Back to Multiple platform build/check report for BioC 3.18:   simplified   long
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This page was generated on 2023-11-02 11:40:35 -0400 (Thu, 02 Nov 2023).

HostnameOSArch (*)R versionInstalled pkgs
nebbiolo2Linux (Ubuntu 22.04.2 LTS)x86_644.3.1 (2023-06-16) -- "Beagle Scouts" 4729
palomino4Windows Server 2022 Datacenterx644.3.1 (2023-06-16 ucrt) -- "Beagle Scouts" 4463
lconwaymacOS 12.6.5 Montereyx86_644.3.1 Patched (2023-06-17 r84564) -- "Beagle Scouts" 4478
kunpeng2Linux (openEuler 22.03 LTS-SP1)aarch644.3.1 (2023-06-16) -- "Beagle Scouts" 4464
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

Package 480/2266HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
cyanoFilter 1.10.0  (landing page)
Oluwafemi Olusoji
Snapshot Date: 2023-11-01 14:05:06 -0400 (Wed, 01 Nov 2023)
git_url: https://git.bioconductor.org/packages/cyanoFilter
git_branch: RELEASE_3_18
git_last_commit: ccfe340
git_last_commit_date: 2023-10-24 11:31:46 -0400 (Tue, 24 Oct 2023)
nebbiolo2Linux (Ubuntu 22.04.2 LTS) / x86_64  OK    OK    OK  UNNEEDED, same version is already published
palomino4Windows Server 2022 Datacenter / x64  OK    OK    OK    OK  UNNEEDED, same version is already published
lconwaymacOS 12.6.5 Monterey / x86_64  OK    OK    OK    OK  UNNEEDED, same version is already published
kjohnson1macOS 13.6.1 Ventura / arm64see weekly results here
kunpeng2Linux (openEuler 22.03 LTS-SP1) / aarch64  OK    OK    OK  

CHECK results for cyanoFilter on kunpeng2


To the developers/maintainers of the cyanoFilter package:
- Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/cyanoFilter.git to reflect on this report. See Troubleshooting Build Report for more information.
- Use the following Renviron settings to reproduce errors and warnings.
- If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information.
- See Martin Grigorov's blog post for how to debug Linux ARM64 related issues on a x86_64 host.

raw results


Summary

Package: cyanoFilter
Version: 1.10.0
Command: /home/biocbuild/R/R-4.3.1/bin/R CMD check --install=check:cyanoFilter.install-out.txt --library=/home/biocbuild/R/R-4.3.1/site-library --no-vignettes --timings cyanoFilter_1.10.0.tar.gz
StartedAt: 2023-11-02 09:43:06 -0000 (Thu, 02 Nov 2023)
EndedAt: 2023-11-02 09:45:09 -0000 (Thu, 02 Nov 2023)
EllapsedTime: 122.9 seconds
RetCode: 0
Status:   OK  
CheckDir: cyanoFilter.Rcheck
Warnings: 0

Command output

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### Running command:
###
###   /home/biocbuild/R/R-4.3.1/bin/R CMD check --install=check:cyanoFilter.install-out.txt --library=/home/biocbuild/R/R-4.3.1/site-library --no-vignettes --timings cyanoFilter_1.10.0.tar.gz
###
##############################################################################
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* using log directory ‘/home/biocbuild/bbs-3.18-bioc/meat/cyanoFilter.Rcheck’
* using R version 4.3.1 (2023-06-16)
* using platform: aarch64-unknown-linux-gnu (64-bit)
* R was compiled by
    gcc (GCC) 10.3.1
    GNU Fortran (GCC) 10.3.1
* running under: openEuler 22.03 (LTS-SP1)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘cyanoFilter/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘cyanoFilter’ version ‘1.10.0’
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘cyanoFilter’ can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking loading without being on the library search path ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... OK
Examples with CPU (user + system) or elapsed time > 5s
           user system elapsed
gateFunc 12.835  0.466  10.578
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in ‘inst/doc’ ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE

Status: OK


Installation output

cyanoFilter.Rcheck/00install.out

##############################################################################
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###
### Running command:
###
###   /home/biocbuild/R/R-4.3.1/bin/R CMD INSTALL cyanoFilter
###
##############################################################################
##############################################################################


* installing to library ‘/home/biocbuild/R/R-4.3.1/site-library’
* installing *source* package ‘cyanoFilter’ ...
** using staged installation
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (cyanoFilter)

Tests output


Example timings

cyanoFilter.Rcheck/cyanoFilter-Ex.timings

nameusersystemelapsed
MarginEvents1.1560.0371.265
PhytoFilter0.8310.0280.861
PhytopFilter1.0770.0481.128
accTest0.4760.0110.491
accuracy0.5630.0080.573
cellmargin0.4100.0040.416
clusterExtract1.1020.0201.126
clusterExtractp1.1260.0201.149
debrisNc0.4390.0160.456
fullFlowframe-MarginEvents-method0.4200.0240.446
fullFlowframe-PhytopFilter-method0.8310.0200.853
fullFlowframe0.4020.0040.406
gateFunc12.835 0.46610.578
ggpairsDens4.1010.1764.299
ggplotDens0.6890.0350.725
ggplotDens21.1560.0121.172
goodfcs0.0640.0010.084
is.DebrisFilter0.0010.0000.001
is.MarginEvents000
is.PhytopFilter000
is.flowFrame0.0010.0000.000
is.flowSet0.0000.0000.001
lnTrans0.2880.0110.301
newFlowframe0.2980.0280.330
nona0.1400.0040.144
noneg0.2540.0240.278
oneDgate0.2990.0160.315
pairsPlot2.2560.0562.317
pigmentGate0.3800.0160.396
reducedFlowframe-MarginEvents-method0.7120.0520.766
reducedFlowframe0.4180.0080.427
retain0.0220.0000.022
rowNumbers0.2790.0200.300
summaries-DebrisFilter-method0.3990.0040.403
summaries-MarginEvents-method0.4090.0040.413
summaries-PhytopFilter-method1.1190.0121.134
summaries0.4200.0120.433