Back to Multiple platform build/check report for BioC 3.19:   simplified   long
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This page was generated on 2024-10-18 20:39 -0400 (Fri, 18 Oct 2024).

HostnameOSArch (*)R versionInstalled pkgs
nebbiolo1Linux (Ubuntu 22.04.3 LTS)x86_644.4.1 (2024-06-14) -- "Race for Your Life" 4763
palomino7Windows Server 2022 Datacenterx644.4.1 (2024-06-14 ucrt) -- "Race for Your Life" 4500
merida1macOS 12.7.5 Montereyx86_644.4.1 (2024-06-14) -- "Race for Your Life" 4530
kjohnson1macOS 13.6.6 Venturaarm644.4.1 (2024-06-14) -- "Race for Your Life" 4480
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

Package 63/2300HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
ANCOMBC 2.6.0  (landing page)
Huang Lin
Snapshot Date: 2024-10-16 14:00 -0400 (Wed, 16 Oct 2024)
git_url: https://git.bioconductor.org/packages/ANCOMBC
git_branch: RELEASE_3_19
git_last_commit: 8fcfec8
git_last_commit_date: 2024-04-30 11:26:51 -0400 (Tue, 30 Apr 2024)
nebbiolo1Linux (Ubuntu 22.04.3 LTS) / x86_64  OK    ERROR  skipped
palomino7Windows Server 2022 Datacenter / x64  OK    ERROR  skippedskipped
merida1macOS 12.7.5 Monterey / x86_64  OK    ERROR  skippedskipped
kjohnson1macOS 13.6.6 Ventura / arm64  OK    ERROR  skippedskipped

BUILD results for ANCOMBC on palomino7

To the developers/maintainers of the ANCOMBC package:
- Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/ANCOMBC.git to reflect on this report. See Troubleshooting Build Report for more information.
- Use the following Renviron settings to reproduce errors and warnings.
- If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information.

raw results


Summary

Package: ANCOMBC
Version: 2.6.0
Command: chmod a+r ANCOMBC -R && E:\biocbuild\bbs-3.19-bioc\R\bin\R.exe CMD build --keep-empty-dirs --no-resave-data ANCOMBC
StartedAt: 2024-10-16 17:32:26 -0400 (Wed, 16 Oct 2024)
EndedAt: 2024-10-16 17:44:46 -0400 (Wed, 16 Oct 2024)
EllapsedTime: 739.8 seconds
RetCode: 1
Status:   ERROR  
PackageFile: None
PackageFileSize: NA

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   chmod a+r ANCOMBC -R && E:\biocbuild\bbs-3.19-bioc\R\bin\R.exe CMD build --keep-empty-dirs --no-resave-data ANCOMBC
###
##############################################################################
##############################################################################


* checking for file 'ANCOMBC/DESCRIPTION' ... OK
* preparing 'ANCOMBC':
* checking DESCRIPTION meta-information ... OK
* installing the package to process help pages
Loading required namespace: ANCOMBC
* saving partial Rd database
* creating vignettes ... ERROR
--- re-building 'ANCOM.Rmd' using rmarkdown
--- finished re-building 'ANCOM.Rmd'

--- re-building 'ANCOMBC.Rmd' using rmarkdown
--- finished re-building 'ANCOMBC.Rmd'

--- re-building 'ANCOMBC2.Rmd' using rmarkdown
--- finished re-building 'ANCOMBC2.Rmd'

--- re-building 'SECOM.Rmd' using rmarkdown

Quitting from lines 98-113 [unnamed-chunk-2] (SECOM.Rmd)
Error: processing vignette 'SECOM.Rmd' failed with diagnostics:
unused arguments (probs = wins_quant, na.rm = TRUE)
--- failed re-building 'SECOM.Rmd'

SUMMARY: processing the following file failed:
  'SECOM.Rmd'

Error: Vignette re-building failed.
Execution halted