| Back to Using R 4.1.3 to BUILD/CHECK a small subset of 3.18 packages |
This page was generated on 2024-03-08 16:41:47 -0500 (Fri, 08 Mar 2024).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| nebbiolo2 | Linux (Ubuntu 22.04.3 LTS) | x86_64 | 4.1.3 (2022-03-10) -- "One Push-Up" | 655 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
| Package 14/118 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | |||||||
| Biobase 2.62.0 (landing page) Bioconductor Package Maintainer
| nebbiolo2 | Linux (Ubuntu 22.04.3 LTS) / x86_64 | OK | OK | WARNINGS | ||||||||
|
To the developers/maintainers of the Biobase package: - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information. |
| Package: Biobase |
| Version: 2.62.0 |
| Command: /home/hpages/bbs-3.18-bioc-R41/R/bin/R CMD INSTALL Biobase |
| StartedAt: 2024-03-08 15:28:43 -0500 (Fri, 08 Mar 2024) |
| EndedAt: 2024-03-08 15:28:56 -0500 (Fri, 08 Mar 2024) |
| EllapsedTime: 13.2 seconds |
| RetCode: 0 |
| Status: OK |
############################################################################## ############################################################################## ### ### Running command: ### ### /home/hpages/bbs-3.18-bioc-R41/R/bin/R CMD INSTALL Biobase ### ############################################################################## ############################################################################## * installing to library ‘/home/hpages/bbs-3.18-bioc-R41/R/site-library’ * installing *source* package ‘Biobase’ ... ** using staged installation ** libs gcc -I"/home/hpages/bbs-3.18-bioc-R41/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -Wall -c Rinit.c -o Rinit.o gcc -I"/home/hpages/bbs-3.18-bioc-R41/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -Wall -c anyMissing.c -o anyMissing.o gcc -I"/home/hpages/bbs-3.18-bioc-R41/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -Wall -c envir.c -o envir.o gcc -I"/home/hpages/bbs-3.18-bioc-R41/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -Wall -c matchpt.c -o matchpt.o gcc -I"/home/hpages/bbs-3.18-bioc-R41/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -Wall -c rowMedians.c -o rowMedians.o gcc -I"/home/hpages/bbs-3.18-bioc-R41/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -Wall -c sublist_extract.c -o sublist_extract.o gcc -shared -L/home/hpages/bbs-3.18-bioc-R41/R/lib -L/usr/local/lib -o Biobase.so Rinit.o anyMissing.o envir.o matchpt.o rowMedians.o sublist_extract.o -L/home/hpages/bbs-3.18-bioc-R41/R/lib -lR installing to /home/hpages/bbs-3.18-bioc-R41/R/site-library/00LOCK-Biobase/00new/Biobase/libs ** R ** data ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (Biobase)