Back to Multiple platform build/check report for BioC 3.19: simplified long |
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This page was generated on 2024-09-27 20:39 -0400 (Fri, 27 Sep 2024).
Hostname | OS | Arch (*) | R version | Installed pkgs |
---|---|---|---|---|
nebbiolo1 | Linux (Ubuntu 22.04.3 LTS) | x86_64 | 4.4.1 (2024-06-14) -- "Race for Your Life" | 4759 |
palomino7 | Windows Server 2022 Datacenter | x64 | 4.4.1 (2024-06-14 ucrt) -- "Race for Your Life" | 4497 |
merida1 | macOS 12.7.5 Monterey | x86_64 | 4.4.1 (2024-06-14) -- "Race for Your Life" | 4526 |
kjohnson1 | macOS 13.6.6 Ventura | arm64 | 4.4.1 (2024-06-14) -- "Race for Your Life" | 4475 |
Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X |
Package 1698/2300 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
RcisTarget 1.24.0 (landing page) Gert Hulselmans
| nebbiolo1 | Linux (Ubuntu 22.04.3 LTS) / x86_64 | OK | OK | OK | |||||||||
palomino7 | Windows Server 2022 Datacenter / x64 | OK | OK | OK | OK | |||||||||
merida1 | macOS 12.7.5 Monterey / x86_64 | ERROR | ERROR | skipped | skipped | |||||||||
kjohnson1 | macOS 13.6.6 Ventura / arm64 | OK | OK | OK | OK | |||||||||
To the developers/maintainers of the RcisTarget package: - Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/RcisTarget.git to reflect on this report. See Troubleshooting Build Report for more information. - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information. |
Package: RcisTarget |
Version: 1.24.0 |
Command: /home/biocbuild/bbs-3.19-bioc/R/bin/R CMD check --install=check:RcisTarget.install-out.txt --library=/home/biocbuild/bbs-3.19-bioc/R/site-library --timings RcisTarget_1.24.0.tar.gz |
StartedAt: 2024-09-26 03:26:23 -0400 (Thu, 26 Sep 2024) |
EndedAt: 2024-09-26 03:33:16 -0400 (Thu, 26 Sep 2024) |
EllapsedTime: 413.1 seconds |
RetCode: 0 |
Status: OK |
CheckDir: RcisTarget.Rcheck |
Warnings: 0 |
############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/bbs-3.19-bioc/R/bin/R CMD check --install=check:RcisTarget.install-out.txt --library=/home/biocbuild/bbs-3.19-bioc/R/site-library --timings RcisTarget_1.24.0.tar.gz ### ############################################################################## ############################################################################## * using log directory ‘/home/biocbuild/bbs-3.19-bioc/meat/RcisTarget.Rcheck’ * using R version 4.4.1 (2024-06-14) * using platform: x86_64-pc-linux-gnu * R was compiled by gcc (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0 GNU Fortran (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0 * running under: Ubuntu 22.04.4 LTS * using session charset: UTF-8 * checking for file ‘RcisTarget/DESCRIPTION’ ... OK * checking extension type ... Package * this is package ‘RcisTarget’ version ‘1.24.0’ * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking for sufficient/correct file permissions ... OK * checking whether package ‘RcisTarget’ can be installed ... OK * checking installed package size ... NOTE installed size is 12.1Mb sub-directories of 1Mb or more: data 11.5Mb * checking package directory ... OK * checking ‘build’ directory ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking code files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... OK * checking whether the package can be loaded with stated dependencies ... OK * checking whether the package can be unloaded cleanly ... OK * checking whether the namespace can be loaded with stated dependencies ... OK * checking whether the namespace can be unloaded cleanly ... OK * checking loading without being on the library search path ... OK * checking dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... OK * checking Rd files ... NOTE checkRd: (-1) dbRegionsLoc.Rd:11-14: Lost braces in \itemize; meant \describe ? checkRd: (-1) dbRegionsLoc.Rd:16-19: Lost braces in \itemize; meant \describe ? checkRd: (-1) importAnnotations.Rd:44: Lost braces in \itemize; meant \describe ? checkRd: (-1) importAnnotations.Rd:45: Lost braces in \itemize; meant \describe ? checkRd: (-1) importAnnotations.Rd:46: Lost braces in \itemize; meant \describe ? checkRd: (-1) importAnnotations.Rd:48-51: Lost braces in \itemize; meant \describe ? checkRd: (-1) importAnnotations.Rd:24: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) importAnnotations.Rd:25: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) importAnnotations.Rd:27-31: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) importAnnotations.Rd:32: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) importAnnotations.Rd:33-36: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) motifAnnotations.Rd:18-20: Lost braces in \itemize; meant \describe ? checkRd: (-1) motifAnnotations.Rd:22-24: Lost braces in \itemize; meant \describe ? checkRd: (-1) motifAnnotations.Rd:26-28: Lost braces in \itemize; meant \describe ? checkRd: (-1) motifAnnotations.Rd:54: Lost braces in \itemize; meant \describe ? checkRd: (-1) motifAnnotations.Rd:55: Lost braces in \itemize; meant \describe ? checkRd: (-1) motifAnnotations.Rd:58-61: Lost braces in \itemize; meant \describe ? checkRd: (-1) motifAnnotations.Rd:62: Lost braces in \itemize; meant \describe ? checkRd: (-1) motifAnnotations.Rd:63-66: Lost braces in \itemize; meant \describe ? * checking Rd metadata ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking contents of ‘data’ directory ... OK * checking data for non-ASCII characters ... OK * checking data for ASCII and uncompressed saves ... OK * checking files in ‘vignettes’ ... OK * checking examples ... OK Examples with CPU (user + system) or elapsed time > 5s user system elapsed addMotifAnnotation 17.699 0.885 18.543 addSignificantGenes 15.752 1.212 16.953 aucScores-class 8.756 0.336 9.093 getMotifAnnotation 8.845 0.246 9.022 reRank 7.457 0.100 7.557 rankingRcisTarget-class 6.919 0.148 7.066 * checking for unstated dependencies in ‘tests’ ... OK * checking tests ... Running ‘testthat.R’ OK * checking for unstated dependencies in vignettes ... OK * checking package vignettes ... OK * checking re-building of vignette outputs ... OK * checking PDF version of manual ... OK * DONE Status: 2 NOTEs See ‘/home/biocbuild/bbs-3.19-bioc/meat/RcisTarget.Rcheck/00check.log’ for details.
RcisTarget.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/bbs-3.19-bioc/R/bin/R CMD INSTALL RcisTarget ### ############################################################################## ############################################################################## * installing to library ‘/home/biocbuild/bbs-3.19-bioc/R/site-library’ * installing *source* package ‘RcisTarget’ ... ** using staged installation ** R ** data ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (RcisTarget)
RcisTarget.Rcheck/tests/testthat.Rout
R version 4.4.1 (2024-06-14) -- "Race for Your Life" Copyright (C) 2024 The R Foundation for Statistical Computing Platform: x86_64-pc-linux-gnu R is free software and comes with ABSOLUTELY NO WARRANTY. You are welcome to redistribute it under certain conditions. Type 'license()' or 'licence()' for distribution details. R is a collaborative project with many contributors. Type 'contributors()' for more information and 'citation()' on how to cite R or R packages in publications. Type 'demo()' for some demos, 'help()' for on-line help, or 'help.start()' for an HTML browser interface to help. Type 'q()' to quit R. > library(testthat) > library(RcisTarget) > > test_check("RcisTarget") [ FAIL 0 | WARN 0 | SKIP 0 | PASS 58 ] > > proc.time() user system elapsed 39.036 5.637 44.078
RcisTarget.Rcheck/RcisTarget-Ex.timings
name | user | system | elapsed | |
RcisTarget | 0.867 | 0.012 | 0.881 | |
addLogo | 0.100 | 0.016 | 0.115 | |
addMotifAnnotation | 17.699 | 0.885 | 18.543 | |
addSignificantGenes | 15.752 | 1.212 | 16.953 | |
aucScores-class | 8.756 | 0.336 | 9.093 | |
calcAUC | 0 | 0 | 0 | |
convertToTargetRegions | 0 | 0 | 0 | |
getDbRegionsLoc | 0 | 0 | 0 | |
getMotifAnnotation | 8.845 | 0.246 | 9.022 | |
importAnnotations | 0.776 | 0.020 | 0.796 | |
importRankings | 0.654 | 0.000 | 0.653 | |
rankingRcisTarget-class | 6.919 | 0.148 | 7.066 | |
reRank | 7.457 | 0.100 | 7.557 | |
showLogo | 0.067 | 0.008 | 0.075 | |