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This page was generated on 2024-03-08 16:41:48 -0500 (Fri, 08 Mar 2024).

HostnameOSArch (*)R versionInstalled pkgs
nebbiolo2Linux (Ubuntu 22.04.3 LTS)x86_644.1.3 (2022-03-10) -- "One Push-Up" 655
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Package 107/118HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
sparseMatrixStats 1.14.0  (landing page)
Constantin Ahlmann-Eltze
Snapshot Date: 2024-03-08 15:25:35 -0500 (Fri, 08 Mar 2024)
git_url: https://git.bioconductor.org/packages/sparseMatrixStats
git_branch: RELEASE_3_18
git_last_commit: 2923a3b
git_last_commit_date: 2023-10-24 11:20:53 -0500 (Tue, 24 Oct 2023)
nebbiolo2Linux (Ubuntu 22.04.3 LTS) / x86_64  OK    OK    OK  

INSTALL results for sparseMatrixStats on nebbiolo2


To the developers/maintainers of the sparseMatrixStats package:
- Use the following Renviron settings to reproduce errors and warnings.
- If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information.

raw results


Summary

Package: sparseMatrixStats
Version: 1.14.0
Command: /home/hpages/bbs-3.18-bioc-R41/R/bin/R CMD INSTALL sparseMatrixStats
StartedAt: 2024-03-08 15:28:27 -0500 (Fri, 08 Mar 2024)
EndedAt: 2024-03-08 15:29:02 -0500 (Fri, 08 Mar 2024)
EllapsedTime: 34.7 seconds
RetCode: 0
Status:   OK  

Command output

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### Running command:
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###   /home/hpages/bbs-3.18-bioc-R41/R/bin/R CMD INSTALL sparseMatrixStats
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* installing to library ‘/home/hpages/bbs-3.18-bioc-R41/R/site-library’
* installing *source* package ‘sparseMatrixStats’ ...
** using staged installation
** libs
g++ -std=gnu++11 -I"/home/hpages/bbs-3.18-bioc-R41/R/include" -DNDEBUG  -I'/home/hpages/bbs-3.18-bioc-R41/R/site-library/Rcpp/include' -I/usr/local/include   -fpic  -g -O2  -Wall -c RcppExports.cpp -o RcppExports.o
g++ -std=gnu++11 -I"/home/hpages/bbs-3.18-bioc-R41/R/include" -DNDEBUG  -I'/home/hpages/bbs-3.18-bioc-R41/R/site-library/Rcpp/include' -I/usr/local/include   -fpic  -g -O2  -Wall -c SparseMatrixView.cpp -o SparseMatrixView.o
g++ -std=gnu++11 -I"/home/hpages/bbs-3.18-bioc-R41/R/include" -DNDEBUG  -I'/home/hpages/bbs-3.18-bioc-R41/R/site-library/Rcpp/include' -I/usr/local/include   -fpic  -g -O2  -Wall -c methods.cpp -o methods.o
In file included from methods.cpp:6:
quantile.h: In instantiation of ‘double quantile_sparse_impl(T, int, double) [with T = VectorSubsetView<14>]’:
quantile.h:85:58:   required from here
quantile.h:35:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<double>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
   35 |   for(int i = 0; i < sorted_values.size() + number_of_zeros; i++){
      |                  ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
methods.cpp: In instantiation of ‘double colOrderStats::operator()(V&, R&, int) const [with V = SkipNAVectorSubsetView<14>; R = SkipNAVectorSubsetView<13>]’:
methods.cpp:25:18:   required from ‘Rcpp::NumericVector reduce_matrix_double(Rcpp::S4, bool, Functor) [with Functor = colOrderStats; Rcpp::NumericVector = Rcpp::Vector<14, Rcpp::PreserveStorage>; Rcpp::S4 = Rcpp::S4_Impl<Rcpp::PreserveStorage>]’
methods.cpp:510:30:   required from here
methods.cpp:475:22: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<double>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  475 |     for(int i = 0; i < sorted_values.size() + number_of_zeros; i++){
      |                    ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
methods.cpp: In instantiation of ‘double colOrderStats::operator()(V&, R&, int) const [with V = VectorSubsetView<14>; R = VectorSubsetView<13>]’:
methods.cpp:30:18:   required from ‘Rcpp::NumericVector reduce_matrix_double(Rcpp::S4, bool, Functor) [with Functor = colOrderStats; Rcpp::NumericVector = Rcpp::Vector<14, Rcpp::PreserveStorage>; Rcpp::S4 = Rcpp::S4_Impl<Rcpp::PreserveStorage>]’
methods.cpp:510:30:   required from here
methods.cpp:475:22: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<double>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
In file included from methods.cpp:6:
quantile.h: In instantiation of ‘double quantile_sparse_impl(T, int, double) [with T = SkipNAVectorSubsetView<14>]’:
methods.cpp:269:32:   required from ‘double colMedians::operator()(V&, R&, int) const [with V = SkipNAVectorSubsetView<14>; R = SkipNAVectorSubsetView<13>]’
methods.cpp:25:18:   required from ‘Rcpp::NumericVector reduce_matrix_double(Rcpp::S4, bool, Functor) [with Functor = colMedians; Rcpp::NumericVector = Rcpp::Vector<14, Rcpp::PreserveStorage>; Rcpp::S4 = Rcpp::S4_Impl<Rcpp::PreserveStorage>]’
methods.cpp:277:30:   required from here
quantile.h:35:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<double>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
   35 |   for(int i = 0; i < sorted_values.size() + number_of_zeros; i++){
      |                  ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
g++ -std=gnu++11 -I"/home/hpages/bbs-3.18-bioc-R41/R/include" -DNDEBUG  -I'/home/hpages/bbs-3.18-bioc-R41/R/site-library/Rcpp/include' -I/usr/local/include   -fpic  -g -O2  -Wall -c row_methods.cpp -o row_methods.o
g++ -std=gnu++11 -shared -L/home/hpages/bbs-3.18-bioc-R41/R/lib -L/usr/local/lib -o sparseMatrixStats.so RcppExports.o SparseMatrixView.o methods.o row_methods.o -L/home/hpages/bbs-3.18-bioc-R41/R/lib -lR
installing to /home/hpages/bbs-3.18-bioc-R41/R/site-library/00LOCK-sparseMatrixStats/00new/sparseMatrixStats/libs
** R
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
*** copying figures
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (sparseMatrixStats)