-bioc\R\bin\R.exe CMD INSTALL --build --library=Structstrings.buildbin-libdir Structstrings_1.20.0.tar.gz
StartedAt: 2024-10-17 08:44:30 -0400 (Thu, 17 Oct 2024)
EndedAt: 2024-10-17 08:45:41 -0400 (Thu, 17 Oct 2024)
EllapsedTime: 70.8 seconds
RetCode: 0
Status:   OK  
PackageFile: Structstrings_1.20.0.zip
PackageFileSize: 805.2 KiB

Command output

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###
### Running command:
###
###   rm -rf Structstrings.buildbin-libdir && mkdir Structstrings.buildbin-libdir && E:\biocbuild\bbs-3.19-bioc\R\bin\R.exe CMD INSTALL --build --library=Structstrings.buildbin-libdir Structstrings_1.20.0.tar.gz
###
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* installing *source* package 'Structstrings' ...
** using staged installation
** libs
using C compiler: 'gcc.exe (GCC) 13.2.0'
gcc  -I"E:/biocbuild/bbs-3.19-bioc/R/include" -DNDEBUG  -I'E:/biocbuild/bbs-3.19-bioc/R/library/IRanges/include' -I'E:/biocbuild/bbs-3.19-bioc/R/library/S4Vectors/include'   -I"C:/rtools44/x86_64-w64-mingw32.static.posix/include"     -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -c DotBracketDataFrame_class.c -o DotBracketDataFrame_class.o
DotBracketDataFrame_class.c: In function 'get_base_pairing_per_char_pair':
DotBracketDataFrame_class.c:40:29: warning: format '%s' expects argument of type 'char *', but argument 2 has type 'int' [-Wformat=]
   40 |         error("unbalanced '%s%s' brackets in dot bracket structure", bracket_open, bracket_close);
      |                            ~^                                        ~~~~~~~~~~~~
      |                             |                                        |
      |                             char *                                   int
      |                            %d
DotBracketDataFrame_class.c:40:31: warning: format '%s' expects argument of type 'char *', but argument 3 has type 'int' [-Wformat=]
   40 |         error("unbalanced '%s%s' brackets in dot bracket structure", bracket_open, bracket_close);
      |                              ~^                                                    ~~~~~~~~~~~~~
      |                               |                                                    |
      |                               char *                                               int
      |                              %d
DotBracketDataFrame_class.c:52:25: warning: format '%s' expects argument of type 'char *', but argument 2 has type 'int' [-Wformat=]
   52 |     error("unbalanced '%s%s' brackets in dot bracket structure", bracket_open,  bracket_close);
      |                        ~^                                        ~~~~~~~~~~~~
      |                         |                                        |
      |                         char *                                   int
      |                        %d
DotBracketDataFrame_class.c:52:27: warning: format '%s' expects argument of type 'char *', but argument 3 has type 'int' [-Wformat=]
   52 |     error("unbalanced '%s%s' brackets in dot bracket structure", bracket_open,  bracket_close);
      |                          ~^                                                     ~~~~~~~~~~~~~
      |                           |                                                     |
      |                           char *                                                int
      |                          %d
gcc  -I"E:/biocbuild/bbs-3.19-bioc/R/include" -DNDEBUG  -I'E:/biocbuild/bbs-3.19-bioc/R/library/IRanges/include' -I'E:/biocbuild/bbs-3.19-bioc/R/library/S4Vectors/include'   -I"C:/rtools44/x86_64-w64-mingw32.static.posix/include"     -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -c IRanges_stubs.c -o IRanges_stubs.o
gcc  -I"E:/biocbuild/bbs-3.19-bioc/R/include" -DNDEBUG  -I'E:/biocbuild/bbs-3.19-bioc/R/library/IRanges/include' -I'E:/biocbuild/bbs-3.19-bioc/R/library/S4Vectors/include'   -I"C:/rtools44/x86_64-w64-mingw32.static.posix/include"     -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -c R_init_Structstrings.c -o R_init_Structstrings.o
gcc  -I"E:/biocbuild/bbs-3.19-bioc/R/include" -DNDEBUG  -I'E:/biocbuild/bbs-3.19-bioc/R/library/IRanges/include' -I'E:/biocbuild/bbs-3.19-bioc/R/library/S4Vectors/include'   -I"C:/rtools44/x86_64-w64-mingw32.static.posix/include"     -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -c S4Vectors_stubs.c -o S4Vectors_stubs.o
gcc  -I"E:/biocbuild/bbs-3.19-bioc/R/include" -DNDEBUG  -I'E:/biocbuild/bbs-3.19-bioc/R/library/IRanges/include' -I'E:/biocbuild/bbs-3.19-bioc/R/library/S4Vectors/include'   -I"C:/rtools44/x86_64-w64-mingw32.static.posix/include"     -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -c utils.c -o utils.o
gcc -shared -s -static-libgcc -o Structstrings.dll tmp.def DotBracketDataFrame_class.o IRanges_stubs.o R_init_Structstrings.o S4Vectors_stubs.o utils.o -LC:/rtools44/x86_64-w64-mingw32.static.posix/lib/x64 -LC:/rtools44/x86_64-w64-mingw32.static.posix/lib -LE:/biocbuild/bbs-3.19-bioc/R/bin/x64 -lR
installing to E:/biocbuild/bbs-3.19-bioc/meat/Structstrings.buildbin-libdir/00LOCK-Structstrings/00new/Structstrings/libs/x64
** R
** data
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* MD5 sums
packaged installation of 'Structstrings' as Structstrings_1.20.0.zip
* DONE (Structstrings)