Back to Using R 4.1.3 to BUILD/CHECK a small subset of 3.18 packages

This page was generated on 2024-03-08 16:41:48 -0500 (Fri, 08 Mar 2024).

HostnameOSArch (*)R versionInstalled pkgs
nebbiolo2Linux (Ubuntu 22.04.3 LTS)x86_644.1.3 (2022-03-10) -- "One Push-Up" 655
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

Package 99/118HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
S4Arrays 1.2.1  (landing page)
Hervé Pagès
Snapshot Date: 2024-03-08 15:25:35 -0500 (Fri, 08 Mar 2024)
git_url: https://git.bioconductor.org/packages/S4Arrays
git_branch: RELEASE_3_18
git_last_commit: 59b8f4e
git_last_commit_date: 2024-03-03 17:58:57 -0500 (Sun, 03 Mar 2024)
nebbiolo2Linux (Ubuntu 22.04.3 LTS) / x86_64  OK    OK    OK  

INSTALL results for S4Arrays on nebbiolo2


To the developers/maintainers of the S4Arrays package:
- Use the following Renviron settings to reproduce errors and warnings.
- If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information.

raw results


Summary

Package: S4Arrays
Version: 1.2.1
Command: /home/hpages/bbs-3.18-bioc-R41/R/bin/R CMD INSTALL S4Arrays
StartedAt: 2024-03-08 15:30:08 -0500 (Fri, 08 Mar 2024)
EndedAt: 2024-03-08 15:30:23 -0500 (Fri, 08 Mar 2024)
EllapsedTime: 14.6 seconds
RetCode: 0
Status:   OK  

Command output

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### Running command:
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###   /home/hpages/bbs-3.18-bioc-R41/R/bin/R CMD INSTALL S4Arrays
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* installing to library ‘/home/hpages/bbs-3.18-bioc-R41/R/site-library’
* installing *source* package ‘S4Arrays’ ...
** using staged installation
** libs
gcc -I"/home/hpages/bbs-3.18-bioc-R41/R/include" -DNDEBUG  -I'/home/hpages/bbs-3.18-bioc-R41/R/site-library/S4Vectors/include' -I/usr/local/include   -fpic  -g -O2  -Wall -c R_init_S4Arrays.c -o R_init_S4Arrays.o
gcc -I"/home/hpages/bbs-3.18-bioc-R41/R/include" -DNDEBUG  -I'/home/hpages/bbs-3.18-bioc-R41/R/site-library/S4Vectors/include' -I/usr/local/include   -fpic  -g -O2  -Wall -c S4Vectors_stubs.c -o S4Vectors_stubs.o
gcc -I"/home/hpages/bbs-3.18-bioc-R41/R/include" -DNDEBUG  -I'/home/hpages/bbs-3.18-bioc-R41/R/site-library/S4Vectors/include' -I/usr/local/include   -fpic  -g -O2  -Wall -c abind.c -o abind.o
gcc -I"/home/hpages/bbs-3.18-bioc-R41/R/include" -DNDEBUG  -I'/home/hpages/bbs-3.18-bioc-R41/R/site-library/S4Vectors/include' -I/usr/local/include   -fpic  -g -O2  -Wall -c array_selection.c -o array_selection.o
gcc -I"/home/hpages/bbs-3.18-bioc-R41/R/include" -DNDEBUG  -I'/home/hpages/bbs-3.18-bioc-R41/R/site-library/S4Vectors/include' -I/usr/local/include   -fpic  -g -O2  -Wall -c dim_tuning_utils.c -o dim_tuning_utils.o
gcc -shared -L/home/hpages/bbs-3.18-bioc-R41/R/lib -L/usr/local/lib -o S4Arrays.so R_init_S4Arrays.o S4Vectors_stubs.o abind.o array_selection.o dim_tuning_utils.o -L/home/hpages/bbs-3.18-bioc-R41/R/lib -lR
installing to /home/hpages/bbs-3.18-bioc-R41/R/site-library/00LOCK-S4Arrays/00new/S4Arrays/libs
** R
** byte-compile and prepare package for lazy loading
Creating a new generic function for ‘rowsum’ in package ‘S4Arrays’
Creating a new generic function for ‘abind’ in package ‘S4Arrays’
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (S4Arrays)