Back to Multiple platform build/check report for BioC 3.18:   simplified   long
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This page was generated on 2023-05-16 11:07:09 -0400 (Tue, 16 May 2023).

HostnameOSArch (*)R versionInstalled pkgs
nebbiolo2Linux (Ubuntu 22.04.2 LTS)x86_644.3.0 RC (2023-04-18 r84287) -- "Already Tomorrow" 4560
palomino4Windows Server 2022 Datacenterx644.3.0 RC (2023-04-18 r84287 ucrt) -- "Already Tomorrow" 4333
lconwaymacOS 12.6.5 Montereyx86_644.3.0 RC (2023-04-13 r84266) -- "Already Tomorrow" 4336
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

CHECK results for plotGrouper on palomino4


To the developers/maintainers of the plotGrouper package:
- Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/plotGrouper.git to reflect on this report. See Troubleshooting Build Report for more information.

- Use the following Renviron settings to reproduce errors and warnings.

Note: If "R CMD check" recently failed on the Linux builder over a missing dependency, add the missing dependency to "Suggests" in your DESCRIPTION file. See the Renviron.bioc for details.

raw results

Package 1509/2197HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
plotGrouper 1.19.0  (landing page)
John D. Gagnon
Snapshot Date: 2023-05-15 14:00:08 -0400 (Mon, 15 May 2023)
git_url: https://git.bioconductor.org/packages/plotGrouper
git_branch: devel
git_last_commit: b8df35b
git_last_commit_date: 2023-04-25 11:04:03 -0400 (Tue, 25 Apr 2023)
nebbiolo2Linux (Ubuntu 22.04.2 LTS) / x86_64  OK    OK    OK  UNNEEDED, same version is already published
palomino4Windows Server 2022 Datacenter / x64  OK    OK    WARNINGS    OK  UNNEEDED, same version is already published
lconwaymacOS 12.6.5 Monterey / x86_64  OK    OK    OK    OK  UNNEEDED, same version is already published

Summary

Package: plotGrouper
Version: 1.19.0
Command: F:\biocbuild\bbs-3.18-bioc\R\bin\R.exe CMD check --no-multiarch --install=check:plotGrouper.install-out.txt --library=F:\biocbuild\bbs-3.18-bioc\R\library --no-vignettes --timings plotGrouper_1.19.0.tar.gz
StartedAt: 2023-05-16 04:53:15 -0400 (Tue, 16 May 2023)
EndedAt: 2023-05-16 04:54:11 -0400 (Tue, 16 May 2023)
EllapsedTime: 55.8 seconds
RetCode: 0
Status:   WARNINGS  
CheckDir: plotGrouper.Rcheck
Warnings: 1

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   F:\biocbuild\bbs-3.18-bioc\R\bin\R.exe CMD check --no-multiarch --install=check:plotGrouper.install-out.txt --library=F:\biocbuild\bbs-3.18-bioc\R\library --no-vignettes --timings plotGrouper_1.19.0.tar.gz
###
##############################################################################
##############################################################################


* using log directory 'F:/biocbuild/bbs-3.18-bioc/meat/plotGrouper.Rcheck'
* using R version 4.3.0 RC (2023-04-18 r84287 ucrt)
* using platform: x86_64-w64-mingw32 (64-bit)
* R was compiled by
    gcc.exe (GCC) 12.2.0
    GNU Fortran (GCC) 12.2.0
* running under: Windows Server 2022 x64 (build 20348)
* using session charset: UTF-8
* using option '--no-vignettes'
* checking for file 'plotGrouper/DESCRIPTION' ... OK
* this is package 'plotGrouper' version '1.19.0'
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'plotGrouper' can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking 'build' directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... WARNING
Warning in file 'R/readData.R':
  unable to translate '<U+2014>' to native encoding
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... NOTE
gplot: no visible binding for global variable 'max_value'
gplot: no visible binding for global variable 'max_error'
Undefined global functions or variables:
  max_error max_value
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking files in 'vignettes' ... OK
* checking examples ... OK
* checking for unstated dependencies in 'tests' ... OK
* checking tests ...
  Running 'testthat.R'
 OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in 'inst/doc' ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE

Status: 1 WARNING, 1 NOTE
See
  'F:/biocbuild/bbs-3.18-bioc/meat/plotGrouper.Rcheck/00check.log'
for details.



Installation output

plotGrouper.Rcheck/00install.out

##############################################################################
##############################################################################
###
### Running command:
###
###   F:\biocbuild\bbs-3.18-bioc\R\bin\R.exe CMD INSTALL plotGrouper
###
##############################################################################
##############################################################################


* installing to library 'F:/biocbuild/bbs-3.18-bioc/R/library'
* installing *source* package 'plotGrouper' ...
** using staged installation
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (plotGrouper)

Tests output

plotGrouper.Rcheck/tests/testthat.Rout


R version 4.3.0 RC (2023-04-18 r84287 ucrt) -- "Already Tomorrow"
Copyright (C) 2023 The R Foundation for Statistical Computing
Platform: x86_64-w64-mingw32/x64 (64-bit)

R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under certain conditions.
Type 'license()' or 'licence()' for distribution details.

R is a collaborative project with many contributors.
Type 'contributors()' for more information and
'citation()' on how to cite R or R packages in publications.

Type 'demo()' for some demos, 'help()' for on-line help, or
'help.start()' for an HTML browser interface to help.
Type 'q()' to quit R.

> library(testthat)
> library(plotGrouper)
> 
> test_check("plotGrouper")
[ FAIL 0 | WARN 0 | SKIP 4 | PASS 0 ]

══ Skipped tests ═══════════════════════════════════════════════════════════════
• On Windows (4)

[ FAIL 0 | WARN 0 | SKIP 4 | PASS 0 ]
> 
> proc.time()
   user  system elapsed 
   1.75    0.34    2.06 

Example timings

plotGrouper.Rcheck/plotGrouper-Ex.timings

nameusersystemelapsed
gplot1.560.121.69
organizeData0.070.000.06
pipe000
plotGrouper000
readData0.060.000.07
readData_example000