Multiple platform build/check report for BioC 3.19 - BUILD results for DeepPINCS on palomino7

Hostname	OS	Arch (*)	R version	Installed pkgs
nebbiolo1	Linux (Ubuntu 22.04.3 LTS)	x86_64	4.4.1 (2024-06-14) -- "Race for Your Life"	4763
palomino7	Windows Server 2022 Datacenter	x64	4.4.1 (2024-06-14 ucrt) -- "Race for Your Life"	4500
merida1	macOS 12.7.5 Monterey	x86_64	4.4.1 (2024-06-14) -- "Race for Your Life"	4530
kjohnson1	macOS 13.6.6 Ventura	arm64	4.4.1 (2024-06-14) -- "Race for Your Life"	4480
Click on any hostname to see more info about the system (e.g. compilers) () as reported by 'uname -p', except on Windows and Mac OS X*

BUILD results for DeepPINCS on palomino7

To the developers/maintainers of the DeepPINCS package:
- Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/DeepPINCS.git to reflect on this report. See Troubleshooting Build Report for more information.
- Use the following Renviron settings to reproduce errors and warnings.
- If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information.

raw results

Summary

Package: DeepPINCS

Version: 1.12.0

Command: chmod a+r DeepPINCS -R && E:\biocbuild\bbs-3.19-bioc\R\bin\R.exe CMD build --keep-empty-dirs --no-resave-data DeepPINCS

StartedAt: 2024-10-16 18:34:46 -0400 (Wed, 16 Oct 2024)

EndedAt: 2024-10-16 18:36:34 -0400 (Wed, 16 Oct 2024)

EllapsedTime: 107.3 seconds

RetCode: 1

Status: ERROR

PackageFile: None

PackageFileSize: NA

Command output

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### Running command:
###
###   chmod a+r DeepPINCS -R && E:\biocbuild\bbs-3.19-bioc\R\bin\R.exe CMD build --keep-empty-dirs --no-resave-data DeepPINCS
###
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* checking for file 'DeepPINCS/DESCRIPTION' ... OK
* preparing 'DeepPINCS':
* checking DESCRIPTION meta-information ... OK
* installing the package to build vignettes
* creating vignettes ... ERROR
--- re-building 'DeepPINCS.Rmd' using rmarkdown
2024-10-16 18:35:19.151598: I tensorflow/core/util/port.cc:113] oneDNN custom operations are on. You may see slightly different numerical results due to floating-point round-off errors from different computation orders. To turn them off, set the environment variable `TF_ENABLE_ONEDNN_OPTS=0`.
2024-10-16 18:35:28.666674: I tensorflow/core/util/port.cc:113] oneDNN custom operations are on. You may see slightly different numerical results due to floating-point round-off errors from different computation orders. To turn them off, set the environment variable `TF_ENABLE_ONEDNN_OPTS=0`.
2024-10-16 18:36:02.150740: I tensorflow/core/platform/cpu_feature_guard.cc:210] This TensorFlow binary is optimized to use available CPU instructions in performance-critical operations.
To enable the following instructions: AVX2 AVX512F AVX512_VNNI FMA, in other operations, rebuild TensorFlow with the appropriate compiler flags.

Quitting from lines 82-108 [unnamed-chunk-3] (DeepPINCS.Rmd)
Error: processing vignette 'DeepPINCS.Rmd' failed with diagnostics:
ValueError: For a `build()` method with more than one argument, all arguments should have a `_shape` suffix and match an argument from `call()`. E.g. `build(self, foo_shape, bar_shape)`  For layer 'MultiLinear', Received `build()` argument `self`, which does not end in `_shape`.
Run `reticulate::py_last_error()` for details.
--- failed re-building 'DeepPINCS.Rmd'

SUMMARY: processing the following file failed:
  'DeepPINCS.Rmd'

Error: Vignette re-building failed.
Execution halted