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This page was generated on 2023-05-26 11:06:45 -0400 (Fri, 26 May 2023).

HostnameOSArch (*)R versionInstalled pkgs
nebbiolo2Linux (Ubuntu 22.04.2 LTS)x86_644.3.0 RC (2023-04-18 r84287) -- "Already Tomorrow" 4587
palomino4Windows Server 2022 Datacenterx644.3.0 RC (2023-04-18 r84287 ucrt) -- "Already Tomorrow" 4336
lconwaymacOS 12.6.5 Montereyx86_644.3.0 RC (2023-04-13 r84266) -- "Already Tomorrow" 4337
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

CHECK results for rRDP on palomino4


To the developers/maintainers of the rRDP package:
- Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/rRDP.git to reflect on this report. See Troubleshooting Build Report for more information.

- Use the following Renviron settings to reproduce errors and warnings.

Note: If "R CMD check" recently failed on the Linux builder over a missing dependency, add the missing dependency to "Suggests" in your DESCRIPTION file. See the Renviron.bioc for details.

raw results

Package 1739/2197HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
rRDP 1.35.0  (landing page)
Michael Hahsler
Snapshot Date: 2023-05-25 14:00:07 -0400 (Thu, 25 May 2023)
git_url: https://git.bioconductor.org/packages/rRDP
git_branch: devel
git_last_commit: ed5b7f3
git_last_commit_date: 2023-04-25 10:34:48 -0400 (Tue, 25 Apr 2023)
nebbiolo2Linux (Ubuntu 22.04.2 LTS) / x86_64  OK    OK    OK  UNNEEDED, same version is already published
palomino4Windows Server 2022 Datacenter / x64  OK    OK    OK    OK  UNNEEDED, same version is already published
lconwaymacOS 12.6.5 Monterey / x86_64  OK    OK    OK    OK  UNNEEDED, same version is already published

Summary

Package: rRDP
Version: 1.35.0
Command: F:\biocbuild\bbs-3.18-bioc\R\bin\R.exe CMD check --no-multiarch --install=check:rRDP.install-out.txt --library=F:\biocbuild\bbs-3.18-bioc\R\library --no-vignettes --timings rRDP_1.35.0.tar.gz
StartedAt: 2023-05-26 05:30:56 -0400 (Fri, 26 May 2023)
EndedAt: 2023-05-26 05:32:27 -0400 (Fri, 26 May 2023)
EllapsedTime: 90.2 seconds
RetCode: 0
Status:   OK  
CheckDir: rRDP.Rcheck
Warnings: 0

Command output

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###
### Running command:
###
###   F:\biocbuild\bbs-3.18-bioc\R\bin\R.exe CMD check --no-multiarch --install=check:rRDP.install-out.txt --library=F:\biocbuild\bbs-3.18-bioc\R\library --no-vignettes --timings rRDP_1.35.0.tar.gz
###
##############################################################################
##############################################################################


* using log directory 'F:/biocbuild/bbs-3.18-bioc/meat/rRDP.Rcheck'
* using R version 4.3.0 RC (2023-04-18 r84287 ucrt)
* using platform: x86_64-w64-mingw32 (64-bit)
* R was compiled by
    gcc.exe (GCC) 12.2.0
    GNU Fortran (GCC) 12.2.0
* running under: Windows Server 2022 x64 (build 20348)
* using session charset: UTF-8
* using option '--no-vignettes'
* checking for file 'rRDP/DESCRIPTION' ... OK
* this is package 'rRDP' version '1.35.0'
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'rRDP' can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking 'build' directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking sizes of PDF files under 'inst/doc' ... OK
* checking files in 'vignettes' ... OK
* checking examples ... OK
Examples with CPU (user + system) or elapsed time > 5s
    user system elapsed
RDP 0.11   0.01    8.99
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in 'inst/doc' ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE

Status: OK


Installation output

rRDP.Rcheck/00install.out

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###
### Running command:
###
###   F:\biocbuild\bbs-3.18-bioc\R\bin\R.exe CMD INSTALL rRDP
###
##############################################################################
##############################################################################


* installing to library 'F:/biocbuild/bbs-3.18-bioc/R/library'
* installing *source* package 'rRDP' ...
** using staged installation
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (rRDP)

Tests output


Example timings

rRDP.Rcheck/rRDP-Ex.timings

nameusersystemelapsed
RDP0.110.018.99
accuracy0.020.003.78
annotation0.030.000.72