Pierrick Roger
| Snapshot Date: 2023-11-01 14:05:06 -0400 (Wed, 01 Nov 2023) |
| git_url: https://git.bioconductor.org/packages/biodbHmdb |
| git_branch: RELEASE_3_18 |
| git_last_commit: 0efcfbf |
| git_last_commit_date: 2023-10-24 11:38:18 -0400 (Tue, 24 Oct 2023) |
| Back to Multiple platform build/check report for BioC 3.18: simplified long |
|
This page was generated on 2023-11-02 11:40:27 -0400 (Thu, 02 Nov 2023).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| nebbiolo2 | Linux (Ubuntu 22.04.2 LTS) | x86_64 | 4.3.1 (2023-06-16) -- "Beagle Scouts" | 4729 |
| palomino4 | Windows Server 2022 Datacenter | x64 | 4.3.1 (2023-06-16 ucrt) -- "Beagle Scouts" | 4463 |
| lconway | macOS 12.6.5 Monterey | x86_64 | 4.3.1 Patched (2023-06-17 r84564) -- "Beagle Scouts" | 4478 |
| kunpeng2 | Linux (openEuler 22.03 LTS-SP1) | aarch64 | 4.3.1 (2023-06-16) -- "Beagle Scouts" | 4464 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
| Package 198/2266 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| biodbHmdb 1.8.0 (landing page) Pierrick Roger
| nebbiolo2 | Linux (Ubuntu 22.04.2 LTS) / x86_64 | OK | OK | WARNINGS | | ||||||||
| palomino4 | Windows Server 2022 Datacenter / x64 | OK | OK | WARNINGS | OK | | ||||||||
| lconway | macOS 12.6.5 Monterey / x86_64 | OK | OK | WARNINGS | OK | | ||||||||
| kjohnson1 | macOS 13.6.1 Ventura / arm64 | see weekly results here | ||||||||||||
| kunpeng2 | Linux (openEuler 22.03 LTS-SP1) / aarch64 | OK | OK | WARNINGS | ||||||||||
|
To the developers/maintainers of the biodbHmdb package: - Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/biodbHmdb.git to reflect on this report. See Troubleshooting Build Report for more information. - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information. - See Martin Grigorov's blog post for how to debug Linux ARM64 related issues on a x86_64 host. |
| Package: biodbHmdb |
| Version: 1.8.0 |
| Command: /home/biocbuild/R/R-4.3.1/bin/R CMD check --install=check:biodbHmdb.install-out.txt --library=/home/biocbuild/R/R-4.3.1/site-library --no-vignettes --timings biodbHmdb_1.8.0.tar.gz |
| StartedAt: 2023-11-02 08:44:35 -0000 (Thu, 02 Nov 2023) |
| EndedAt: 2023-11-02 08:46:11 -0000 (Thu, 02 Nov 2023) |
| EllapsedTime: 96.0 seconds |
| RetCode: 0 |
| Status: WARNINGS |
| CheckDir: biodbHmdb.Rcheck |
| Warnings: 2 |
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###
### Running command:
###
### /home/biocbuild/R/R-4.3.1/bin/R CMD check --install=check:biodbHmdb.install-out.txt --library=/home/biocbuild/R/R-4.3.1/site-library --no-vignettes --timings biodbHmdb_1.8.0.tar.gz
###
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* using log directory ‘/home/biocbuild/bbs-3.18-bioc/meat/biodbHmdb.Rcheck’
* using R version 4.3.1 (2023-06-16)
* using platform: aarch64-unknown-linux-gnu (64-bit)
* R was compiled by
gcc (GCC) 10.3.1
GNU Fortran (GCC) 10.3.1
* running under: openEuler 22.03 (LTS-SP1)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘biodbHmdb/DESCRIPTION’ ... OK
* this is package ‘biodbHmdb’ version ‘1.8.0’
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘biodbHmdb’ can be installed ... WARNING
Found the following significant warnings:
EntryMaker.hpp:23:21: warning: ‘EntryMaker::accession_tag’ will be initialized after [-Wreorder]
EntryMaker.hpp:22:14: warning: ‘bool EntryMaker::closed’ [-Wreorder]
EntryMaker.cpp:5:1: warning: when initialized here [-Wreorder]
See ‘/home/biocbuild/bbs-3.18-bioc/meat/biodbHmdb.Rcheck/00install.out’ for details.
* used C++ compiler: ‘g++ (GCC) 10.3.1’
* checking installed package size ... NOTE
installed size is 9.2Mb
sub-directories of 1Mb or more:
libs 8.6Mb
* checking package directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking loading without being on the library search path ... OK
* checking dependencies in R code ... NOTE
Namespace in Imports field not imported from: ‘zip’
All declared Imports should be used.
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking for missing documentation entries ... WARNING
Undocumented code objects:
‘HmdbMetabolitesConn’ ‘HmdbMetabolitesEntry’ ‘hmdbToSqlite’
All user-level objects in a package should have documentation entries.
See chapter ‘Writing R documentation files’ in the ‘Writing R
Extensions’ manual.
* checking line endings in C/C++/Fortran sources/headers ... OK
* checking compiled code ... NOTE
Note: information on .o files is not available
* checking files in ‘vignettes’ ... OK
* checking examples ... NONE
* checking for unstated dependencies in ‘tests’ ... OK
* checking tests ...
Running ‘testthat.R’
OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in ‘inst/doc’ ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE
Status: 2 WARNINGs, 3 NOTEs
See
‘/home/biocbuild/bbs-3.18-bioc/meat/biodbHmdb.Rcheck/00check.log’
for details.
biodbHmdb.Rcheck/00install.out
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###
### Running command:
###
### /home/biocbuild/R/R-4.3.1/bin/R CMD INSTALL biodbHmdb
###
##############################################################################
##############################################################################
* installing to library ‘/home/biocbuild/R/R-4.3.1/site-library’
* installing *source* package ‘biodbHmdb’ ...
** using staged installation
** libs
using C++ compiler: ‘g++ (GCC) 10.3.1’
g++ -std=gnu++17 -I"/home/biocbuild/R/R-4.3.1/include" -DNDEBUG -I'/home/biocbuild/R/R-4.3.1/site-library/Rcpp/include' -I'/home/biocbuild/R/R-4.3.1/site-library/testthat/include' -I/usr/local/include -fPIC -g -O2 -Wall -c EntryMaker.cpp -o EntryMaker.o
In file included from EntryMaker.cpp:1:
EntryMaker.hpp: In constructor ‘EntryMaker::EntryMaker()’:
EntryMaker.hpp:23:21: warning: ‘EntryMaker::accession_tag’ will be initialized after [-Wreorder]
23 | TagDetector accession_tag;
| ^~~~~~~~~~~~~
EntryMaker.hpp:22:14: warning: ‘bool EntryMaker::closed’ [-Wreorder]
22 | bool closed;
| ^~~~~~
EntryMaker.cpp:5:1: warning: when initialized here [-Wreorder]
5 | EntryMaker::EntryMaker() :
| ^~~~~~~~~~
g++ -std=gnu++17 -I"/home/biocbuild/R/R-4.3.1/include" -DNDEBUG -I'/home/biocbuild/R/R-4.3.1/site-library/Rcpp/include' -I'/home/biocbuild/R/R-4.3.1/site-library/testthat/include' -I/usr/local/include -fPIC -g -O2 -Wall -c FileEntryMaker.cpp -o FileEntryMaker.o
g++ -std=gnu++17 -I"/home/biocbuild/R/R-4.3.1/include" -DNDEBUG -I'/home/biocbuild/R/R-4.3.1/site-library/Rcpp/include' -I'/home/biocbuild/R/R-4.3.1/site-library/testthat/include' -I/usr/local/include -fPIC -g -O2 -Wall -c RcppExports.cpp -o RcppExports.o
g++ -std=gnu++17 -I"/home/biocbuild/R/R-4.3.1/include" -DNDEBUG -I'/home/biocbuild/R/R-4.3.1/site-library/Rcpp/include' -I'/home/biocbuild/R/R-4.3.1/site-library/testthat/include' -I/usr/local/include -fPIC -g -O2 -Wall -c StringEnrtryMaker.cpp -o StringEnrtryMaker.o
g++ -std=gnu++17 -I"/home/biocbuild/R/R-4.3.1/include" -DNDEBUG -I'/home/biocbuild/R/R-4.3.1/site-library/Rcpp/include' -I'/home/biocbuild/R/R-4.3.1/site-library/testthat/include' -I/usr/local/include -fPIC -g -O2 -Wall -c TagDetector.cpp -o TagDetector.o
g++ -std=gnu++17 -I"/home/biocbuild/R/R-4.3.1/include" -DNDEBUG -I'/home/biocbuild/R/R-4.3.1/site-library/Rcpp/include' -I'/home/biocbuild/R/R-4.3.1/site-library/testthat/include' -I/usr/local/include -fPIC -g -O2 -Wall -c XmlSplitter.cpp -o XmlSplitter.o
g++ -std=gnu++17 -I"/home/biocbuild/R/R-4.3.1/include" -DNDEBUG -I'/home/biocbuild/R/R-4.3.1/site-library/Rcpp/include' -I'/home/biocbuild/R/R-4.3.1/site-library/testthat/include' -I/usr/local/include -fPIC -g -O2 -Wall -c extractXmlEntries.cpp -o extractXmlEntries.o
g++ -std=gnu++17 -I"/home/biocbuild/R/R-4.3.1/include" -DNDEBUG -I'/home/biocbuild/R/R-4.3.1/site-library/Rcpp/include' -I'/home/biocbuild/R/R-4.3.1/site-library/testthat/include' -I/usr/local/include -fPIC -g -O2 -Wall -c test-100-TagDetector.cpp -o test-100-TagDetector.o
g++ -std=gnu++17 -I"/home/biocbuild/R/R-4.3.1/include" -DNDEBUG -I'/home/biocbuild/R/R-4.3.1/site-library/Rcpp/include' -I'/home/biocbuild/R/R-4.3.1/site-library/testthat/include' -I/usr/local/include -fPIC -g -O2 -Wall -c test-150-StringEntryMaker.cpp -o test-150-StringEntryMaker.o
g++ -std=gnu++17 -I"/home/biocbuild/R/R-4.3.1/include" -DNDEBUG -I'/home/biocbuild/R/R-4.3.1/site-library/Rcpp/include' -I'/home/biocbuild/R/R-4.3.1/site-library/testthat/include' -I/usr/local/include -fPIC -g -O2 -Wall -c test-200-XmlSplitter.cpp -o test-200-XmlSplitter.o
g++ -std=gnu++17 -I"/home/biocbuild/R/R-4.3.1/include" -DNDEBUG -I'/home/biocbuild/R/R-4.3.1/site-library/Rcpp/include' -I'/home/biocbuild/R/R-4.3.1/site-library/testthat/include' -I/usr/local/include -fPIC -g -O2 -Wall -c test-runner.cpp -o test-runner.o
g++ -std=gnu++17 -shared -L/home/biocbuild/R/R-4.3.1/lib -L/usr/local/lib -o biodbHmdb.so EntryMaker.o FileEntryMaker.o RcppExports.o StringEnrtryMaker.o TagDetector.o XmlSplitter.o extractXmlEntries.o test-100-TagDetector.o test-150-StringEntryMaker.o test-200-XmlSplitter.o test-runner.o -L/home/biocbuild/R/R-4.3.1/lib -lR
installing to /home/biocbuild/R/R-4.3.1/site-library/00LOCK-biodbHmdb/00new/biodbHmdb/libs
** R
** inst
** byte-compile and prepare package for lazy loading
** help
No man pages found in package ‘biodbHmdb’
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (biodbHmdb)
biodbHmdb.Rcheck/tests/testthat.Rout
R version 4.3.1 (2023-06-16) -- "Beagle Scouts"
Copyright (C) 2023 The R Foundation for Statistical Computing
Platform: aarch64-unknown-linux-gnu (64-bit)
R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under certain conditions.
Type 'license()' or 'licence()' for distribution details.
R is a collaborative project with many contributors.
Type 'contributors()' for more information and
'citation()' on how to cite R or R packages in publications.
Type 'demo()' for some demos, 'help()' for on-line help, or
'help.start()' for an HTML browser interface to help.
Type 'q()' to quit R.
> # vi: fdm=marker
> # Script needed to run testthat automatically from ‘R CMD check’. See
> # testthat::test_dir documentation.
> library(testthat)
> library(biodbHmdb)
> Sys.setenv(TESTTHAT_REPORTER="summary")
> Sys.setenv(BIODB_LOG_DST="console")
> test_check("biodbHmdb")
biodb.INFO [2023-11-02 08:45:52.899][biodb::testContext]
biodb.INFO [2023-11-02 08:45:52.901][biodb::testContext] ********************************************************************************
biodb.INFO [2023-11-02 08:45:52.903][biodb::testContext] Test context - Tests of independent functions
biodb.INFO [2023-11-02 08:45:52.904][biodb::testContext] ********************************************************************************
biodb.INFO [2023-11-02 08:45:52.905][biodb::testContext]
biodb.INFO [2023-11-02 08:45:52.907][biodb::testThat]
biodb.INFO [2023-11-02 08:45:52.909][biodb::testThat] Running test function test_extractXmlEntries (" extractXmlEntries() works fine. ").
biodb.INFO [2023-11-02 08:45:52.910][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2023-11-02 08:45:52.911][biodb::testThat]
biodb.INFO [2023-11-02 08:45:53.055][biodb::testContext]
biodb.INFO [2023-11-02 08:45:53.056][biodb::testContext] ********************************************************************************
biodb.INFO [2023-11-02 08:45:53.058][biodb::testContext] Test context - Generic tests
biodb.INFO [2023-11-02 08:45:53.059][biodb::testContext] ********************************************************************************
biodb.INFO [2023-11-02 08:45:53.060][biodb::testContext]
biodb.INFO [2023-11-02 08:45:53.074][private$loadBiodbPkgsDefinitions] Loading definitions from package biodb version 1.10.0.
biodb.DEBUG[2023-11-02 08:45:53.076][self$loadDefinitions] Load definitions from file "/home/biocbuild/R/R-4.3.1/site-library/biodb/definitions.yml".
biodb.DEBUG[2023-11-02 08:45:53.087][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2023-11-02 08:45:53.088][self$getConfig()$define] Define config key allow.huge.downloads.
biodb.DEBUG[2023-11-02 08:45:53.090][self$set] Set key allow.huge.downloads to TRUE.
biodb.DEBUG[2023-11-02 08:45:53.091][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-11-02 08:45:53.092][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-11-02 08:45:53.093][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-11-02 08:45:53.095][self$getConfig()$define] Define config key autoload.extra.pkgs.
biodb.DEBUG[2023-11-02 08:45:53.121][self$set] Set key autoload.extra.pkgs to TRUE.
biodb.DEBUG[2023-11-02 08:45:53.122][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-11-02 08:45:53.123][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-11-02 08:45:53.125][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-11-02 08:45:53.126][self$getConfig()$define] Define config key cache.all.requests.
biodb.DEBUG[2023-11-02 08:45:53.127][self$set] Set key cache.all.requests to TRUE.
biodb.DEBUG[2023-11-02 08:45:53.129][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-11-02 08:45:53.130][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-11-02 08:45:53.131][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-11-02 08:45:53.132][self$getConfig()$define] Define config key cache.directory.
biodb.DEBUG[2023-11-02 08:45:53.134][self$getConfig()$define] Define config key cache.read.only.
biodb.DEBUG[2023-11-02 08:45:53.135][self$set] Set key cache.read.only to FALSE.
biodb.DEBUG[2023-11-02 08:45:53.136][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-11-02 08:45:53.138][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-11-02 08:45:53.149][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-11-02 08:45:53.151][self$getConfig()$define] Define config key cache.subfolders.
biodb.DEBUG[2023-11-02 08:45:53.152][self$getConfig()$define] Define config key cache.system.
biodb.DEBUG[2023-11-02 08:45:53.154][self$set] Set key cache.system to TRUE.
biodb.DEBUG[2023-11-02 08:45:53.155][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-11-02 08:45:53.156][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-11-02 08:45:53.157][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-11-02 08:45:53.159][self$getConfig()$define] Define config key use.cache.for.local.db.
biodb.DEBUG[2023-11-02 08:45:53.160][self$set] Set key use.cache.for.local.db to FALSE.
biodb.DEBUG[2023-11-02 08:45:53.161][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-11-02 08:45:53.162][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-11-02 08:45:53.164][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-11-02 08:45:53.165][self$getConfig()$define] Define config key dwnld.chunk.size.
biodb.DEBUG[2023-11-02 08:45:53.167][self$getConfig()$define] Define config key dwnld.timeout.
biodb.DEBUG[2023-11-02 08:45:53.168][self$set] Set key dwnld.timeout to 3600.
biodb.DEBUG[2023-11-02 08:45:53.169][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-11-02 08:45:53.170][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-11-02 08:45:53.172][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-11-02 08:45:53.173][self$getConfig()$define] Define config key compute.fields.
biodb.DEBUG[2023-11-02 08:45:53.174][self$set] Set key compute.fields to TRUE.
biodb.DEBUG[2023-11-02 08:45:53.176][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-11-02 08:45:53.177][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-11-02 08:45:53.178][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-11-02 08:45:53.180][self$getConfig()$define] Define config key factory.cache.
biodb.DEBUG[2023-11-02 08:45:53.181][self$getConfig()$define] Define config key force.locale.
biodb.DEBUG[2023-11-02 08:45:53.183][self$set] Set key force.locale to TRUE.
biodb.DEBUG[2023-11-02 08:45:53.184][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-11-02 08:45:53.185][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-11-02 08:45:53.187][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-11-02 08:45:53.188][self$getConfig()$define] Define config key longterm.cache.subfolder.
biodb.DEBUG[2023-11-02 08:45:53.190][self$getConfig()$define] Define config key msg.caution.lvl.
biodb.DEBUG[2023-11-02 08:45:53.191][self$getConfig()$define] Define config key msg.debug.lvl.
biodb.DEBUG[2023-11-02 08:45:53.193][self$getConfig()$define] Define config key msg.info.lvl.
biodb.DEBUG[2023-11-02 08:45:53.194][self$getConfig()$define] Define config key multival.field.sep.
biodb.DEBUG[2023-11-02 08:45:53.196][self$set] Set key multival.field.sep to ";".
biodb.DEBUG[2023-11-02 08:45:53.197][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-11-02 08:45:53.198][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-11-02 08:45:53.200][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-11-02 08:45:53.201][self$getConfig()$define] Define config key intra.field.name.sep.
biodb.DEBUG[2023-11-02 08:45:53.203][self$set] Set key intra.field.name.sep to ".".
biodb.DEBUG[2023-11-02 08:45:53.204][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-11-02 08:45:53.206][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-11-02 08:45:53.207][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-11-02 08:45:53.208][self$getConfig()$define] Define config key entries.sep.
biodb.DEBUG[2023-11-02 08:45:53.210][self$set] Set key entries.sep to "|".
biodb.DEBUG[2023-11-02 08:45:53.211][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-11-02 08:45:53.213][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-11-02 08:45:53.214][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-11-02 08:45:53.215][self$getConfig()$define] Define config key offline.
biodb.DEBUG[2023-11-02 08:45:53.217][self$set] Set key offline to FALSE.
biodb.DEBUG[2023-11-02 08:45:53.218][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-11-02 08:45:53.220][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-11-02 08:45:53.221][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-11-02 08:45:53.223][self$getConfig()$define] Define config key persistent.cache.impl.
biodb.DEBUG[2023-11-02 08:45:53.224][self$set] Set key persistent.cache.impl to "custom".
biodb.DEBUG[2023-11-02 08:45:53.226][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-11-02 08:45:53.227][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-11-02 08:45:53.228][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-11-02 08:45:53.230][self$getConfig()$define] Define config key proton.mass.
biodb.DEBUG[2023-11-02 08:45:53.231][self$set] Set key proton.mass to 1.0072765.
biodb.DEBUG[2023-11-02 08:45:53.233][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-11-02 08:45:53.234][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-11-02 08:45:53.235][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-11-02 08:45:53.237][self$getConfig()$define] Define config key shortterm.cache.subfolder.
biodb.DEBUG[2023-11-02 08:45:53.238][self$getConfig()$define] Define config key svn.binary.path.
biodb.DEBUG[2023-11-02 08:45:53.244][self$set] Set key svn.binary.path to "".
biodb.DEBUG[2023-11-02 08:45:53.246][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-11-02 08:45:53.247][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-11-02 08:45:53.249][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-11-02 08:45:53.250][self$getConfig()$define] Define config key test.functions.
biodb.DEBUG[2023-11-02 08:45:53.252][self$getConfig()$define] Define config key useragent.
biodb.DEBUG[2023-11-02 08:45:53.253][self$set] Set key useragent to "R Bioconductor biodb library.".
biodb.DEBUG[2023-11-02 08:45:53.255][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-11-02 08:45:53.256][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-11-02 08:45:53.257][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-11-02 08:45:53.262][self$getDbsInfo()$define] Define connector comp.csv.file.
biodb.DEBUG[2023-11-02 08:45:53.311][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2023-11-02 08:45:53.335][self$setPropertyValue] Setting property "description" to "A connector to handle a compound database stored inside a CSV file. It is possible to choose the separator for the CSV file, as well as match the column names with the biodb entry fields.".
biodb.DEBUG[2023-11-02 08:45:53.336][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2023-11-02 08:45:53.338][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2023-11-02 08:45:53.339][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2023-11-02 08:45:53.341][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2023-11-02 08:45:53.343][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2023-11-02 08:45:53.344][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2023-11-02 08:45:53.346][self$setPropertyValue] Setting property "entry.content.type" to "tsv".
biodb.DEBUG[2023-11-02 08:45:53.347][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2023-11-02 08:45:53.349][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2023-11-02 08:45:53.350][self$setPropertyValue] Setting property "name" to "Compound CSV File".
biodb.DEBUG[2023-11-02 08:45:53.352][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2023-11-02 08:45:53.353][self$setPropertyValue]
biodb.DEBUG[2023-11-02 08:45:53.355][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2023-11-02 08:45:53.356][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2023-11-02 08:45:53.356][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2023-11-02 08:45:53.356][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2023-11-02 08:45:53.356][self$setPropertyValue] Setting property "searchable.fields" to "average.mass".
biodb.DEBUG[2023-11-02 08:45:53.356][self$setPropertyValue] Setting property "searchable.fields" to "nominal.mass".
biodb.DEBUG[2023-11-02 08:45:53.358][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2023-11-02 08:45:53.359][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2023-11-02 08:45:53.360][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2023-11-02 08:45:53.362][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2023-11-02 08:45:53.363][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2023-11-02 08:45:53.364][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2023-11-02 08:45:53.366][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2023-11-02 08:45:53.367][self$setPropertyValue]
biodb.DEBUG[2023-11-02 08:45:53.369][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2023-11-02 08:45:53.370][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2023-11-02 08:45:53.371][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2023-11-02 08:45:53.373][self$setPropertyValue]
biodb.DEBUG[2023-11-02 08:45:53.375][self$getDbsInfo()$define] Define connector comp.sqlite.
biodb.DEBUG[2023-11-02 08:45:53.377][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2023-11-02 08:45:53.379][self$setPropertyValue] Setting property "description" to "A connector to handle a compound database stored inside an SQLite file.".
biodb.DEBUG[2023-11-02 08:45:53.380][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2023-11-02 08:45:53.382][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2023-11-02 08:45:53.383][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2023-11-02 08:45:53.385][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2023-11-02 08:45:53.386][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2023-11-02 08:45:53.387][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2023-11-02 08:45:53.389][self$setPropertyValue] Setting property "entry.content.type" to "list".
biodb.DEBUG[2023-11-02 08:45:53.390][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2023-11-02 08:45:53.392][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2023-11-02 08:45:53.401][self$setPropertyValue] Setting property "name" to "Compound SQLite".
biodb.DEBUG[2023-11-02 08:45:53.403][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2023-11-02 08:45:53.404][self$setPropertyValue]
biodb.DEBUG[2023-11-02 08:45:53.406][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2023-11-02 08:45:53.407][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2023-11-02 08:45:53.407][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2023-11-02 08:45:53.407][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2023-11-02 08:45:53.407][self$setPropertyValue] Setting property "searchable.fields" to "average.mass".
biodb.DEBUG[2023-11-02 08:45:53.407][self$setPropertyValue] Setting property "searchable.fields" to "nominal.mass".
biodb.DEBUG[2023-11-02 08:45:53.408][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2023-11-02 08:45:53.410][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2023-11-02 08:45:53.411][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2023-11-02 08:45:53.412][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2023-11-02 08:45:53.414][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2023-11-02 08:45:53.415][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2023-11-02 08:45:53.417][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2023-11-02 08:45:53.418][self$setPropertyValue]
biodb.DEBUG[2023-11-02 08:45:53.419][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2023-11-02 08:45:53.421][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2023-11-02 08:45:53.422][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2023-11-02 08:45:53.423][self$setPropertyValue]
biodb.DEBUG[2023-11-02 08:45:53.425][self$getDbsInfo()$define] Define connector mass.csv.file.
biodb.DEBUG[2023-11-02 08:45:53.428][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2023-11-02 08:45:53.429][self$setPropertyValue] Setting property "description" to "A connector to handle a mass spectra database stored inside a CSV file. It is possible to choose the separator for the CSV file, as well as match the column names with the biodb entry fields..".
biodb.DEBUG[2023-11-02 08:45:53.430][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2023-11-02 08:45:53.432][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2023-11-02 08:45:53.433][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2023-11-02 08:45:53.435][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2023-11-02 08:45:53.436][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2023-11-02 08:45:53.438][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2023-11-02 08:45:53.439][self$setPropertyValue] Setting property "entry.content.type" to "tsv".
biodb.DEBUG[2023-11-02 08:45:53.440][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2023-11-02 08:45:53.442][self$setPropertyValue] Setting property "mass.db" to "TRUE".
biodb.DEBUG[2023-11-02 08:45:53.443][self$setPropertyValue] Setting property "name" to "Mass spectra CSV File".
biodb.DEBUG[2023-11-02 08:45:53.445][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2023-11-02 08:45:53.446][self$setPropertyValue]
biodb.DEBUG[2023-11-02 08:45:53.447][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2023-11-02 08:45:53.449][self$setPropertyValue]
biodb.DEBUG[2023-11-02 08:45:53.450][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2023-11-02 08:45:53.452][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2023-11-02 08:45:53.453][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2023-11-02 08:45:53.454][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2023-11-02 08:45:53.456][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2023-11-02 08:45:53.457][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2023-11-02 08:45:53.459][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2023-11-02 08:45:53.460][self$setPropertyValue]
biodb.DEBUG[2023-11-02 08:45:53.461][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2023-11-02 08:45:53.463][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2023-11-02 08:45:53.464][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2023-11-02 08:45:53.465][self$setPropertyValue]
biodb.DEBUG[2023-11-02 08:45:53.467][self$getDbsInfo()$define] Define connector mass.sqlite.
biodb.DEBUG[2023-11-02 08:45:53.469][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2023-11-02 08:45:53.471][self$setPropertyValue] Setting property "description" to "A connector to handle a mass spectra database stored inside an SQLite file.".
biodb.DEBUG[2023-11-02 08:45:53.472][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2023-11-02 08:45:53.474][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2023-11-02 08:45:53.475][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2023-11-02 08:45:53.476][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2023-11-02 08:45:53.478][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2023-11-02 08:45:53.479][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2023-11-02 08:45:53.481][self$setPropertyValue] Setting property "entry.content.type" to "list".
biodb.DEBUG[2023-11-02 08:45:53.482][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2023-11-02 08:45:53.483][self$setPropertyValue] Setting property "mass.db" to "TRUE".
biodb.DEBUG[2023-11-02 08:45:53.485][self$setPropertyValue] Setting property "name" to "Mass spectra SQLite".
biodb.DEBUG[2023-11-02 08:45:53.486][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2023-11-02 08:45:53.488][self$setPropertyValue]
biodb.DEBUG[2023-11-02 08:45:53.489][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2023-11-02 08:45:53.490][self$setPropertyValue]
biodb.DEBUG[2023-11-02 08:45:53.492][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2023-11-02 08:45:53.493][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2023-11-02 08:45:53.495][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2023-11-02 08:45:53.496][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2023-11-02 08:45:53.497][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2023-11-02 08:45:53.499][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2023-11-02 08:45:53.500][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2023-11-02 08:45:53.501][self$setPropertyValue]
biodb.DEBUG[2023-11-02 08:45:53.503][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2023-11-02 08:45:53.504][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2023-11-02 08:45:53.505][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2023-11-02 08:45:53.507][self$setPropertyValue]
biodb.DEBUG[2023-11-02 08:45:53.512][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2023-11-02 08:45:53.513][FUN] Trying to call function notifyNewObservers on observer BiodbConfig.
biodb.DEBUG[2023-11-02 08:45:53.514][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-11-02 08:45:53.516][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-11-02 08:45:53.517][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2023-11-02 08:45:53.518][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-11-02 08:45:53.520][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-11-02 08:45:53.521][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-11-02 08:45:53.522][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-11-02 08:45:53.523][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2023-11-02 08:45:53.525][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-11-02 08:45:53.526][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-11-02 08:45:53.527][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-11-02 08:45:53.529][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-11-02 08:45:53.530][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2023-11-02 08:45:53.531][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-11-02 08:45:53.532][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-11-02 08:45:53.534][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-11-02 08:45:53.535][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-11-02 08:45:53.536][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2023-11-02 08:45:53.538][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-11-02 08:45:53.539][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-11-02 08:45:53.540][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-11-02 08:45:53.541][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-11-02 08:45:53.543][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2023-11-02 08:45:53.544][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-11-02 08:45:53.545][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-11-02 08:45:53.547][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-11-02 08:45:53.548][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-11-02 08:45:53.549][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2023-11-02 08:45:53.550][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-11-02 08:45:53.552][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-11-02 08:45:53.553][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-11-02 08:45:53.554][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-11-02 08:45:53.556][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2023-11-02 08:45:53.557][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-11-02 08:45:53.558][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-11-02 08:45:53.559][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-11-02 08:45:53.561][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-11-02 08:45:53.562][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2023-11-02 08:45:53.563][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-11-02 08:45:53.565][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-11-02 08:45:53.566][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-11-02 08:45:53.567][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-11-02 08:45:53.569][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2023-11-02 08:45:53.570][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-11-02 08:45:53.571][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-11-02 08:45:53.572][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-11-02 08:45:53.574][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-11-02 08:45:53.575][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2023-11-02 08:45:53.576][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-11-02 08:45:53.578][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-11-02 08:45:53.579][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-11-02 08:45:53.580][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-11-02 08:45:53.581][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2023-11-02 08:45:53.583][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-11-02 08:45:53.584][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-11-02 08:45:53.585][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-11-02 08:45:53.587][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-11-02 08:45:53.588][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2023-11-02 08:45:53.589][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-11-02 08:45:53.590][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-11-02 08:45:53.592][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-11-02 08:45:53.593][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-11-02 08:45:53.594][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2023-11-02 08:45:53.595][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-11-02 08:45:53.597][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-11-02 08:45:53.598][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-11-02 08:45:53.599][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-11-02 08:45:53.601][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2023-11-02 08:45:53.602][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-11-02 08:45:53.603][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-11-02 08:45:53.604][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-11-02 08:45:53.606][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-11-02 08:45:53.607][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2023-11-02 08:45:53.608][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-11-02 08:45:53.609][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-11-02 08:45:53.611][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-11-02 08:45:53.612][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-11-02 08:45:53.613][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2023-11-02 08:45:53.614][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-11-02 08:45:53.616][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-11-02 08:45:53.617][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-11-02 08:45:53.618][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-11-02 08:45:53.620][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2023-11-02 08:45:53.621][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-11-02 08:45:53.622][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-11-02 08:45:53.623][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-11-02 08:45:53.625][self$getEntryFields()$define] Define field accession.
biodb.DEBUG[2023-11-02 08:45:53.631][self$getEntryFields()$define] Define field description.
biodb.DEBUG[2023-11-02 08:45:53.633][self$getEntryFields()$define] Define field name.
biodb.DEBUG[2023-11-02 08:45:53.635][self$getEntryFields()$define] Define field cas.id.
biodb.DEBUG[2023-11-02 08:45:53.637][self$getEntryFields()$define] Define field chebi.id.
biodb.DEBUG[2023-11-02 08:45:53.646][self$getEntryFields()$define] Define field chemspider.id.
biodb.DEBUG[2023-11-02 08:45:53.648][self$getEntryFields()$define] Define field comp.csv.file.id.
biodb.DEBUG[2023-11-02 08:45:53.650][self$getEntryFields()$define] Define field comp.sqlite.id.
biodb.DEBUG[2023-11-02 08:45:53.652][self$getEntryFields()$define] Define field expasy.enzyme.id.
biodb.DEBUG[2023-11-02 08:45:53.654][self$getEntryFields()$define] Define field hmdb.metabolites.id.
biodb.DEBUG[2023-11-02 08:45:53.656][self$getEntryFields()$define] Define field kegg.compound.id.
biodb.DEBUG[2023-11-02 08:45:53.658][self$getEntryFields()$define] Define field kegg.genes.id.
biodb.DEBUG[2023-11-02 08:45:53.660][self$getEntryFields()$define] Define field mass.csv.file.id.
biodb.DEBUG[2023-11-02 08:45:53.662][self$getEntryFields()$define] Define field mass.sqlite.id.
biodb.DEBUG[2023-11-02 08:45:53.664][self$getEntryFields()$define] Define field ncbi.gene.id.
biodb.DEBUG[2023-11-02 08:45:53.666][self$getEntryFields()$define] Define field ncbi.pubchem.comp.id.
biodb.DEBUG[2023-11-02 08:45:53.668][self$getEntryFields()$define] Define field compound.id.
biodb.DEBUG[2023-11-02 08:45:53.670][self$getEntryFields()$define] Define field average.mass.
biodb.DEBUG[2023-11-02 08:45:53.672][self$getEntryFields()$define] Define field molecular.mass.
biodb.DEBUG[2023-11-02 08:45:53.674][self$getEntryFields()$define] Define field monoisotopic.mass.
biodb.DEBUG[2023-11-02 08:45:53.676][self$getEntryFields()$define] Define field nominal.mass.
biodb.DEBUG[2023-11-02 08:45:53.678][self$getEntryFields()$define] Define field peak.attr.
biodb.DEBUG[2023-11-02 08:45:53.680][self$getEntryFields()$define] Define field peak.comp.
biodb.DEBUG[2023-11-02 08:45:53.682][self$getEntryFields()$define] Define field peak.error.ppm.
biodb.DEBUG[2023-11-02 08:45:53.684][self$getEntryFields()$define] Define field peak.formula.
biodb.DEBUG[2023-11-02 08:45:53.686][self$getEntryFields()$define] Define field peak.intensity.
biodb.DEBUG[2023-11-02 08:45:53.688][self$getEntryFields()$define] Define field peak.mass.
biodb.DEBUG[2023-11-02 08:45:53.690][self$getEntryFields()$define] Define field peak.mztheo.
biodb.DEBUG[2023-11-02 08:45:53.692][self$getEntryFields()$define] Define field peak.mzexp.
biodb.DEBUG[2023-11-02 08:45:53.694][self$getEntryFields()$define] Define field peak.mz.
biodb.DEBUG[2023-11-02 08:45:53.696][self$getEntryFields()$define] Define field peak.relative.intensity.
biodb.DEBUG[2023-11-02 08:45:53.698][self$getEntryFields()$define] Define field peaks.
biodb.DEBUG[2023-11-02 08:45:53.700][self$getEntryFields()$define] Define field chrom.col.constructor.
biodb.DEBUG[2023-11-02 08:45:53.702][self$getEntryFields()$define] Define field chrom.col.diameter.
biodb.DEBUG[2023-11-02 08:45:53.704][self$getEntryFields()$define] Define field chrom.col.id.
biodb.DEBUG[2023-11-02 08:45:53.706][self$getEntryFields()$define] Define field chrom.col.length.
biodb.DEBUG[2023-11-02 08:45:53.708][self$getEntryFields()$define] Define field chrom.col.method.protocol.
biodb.DEBUG[2023-11-02 08:45:53.710][self$getEntryFields()$define] Define field chrom.col.name.
biodb.DEBUG[2023-11-02 08:45:53.712][self$getEntryFields()$define] Define field chrom.flow.gradient.
biodb.DEBUG[2023-11-02 08:45:53.714][self$getEntryFields()$define] Define field chrom.flow.rate.
biodb.DEBUG[2023-11-02 08:45:53.715][self$getEntryFields()$define] Define field chrom.rt.
biodb.DEBUG[2023-11-02 08:45:53.717][self$getEntryFields()$define] Define field chrom.rt.max.
biodb.DEBUG[2023-11-02 08:45:53.719][self$getEntryFields()$define] Define field chrom.rt.min.
biodb.DEBUG[2023-11-02 08:45:53.721][self$getEntryFields()$define] Define field chrom.rt.unit.
biodb.DEBUG[2023-11-02 08:45:53.723][self$getEntryFields()$define] Define field chrom.solvent.
biodb.DEBUG[2023-11-02 08:45:53.725][self$getEntryFields()$define] Define field aa.seq.
biodb.DEBUG[2023-11-02 08:45:53.727][self$getEntryFields()$define] Define field aa.seq.length.
biodb.DEBUG[2023-11-02 08:45:53.729][self$getEntryFields()$define] Define field aa.seq.location.
biodb.DEBUG[2023-11-02 08:45:53.731][self$getEntryFields()$define] Define field nt.seq.
biodb.DEBUG[2023-11-02 08:45:53.733][self$getEntryFields()$define] Define field nt.seq.length.
biodb.DEBUG[2023-11-02 08:45:53.735][self$getEntryFields()$define] Define field ec.
biodb.DEBUG[2023-11-02 08:45:53.737][self$getEntryFields()$define] Define field organism.
biodb.DEBUG[2023-11-02 08:45:53.739][self$getEntryFields()$define] Define field pathway.class.
biodb.DEBUG[2023-11-02 08:45:53.741][self$getEntryFields()$define] Define field catalytic.activity.
biodb.DEBUG[2023-11-02 08:45:53.743][self$getEntryFields()$define] Define field cofactor.
biodb.DEBUG[2023-11-02 08:45:53.745][self$getEntryFields()$define] Define field gene.symbol.
biodb.DEBUG[2023-11-02 08:45:53.747][self$getEntryFields()$define] Define field charge.
biodb.DEBUG[2023-11-02 08:45:53.749][self$getEntryFields()$define] Define field comp.iupac.name.allowed.
biodb.DEBUG[2023-11-02 08:45:53.751][self$getEntryFields()$define] Define field comp.iupac.name.cas.
biodb.DEBUG[2023-11-02 08:45:53.753][self$getEntryFields()$define] Define field comp.iupac.name.pref.
biodb.DEBUG[2023-11-02 08:45:53.755][self$getEntryFields()$define] Define field comp.iupac.name.syst.
biodb.DEBUG[2023-11-02 08:45:53.757][self$getEntryFields()$define] Define field comp.iupac.name.trad.
biodb.DEBUG[2023-11-02 08:45:53.759][self$getEntryFields()$define] Define field comp.super.class.
biodb.DEBUG[2023-11-02 08:45:53.761][self$getEntryFields()$define] Define field equation.
biodb.DEBUG[2023-11-02 08:45:53.763][self$getEntryFields()$define] Define field formula.
biodb.DEBUG[2023-11-02 08:45:53.765][self$getEntryFields()$define] Define field composition.
biodb.DEBUG[2023-11-02 08:45:53.767][self$getEntryFields()$define] Define field inchi.
biodb.DEBUG[2023-11-02 08:45:53.769][self$getEntryFields()$define] Define field inchikey.
biodb.DEBUG[2023-11-02 08:45:53.771][self$getEntryFields()$define] Define field logp.
biodb.DEBUG[2023-11-02 08:45:53.773][self$getEntryFields()$define] Define field ms.level.
biodb.DEBUG[2023-11-02 08:45:53.775][self$getEntryFields()$define] Define field ms.mode.
biodb.DEBUG[2023-11-02 08:45:53.777][self$getEntryFields()$define] Define field msdev.
biodb.DEBUG[2023-11-02 08:45:53.779][self$getEntryFields()$define] Define field msdevtype.
biodb.DEBUG[2023-11-02 08:45:53.781][self$getEntryFields()$define] Define field msprecannot.
biodb.DEBUG[2023-11-02 08:45:53.783][self$getEntryFields()$define] Define field msprecmz.
biodb.DEBUG[2023-11-02 08:45:53.785][self$getEntryFields()$define] Define field mstype.
biodb.DEBUG[2023-11-02 08:45:53.787][self$getEntryFields()$define] Define field nb.compounds.
biodb.DEBUG[2023-11-02 08:45:53.789][self$getEntryFields()$define] Define field nb.peaks.
biodb.DEBUG[2023-11-02 08:45:53.791][self$getEntryFields()$define] Define field products.
biodb.DEBUG[2023-11-02 08:45:53.793][self$getEntryFields()$define] Define field smiles.
biodb.DEBUG[2023-11-02 08:45:53.795][self$getEntryFields()$define] Define field smiles.canonical.
biodb.DEBUG[2023-11-02 08:45:53.797][self$getEntryFields()$define] Define field smiles.isomeric.
biodb.DEBUG[2023-11-02 08:45:53.799][self$getEntryFields()$define] Define field substrates.
biodb.DEBUG[2023-11-02 08:45:53.808][initialize] Created successfully new BiodbMain instance.
biodb.DEBUG[2023-11-02 08:45:53.810][initialize] This is biodb version 1.10.0.
biodb.DEBUG[2023-11-02 08:45:53.814][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2023-11-02 08:45:53.815][FUN] Trying to call function notifyNewObservers on observer BiodbEntryFields.
biodb.DEBUG[2023-11-02 08:45:53.817][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-11-02 08:45:53.818][FUN] Trying to call function notifyNewObservers on observer BiodbConfig.
biodb.DEBUG[2023-11-02 08:45:53.819][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-11-02 08:45:53.826][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-11-02 08:45:53.827][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2023-11-02 08:45:53.828][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-11-02 08:45:53.830][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2023-11-02 08:45:53.831][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-11-02 08:45:53.832][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-11-02 08:45:53.834][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-11-02 08:45:53.835][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-11-02 08:45:53.836][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2023-11-02 08:45:53.837][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-11-02 08:45:53.839][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2023-11-02 08:45:53.840][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-11-02 08:45:53.841][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-11-02 08:45:53.843][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-11-02 08:45:53.844][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-11-02 08:45:53.845][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2023-11-02 08:45:53.846][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-11-02 08:45:53.848][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2023-11-02 08:45:53.849][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-11-02 08:45:53.850][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-11-02 08:45:53.852][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-11-02 08:45:53.853][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-11-02 08:45:53.854][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2023-11-02 08:45:53.855][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-11-02 08:45:53.857][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2023-11-02 08:45:53.858][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-11-02 08:45:53.859][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-11-02 08:45:53.861][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-11-02 08:45:53.862][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-11-02 08:45:53.863][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2023-11-02 08:45:53.864][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-11-02 08:45:53.866][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2023-11-02 08:45:53.867][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-11-02 08:45:53.868][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-11-02 08:45:53.908][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-11-02 08:45:53.909][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-11-02 08:45:53.910][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2023-11-02 08:45:53.911][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-11-02 08:45:53.913][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2023-11-02 08:45:53.914][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-11-02 08:45:53.915][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-11-02 08:45:53.916][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-11-02 08:45:53.917][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-11-02 08:45:53.918][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2023-11-02 08:45:53.920][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-11-02 08:45:53.921][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2023-11-02 08:45:53.922][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-11-02 08:45:53.923][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-11-02 08:45:53.924][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-11-02 08:45:53.926][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-11-02 08:45:53.927][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2023-11-02 08:45:53.928][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-11-02 08:45:53.929][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2023-11-02 08:45:53.930][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-11-02 08:45:53.932][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-11-02 08:45:53.933][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-11-02 08:45:53.934][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-11-02 08:45:53.935][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2023-11-02 08:45:53.937][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-11-02 08:45:53.938][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2023-11-02 08:45:53.939][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-11-02 08:45:53.940][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-11-02 08:45:53.941][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-11-02 08:45:53.943][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-11-02 08:45:53.944][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2023-11-02 08:45:53.945][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-11-02 08:45:53.946][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2023-11-02 08:45:53.948][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-11-02 08:45:53.949][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-11-02 08:45:53.950][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-11-02 08:45:53.951][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-11-02 08:45:53.952][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2023-11-02 08:45:53.954][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-11-02 08:45:53.955][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2023-11-02 08:45:53.956][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-11-02 08:45:53.957][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-11-02 08:45:53.959][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-11-02 08:45:53.960][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-11-02 08:45:53.961][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2023-11-02 08:45:53.962][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-11-02 08:45:53.963][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2023-11-02 08:45:53.965][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-11-02 08:45:53.966][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-11-02 08:45:53.967][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-11-02 08:45:53.968][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-11-02 08:45:53.969][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2023-11-02 08:45:53.971][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-11-02 08:45:53.972][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2023-11-02 08:45:53.973][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-11-02 08:45:53.974][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-11-02 08:45:53.975][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-11-02 08:45:53.977][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-11-02 08:45:53.978][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2023-11-02 08:45:53.979][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-11-02 08:45:53.980][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2023-11-02 08:45:53.981][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-11-02 08:45:53.983][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-11-02 08:45:53.984][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-11-02 08:45:53.985][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-11-02 08:45:53.986][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2023-11-02 08:45:53.987][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-11-02 08:45:53.989][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2023-11-02 08:45:53.990][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-11-02 08:45:53.991][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-11-02 08:45:53.992][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-11-02 08:45:53.994][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-11-02 08:45:53.995][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2023-11-02 08:45:53.996][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-11-02 08:45:53.997][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2023-11-02 08:45:53.998][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-11-02 08:45:54.000][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-11-02 08:45:54.001][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-11-02 08:45:54.002][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-11-02 08:45:54.003][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2023-11-02 08:45:54.005][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-11-02 08:45:54.006][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2023-11-02 08:45:54.007][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-11-02 08:45:54.008][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-11-02 08:45:54.009][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-11-02 08:45:54.012][biodb$loadDefinitions] Load definitions from file "/home/biocbuild/R/R-4.3.1/site-library/biodbHmdb/definitions.yml".
biodb.DEBUG[2023-11-02 08:45:54.026][self$getDbsInfo()$define] Define connector hmdb.metabolites.
biodb.DEBUG[2023-11-02 08:45:54.029][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2023-11-02 08:45:54.030][self$setPropertyValue] Setting property "description" to "NA".
biodb.DEBUG[2023-11-02 08:45:54.032][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2023-11-02 08:45:54.033][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2023-11-02 08:45:54.035][self$setPropertyValue] Setting property "downloadable" to "TRUE".
biodb.DEBUG[2023-11-02 08:45:54.036][self$setPropertyValue] Setting property "dwnld.ext" to "zip".
biodb.DEBUG[2023-11-02 08:45:54.037][self$setPropertyValue] Setting property "editable" to "FALSE".
biodb.DEBUG[2023-11-02 08:45:54.039][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2023-11-02 08:45:54.040][self$setPropertyValue] Setting property "entry.content.type" to "xml".
biodb.DEBUG[2023-11-02 08:45:54.041][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2023-11-02 08:45:54.043][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2023-11-02 08:45:54.044][self$setPropertyValue] Setting property "name" to "HMDB Metabolites".
biodb.DEBUG[2023-11-02 08:45:54.046][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2023-11-02 08:45:54.047][self$setPropertyValue] Setting property "parsing.expr" to "/metabolite/accession".
biodb.DEBUG[2023-11-02 08:45:54.047][self$setPropertyValue] Setting property "parsing.expr" to "/metabolite/secondary_accessions/accession".
biodb.DEBUG[2023-11-02 08:45:54.047][self$setPropertyValue] Setting property "parsing.expr" to "//average_molecular_weight".
biodb.DEBUG[2023-11-02 08:45:54.047][self$setPropertyValue] Setting property "parsing.expr" to "//cas_registry_number".
biodb.DEBUG[2023-11-02 08:45:54.047][self$setPropertyValue] Setting property "parsing.expr" to "//chebi_id".
biodb.DEBUG[2023-11-02 08:45:54.047][self$setPropertyValue] Setting property "parsing.expr" to "//chemspider_id".
biodb.DEBUG[2023-11-02 08:45:54.047][self$setPropertyValue] Setting property "parsing.expr" to "//kegg_id".
biodb.DEBUG[2023-11-02 08:45:54.047][self$setPropertyValue] Setting property "parsing.expr" to "//pubchem_compound_id".
biodb.DEBUG[2023-11-02 08:45:54.047][self$setPropertyValue] Setting property "parsing.expr" to "//iupac_name".
biodb.DEBUG[2023-11-02 08:45:54.047][self$setPropertyValue] Setting property "parsing.expr" to "//traditional_iupac".
biodb.DEBUG[2023-11-02 08:45:54.047][self$setPropertyValue] Setting property "parsing.expr" to "/metabolite/chemical_formula".
biodb.DEBUG[2023-11-02 08:45:54.047][self$setPropertyValue] Setting property "parsing.expr" to "//inchi".
biodb.DEBUG[2023-11-02 08:45:54.047][self$setPropertyValue] Setting property "parsing.expr" to "//inchikey".
biodb.DEBUG[2023-11-02 08:45:54.047][self$setPropertyValue] Setting property "parsing.expr" to "//monisotopic_molecular_weight".
biodb.DEBUG[2023-11-02 08:45:54.047][self$setPropertyValue] Setting property "parsing.expr" to "/metabolite/name".
biodb.DEBUG[2023-11-02 08:45:54.047][self$setPropertyValue] Setting property "parsing.expr" to "/metabolite/description".
biodb.DEBUG[2023-11-02 08:45:54.047][self$setPropertyValue] Setting property "parsing.expr" to "//smiles".
biodb.DEBUG[2023-11-02 08:45:54.047][self$setPropertyValue] Setting property "parsing.expr" to "//super_class".
biodb.DEBUG[2023-11-02 08:45:54.049][self$setPropertyValue] Setting property "remote" to "TRUE".
biodb.DEBUG[2023-11-02 08:45:54.050][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2023-11-02 08:45:54.050][self$setPropertyValue] Setting property "searchable.fields" to "description".
biodb.DEBUG[2023-11-02 08:45:54.050][self$setPropertyValue] Setting property "searchable.fields" to "secondary.accessions".
biodb.DEBUG[2023-11-02 08:45:54.052][self$setPropertyValue] Setting property "scheduler.n" to "3".
biodb.DEBUG[2023-11-02 08:45:54.053][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2023-11-02 08:45:54.054][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2023-11-02 08:45:54.056][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2023-11-02 08:45:54.057][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2023-11-02 08:45:54.058][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2023-11-02 08:45:54.060][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2023-11-02 08:45:54.061][self$setPropertyValue] Setting property "urls" to "http://www.hmdb.ca/".
biodb.DEBUG[2023-11-02 08:45:54.061][self$setPropertyValue] Setting property "urls" to "http://www.hmdb.ca/system/downloads/current/hmdb_metabolites.zip".
biodb.DEBUG[2023-11-02 08:45:54.063][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2023-11-02 08:45:54.064][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2023-11-02 08:45:54.066][self$setPropertyValue] Setting property "writable" to "FALSE".
biodb.DEBUG[2023-11-02 08:45:54.067][self$setPropertyValue]
biodb.DEBUG[2023-11-02 08:45:54.076][self$getEntryFields()$define] Define field secondary_accessions.
biodb.DEBUG[2023-11-02 08:45:54.078][self$getEntryFields()$define] Define field chemspider.id.
biodb.DEBUG[2023-11-02 08:45:54.081][self$getEntryFields()$define] Define field hmdb.metabolites.id.
biodb.DEBUG[2023-11-02 08:45:54.083][self$getEntryFields()$define] Define field kegg.compound.id.
biodb.DEBUG[2023-11-02 08:45:54.085][self$getEntryFields()$define] Define field ncbi.pubchem.comp.id.
biodb.DEBUG[2023-11-02 08:45:54.116][initialize] Initialize connector hmdb.metabolites.
biodb.DEBUG[2023-11-02 08:45:54.117][initialize] Register connector hmdb.metabolites with the request scheduler
biodb.DEBUG[2023-11-02 08:45:54.123][private$bdb$getRequestScheduler()$re ...] Register connector hmdb.metabolites.
biodb.DEBUG[2023-11-02 08:45:54.128][private$addConnectorRules] Create new rule for URL "www.hmdb.ca" of connector "hmdb.metabolites".
biodb.DEBUG[2023-11-02 08:45:54.133][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2023-11-02 08:45:54.135][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2023-11-02 08:45:54.137][rule$addConnector] Connector "hmdb.metabolites" is already listed in rule "www.hmdb.ca".
biodb.DEBUG[2023-11-02 08:45:54.138][biodb$getFactory()$createConn] Creating new connector hmdb.metabolites for database class hmdb.metabolites .
biodb.DEBUG[2023-11-02 08:45:54.140][self$setPropertyValue] Setting property "urls" to "http://www.hmdb.ca/".
biodb.DEBUG[2023-11-02 08:45:54.140][self$setPropertyValue] Setting property "urls" to "/home/biocbuild/R/R-4.3.1/site-library/biodbHmdb/extdata/generated/hmdb_extract.zip".
biodb.DEBUG[2023-11-02 08:45:54.152][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2023-11-02 08:45:54.153][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2023-11-02 08:45:54.154][FUN] Trying to call function notifyConnUrlsUpdated on observer BiodbRequestScheduler.
biodb.DEBUG[2023-11-02 08:45:54.156][FUN] Functions in observer BiodbRequestScheduler: [15]: ".__enclos_env__, clone, getAllRules, unregisterConnector, registerConnector, getConnectorRules, findRule, getUrl, getUrlString, notifyConnSchedulerFrequencyUpdated, notifyConnUrlsUpdated, downloadFile, sendRequest, sendSoapRequest, initialize".
biodb.DEBUG[2023-11-02 08:45:54.157][self$registerConnector] Register connector hmdb.metabolites.
biodb.DEBUG[2023-11-02 08:45:54.182][private$addConnectorRules] Create new rule for URL "www.hmdb.ca" of connector "hmdb.metabolites".
biodb.DEBUG[2023-11-02 08:45:54.184][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2023-11-02 08:45:54.185][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2023-11-02 08:45:54.187][private$addConnectorRules] Create new rule for URL "/home/biocbuild/R/R-4.3.1/site-library/biodbHmdb/extdata/generated/hmdb_extract.zip" of connector "hmdb.metabolites".
biodb.DEBUG[2023-11-02 08:45:54.189][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2023-11-02 08:45:54.190][self$setFrequency] t=1.000000, n=3.000000
biodb.INFO [2023-11-02 08:45:54.200][biodb::testThat]
biodb.INFO [2023-11-02 08:45:54.202][biodb::testThat] Running test function test.entry.fields (" Entry fields have a correct value ").
biodb.INFO [2023-11-02 08:45:54.203][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2023-11-02 08:45:54.205][biodb::testThat]
biodb.TRACE[2023-11-02 08:45:54.212][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/R/R-4.3.1/site-library/biodbHmdb/testref/entry-hmdb.metabolites-HMDB0000001-content.xml".
biodb.DEBUG[2023-11-02 08:45:54.214][biodb$getFactory()$createEntryFromCo ...] Creating HMDB Metabolites entries from 1 content(s).
biodb.DEBUG[2023-11-02 08:45:54.219][biodb$getFactory()$createEntryFromCo ...] Parsing 1 HMDB Metabolites entries.
biodb.DEBUG[2023-11-02 08:45:54.232][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-11-02 08:45:54.233][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-11-02 08:45:54.235][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-11-02 08:45:54.244][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-11-02 08:45:54.245][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-11-02 08:45:54.247][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-11-02 08:45:54.248][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-11-02 08:45:54.262][ef$get] Asked field names are: accession.
biodb.TRACE[2023-11-02 08:45:54.264][ef$get] Realnames of fields are: accession.
biodb.TRACE[2023-11-02 08:45:54.265][ef$get] 1 fields were returned.
biodb.TRACE[2023-11-02 08:45:54.267][ef$get] fields variable is a list.
biodb.TRACE[2023-11-02 08:45:54.269][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-11-02 08:45:54.287][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-11-02 08:45:54.288][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-11-02 08:45:54.290][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-11-02 08:45:54.291][ef$get] Asked field names are: secondary.accessions.
biodb.TRACE[2023-11-02 08:45:54.293][ef$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2023-11-02 08:45:54.294][ef$get] 1 fields were returned.
biodb.TRACE[2023-11-02 08:45:54.295][ef$get] fields variable is a list.
biodb.TRACE[2023-11-02 08:45:54.333][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2023-11-02 08:45:54.334][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2023-11-02 08:45:54.336][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-11-02 08:45:54.337][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-11-02 08:45:54.338][ef$get] Asked field names are: average.mass.
biodb.TRACE[2023-11-02 08:45:54.340][ef$get] Realnames of fields are: average.mass.
biodb.TRACE[2023-11-02 08:45:54.341][ef$get] 1 fields were returned.
biodb.TRACE[2023-11-02 08:45:54.342][ef$get] fields variable is a list.
biodb.TRACE[2023-11-02 08:45:54.344][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2023-11-02 08:45:54.346][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2023-11-02 08:45:54.347][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-11-02 08:45:54.348][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-11-02 08:45:54.350][ef$get] Asked field names are: cas.id.
biodb.TRACE[2023-11-02 08:45:54.351][ef$get] Realnames of fields are: cas.id.
biodb.TRACE[2023-11-02 08:45:54.353][ef$get] 1 fields were returned.
biodb.TRACE[2023-11-02 08:45:54.354][ef$get] fields variable is a list.
biodb.TRACE[2023-11-02 08:45:54.366][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2023-11-02 08:45:54.368][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2023-11-02 08:45:54.369][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-11-02 08:45:54.371][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-11-02 08:45:54.372][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2023-11-02 08:45:54.373][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-11-02 08:45:54.375][ef$get] 1 fields were returned.
biodb.TRACE[2023-11-02 08:45:54.376][ef$get] fields variable is a list.
biodb.TRACE[2023-11-02 08:45:54.378][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-11-02 08:45:54.380][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-11-02 08:45:54.381][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-11-02 08:45:54.382][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-11-02 08:45:54.384][ef$get] Asked field names are: chemspider.id.
biodb.TRACE[2023-11-02 08:45:54.385][ef$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2023-11-02 08:45:54.386][ef$get] 1 fields were returned.
biodb.TRACE[2023-11-02 08:45:54.388][ef$get] fields variable is a list.
biodb.TRACE[2023-11-02 08:45:54.390][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2023-11-02 08:45:54.391][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2023-11-02 08:45:54.393][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-11-02 08:45:54.394][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-11-02 08:45:54.395][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2023-11-02 08:45:54.397][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2023-11-02 08:45:54.398][ef$get] 1 fields were returned.
biodb.TRACE[2023-11-02 08:45:54.400][ef$get] fields variable is a list.
biodb.TRACE[2023-11-02 08:45:54.402][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2023-11-02 08:45:54.403][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2023-11-02 08:45:54.404][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-11-02 08:45:54.406][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-11-02 08:45:54.407][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-11-02 08:45:54.409][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-11-02 08:45:54.410][ef$get] 1 fields were returned.
biodb.TRACE[2023-11-02 08:45:54.411][ef$get] fields variable is a list.
biodb.TRACE[2023-11-02 08:45:54.414][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-11-02 08:45:54.415][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-11-02 08:45:54.416][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-11-02 08:45:54.418][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-11-02 08:45:54.419][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2023-11-02 08:45:54.421][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2023-11-02 08:45:54.422][ef$get] 1 fields were returned.
biodb.TRACE[2023-11-02 08:45:54.423][ef$get] fields variable is a list.
biodb.TRACE[2023-11-02 08:45:54.426][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2023-11-02 08:45:54.427][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2023-11-02 08:45:54.428][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-11-02 08:45:54.430][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-11-02 08:45:54.431][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2023-11-02 08:45:54.433][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2023-11-02 08:45:54.434][ef$get] 1 fields were returned.
biodb.TRACE[2023-11-02 08:45:54.436][ef$get] fields variable is a list.
biodb.TRACE[2023-11-02 08:45:54.438][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2023-11-02 08:45:54.439][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2023-11-02 08:45:54.441][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-11-02 08:45:54.442][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-11-02 08:45:54.444][ef$get] Asked field names are: formula.
biodb.TRACE[2023-11-02 08:45:54.445][ef$get] Realnames of fields are: formula.
biodb.TRACE[2023-11-02 08:45:54.447][ef$get] 1 fields were returned.
biodb.TRACE[2023-11-02 08:45:54.448][ef$get] fields variable is a list.
biodb.TRACE[2023-11-02 08:45:54.450][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2023-11-02 08:45:54.451][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2023-11-02 08:45:54.453][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-11-02 08:45:54.454][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-11-02 08:45:54.456][ef$get] Asked field names are: inchi.
biodb.TRACE[2023-11-02 08:45:54.457][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2023-11-02 08:45:54.458][ef$get] 1 fields were returned.
biodb.TRACE[2023-11-02 08:45:54.460][ef$get] fields variable is a list.
biodb.TRACE[2023-11-02 08:45:54.462][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2023-11-02 08:45:54.463][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2023-11-02 08:45:54.465][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-11-02 08:45:54.466][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-11-02 08:45:54.468][ef$get] Asked field names are: inchikey.
biodb.TRACE[2023-11-02 08:45:54.469][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-11-02 08:45:54.470][ef$get] 1 fields were returned.
biodb.TRACE[2023-11-02 08:45:54.472][ef$get] fields variable is a list.
biodb.TRACE[2023-11-02 08:45:54.474][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2023-11-02 08:45:54.475][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-11-02 08:45:54.477][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-11-02 08:45:54.478][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-11-02 08:45:54.480][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-11-02 08:45:54.481][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-11-02 08:45:54.482][ef$get] 1 fields were returned.
biodb.TRACE[2023-11-02 08:45:54.484][ef$get] fields variable is a list.
biodb.TRACE[2023-11-02 08:45:54.486][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-11-02 08:45:54.487][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-11-02 08:45:54.489][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-11-02 08:45:54.490][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-11-02 08:45:54.492][ef$get] Asked field names are: name.
biodb.TRACE[2023-11-02 08:45:54.493][ef$get] Realnames of fields are: name.
biodb.TRACE[2023-11-02 08:45:54.494][ef$get] 1 fields were returned.
biodb.TRACE[2023-11-02 08:45:54.496][ef$get] fields variable is a list.
biodb.TRACE[2023-11-02 08:45:54.497][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2023-11-02 08:45:54.499][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2023-11-02 08:45:54.500][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-11-02 08:45:54.502][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-11-02 08:45:54.503][ef$get] Asked field names are: description.
biodb.TRACE[2023-11-02 08:45:54.505][ef$get] Realnames of fields are: description.
biodb.TRACE[2023-11-02 08:45:54.506][ef$get] 1 fields were returned.
biodb.TRACE[2023-11-02 08:45:54.507][ef$get] fields variable is a list.
biodb.TRACE[2023-11-02 08:45:54.509][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2023-11-02 08:45:54.511][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2023-11-02 08:45:54.512][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-11-02 08:45:54.513][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-11-02 08:45:54.515][ef$get] Asked field names are: smiles.
biodb.TRACE[2023-11-02 08:45:54.516][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2023-11-02 08:45:54.518][ef$get] 1 fields were returned.
biodb.TRACE[2023-11-02 08:45:54.519][ef$get] fields variable is a list.
biodb.TRACE[2023-11-02 08:45:54.521][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2023-11-02 08:45:54.523][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2023-11-02 08:45:54.524][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-11-02 08:45:54.525][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-11-02 08:45:54.527][ef$get] Asked field names are: super.class.
biodb.TRACE[2023-11-02 08:45:54.528][ef$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2023-11-02 08:45:54.530][ef$get] 1 fields were returned.
biodb.TRACE[2023-11-02 08:45:54.531][ef$get] fields variable is a list.
biodb.TRACE[2023-11-02 08:45:54.533][self$getBiodb()$getEntryFields()$get] Asked field names are: super.class.
biodb.TRACE[2023-11-02 08:45:54.535][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2023-11-02 08:45:54.536][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-11-02 08:45:54.537][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-11-02 08:45:54.539][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-11-02 08:45:54.541][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-11-02 08:45:54.542][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-11-02 08:45:54.544][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-11-02 08:45:54.545][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-11-02 08:45:54.547][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-11-02 08:45:54.548][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-11-02 08:45:54.549][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-11-02 08:45:54.551][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-11-02 08:45:54.552][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-11-02 08:45:54.554][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-11-02 08:45:54.555][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-11-02 08:45:54.611][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2023-11-02 08:45:54.613][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2023-11-02 08:45:54.614][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-11-02 08:45:54.616][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-11-02 08:45:54.617][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2023-11-02 08:45:54.618][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2023-11-02 08:45:54.620][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-11-02 08:45:54.621][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-11-02 08:45:54.622][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2023-11-02 08:45:54.624][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2023-11-02 08:45:54.625][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-11-02 08:45:54.626][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-11-02 08:45:54.628][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2023-11-02 08:45:54.629][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2023-11-02 08:45:54.631][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-11-02 08:45:54.632][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-11-02 08:45:54.633][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2023-11-02 08:45:54.635][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2023-11-02 08:45:54.636][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-11-02 08:45:54.637][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-11-02 08:45:54.639][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2023-11-02 08:45:54.640][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2023-11-02 08:45:54.642][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-11-02 08:45:54.643][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-11-02 08:45:54.644][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-11-02 08:45:54.646][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-11-02 08:45:54.647][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-11-02 08:45:54.648][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-11-02 08:45:54.650][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-11-02 08:45:54.651][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-11-02 08:45:54.653][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-11-02 08:45:54.654][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-11-02 08:45:54.655][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-11-02 08:45:54.657][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-11-02 08:45:54.658][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-11-02 08:45:54.659][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-11-02 08:45:54.661][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2023-11-02 08:45:54.662][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2023-11-02 08:45:54.664][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-11-02 08:45:54.665][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-11-02 08:45:54.667][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2023-11-02 08:45:54.668][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2023-11-02 08:45:54.669][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-11-02 08:45:54.671][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-11-02 08:45:54.672][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2023-11-02 08:45:54.674][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2023-11-02 08:45:54.675][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-11-02 08:45:54.676][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-11-02 08:45:54.678][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2023-11-02 08:45:54.679][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2023-11-02 08:45:54.680][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-11-02 08:45:54.682][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-11-02 08:45:54.683][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2023-11-02 08:45:54.685][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2023-11-02 08:45:54.686][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-11-02 08:45:54.687][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-11-02 08:45:54.689][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2023-11-02 08:45:54.690][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2023-11-02 08:45:54.692][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-11-02 08:45:54.693][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-11-02 08:45:54.694][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2023-11-02 08:45:54.696][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2023-11-02 08:45:54.697][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-11-02 08:45:54.699][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-11-02 08:45:54.700][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2023-11-02 08:45:54.701][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2023-11-02 08:45:54.703][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-11-02 08:45:54.704][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-11-02 08:45:54.706][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2023-11-02 08:45:54.707][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2023-11-02 08:45:54.708][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-11-02 08:45:54.710][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-11-02 08:45:54.711][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.super.class.
biodb.TRACE[2023-11-02 08:45:54.713][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2023-11-02 08:45:54.714][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-11-02 08:45:54.715][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-11-02 08:45:54.717][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.super.class.
biodb.TRACE[2023-11-02 08:45:54.718][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2023-11-02 08:45:54.720][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-11-02 08:45:54.721][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-11-02 08:45:54.722][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.super.class.
biodb.TRACE[2023-11-02 08:45:54.724][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2023-11-02 08:45:54.725][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-11-02 08:45:54.727][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-11-02 08:45:54.728][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2023-11-02 08:45:54.730][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2023-11-02 08:45:54.731][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-11-02 08:45:54.732][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-11-02 08:45:54.734][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2023-11-02 08:45:54.735][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2023-11-02 08:45:54.737][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-11-02 08:45:54.738][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-11-02 08:45:54.739][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2023-11-02 08:45:54.748][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2023-11-02 08:45:54.750][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-11-02 08:45:54.751][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-11-02 08:45:54.753][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2023-11-02 08:45:54.755][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2023-11-02 08:45:54.756][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-11-02 08:45:54.757][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-11-02 08:45:54.759][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2023-11-02 08:45:54.760][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2023-11-02 08:45:54.762][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-11-02 08:45:54.763][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-11-02 08:45:54.764][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2023-11-02 08:45:54.766][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2023-11-02 08:45:54.767][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-11-02 08:45:54.769][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-11-02 08:45:54.770][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2023-11-02 08:45:54.772][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2023-11-02 08:45:54.773][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-11-02 08:45:54.775][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-11-02 08:45:54.776][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2023-11-02 08:45:54.778][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2023-11-02 08:45:54.779][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-11-02 08:45:54.780][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-11-02 08:45:54.782][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2023-11-02 08:45:54.783][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2023-11-02 08:45:54.785][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-11-02 08:45:54.786][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-11-02 08:45:54.788][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2023-11-02 08:45:54.789][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-11-02 08:45:54.791][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-11-02 08:45:54.792][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-11-02 08:45:54.794][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2023-11-02 08:45:54.795][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-11-02 08:45:54.797][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-11-02 08:45:54.798][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-11-02 08:45:54.799][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2023-11-02 08:45:54.801][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-11-02 08:45:54.802][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-11-02 08:45:54.804][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-11-02 08:45:54.805][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2023-11-02 08:45:54.807][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2023-11-02 08:45:54.808][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-11-02 08:45:54.810][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-11-02 08:45:54.811][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2023-11-02 08:45:54.813][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2023-11-02 08:45:54.814][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-11-02 08:45:54.815][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-11-02 08:45:54.817][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2023-11-02 08:45:54.818][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2023-11-02 08:45:54.820][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-11-02 08:45:54.821][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-11-02 08:45:54.823][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-11-02 08:45:54.825][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-11-02 08:45:54.827][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-11-02 08:45:54.828][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-11-02 08:45:54.829][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-11-02 08:45:54.831][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-11-02 08:45:54.832][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-11-02 08:45:54.833][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-11-02 08:45:54.835][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-11-02 08:45:54.836][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-11-02 08:45:54.838][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-11-02 08:45:54.839][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-11-02 08:45:54.841][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2023-11-02 08:45:54.842][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2023-11-02 08:45:54.844][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-11-02 08:45:54.845][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-11-02 08:45:54.846][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2023-11-02 08:45:54.848][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2023-11-02 08:45:54.849][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-11-02 08:45:54.850][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-11-02 08:45:54.852][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2023-11-02 08:45:54.853][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2023-11-02 08:45:54.855][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-11-02 08:45:54.856][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-11-02 08:45:54.857][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-11-02 08:45:54.859][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-11-02 08:45:54.860][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-11-02 08:45:54.861][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-11-02 08:45:54.863][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-11-02 08:45:54.864][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-11-02 08:45:54.866][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-11-02 08:45:54.867][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-11-02 08:45:54.868][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-11-02 08:45:54.870][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-11-02 08:45:54.871][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-11-02 08:45:54.872][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-11-02 08:45:54.874][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2023-11-02 08:45:54.875][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2023-11-02 08:45:54.877][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-11-02 08:45:54.878][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-11-02 08:45:54.880][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2023-11-02 08:45:54.882][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2023-11-02 08:45:54.883][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-11-02 08:45:54.884][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-11-02 08:45:54.886][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2023-11-02 08:45:54.887][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2023-11-02 08:45:54.889][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-11-02 08:45:54.890][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-11-02 08:45:54.892][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2023-11-02 08:45:54.893][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2023-11-02 08:45:54.894][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-11-02 08:45:54.896][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-11-02 08:45:54.897][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2023-11-02 08:45:54.899][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2023-11-02 08:45:54.900][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-11-02 08:45:54.901][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-11-02 08:45:54.903][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2023-11-02 08:45:54.904][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2023-11-02 08:45:54.905][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-11-02 08:45:54.907][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-11-02 08:45:54.908][self$getBiodb()$getEntryFields()$get] Asked field names are: INCHIKEY.
biodb.TRACE[2023-11-02 08:45:54.910][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-11-02 08:45:54.911][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-11-02 08:45:54.912][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-11-02 08:45:54.914][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2023-11-02 08:45:54.915][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-11-02 08:45:54.916][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-11-02 08:45:54.918][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-11-02 08:45:54.919][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2023-11-02 08:45:54.921][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-11-02 08:45:54.922][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-11-02 08:45:54.923][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-11-02 08:45:54.925][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2023-11-02 08:45:54.926][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-11-02 08:45:54.927][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-11-02 08:45:54.929][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-11-02 08:45:54.930][self$getBiodb()$getEntryFields()$get] Asked field names are: INCHIKEY.
biodb.TRACE[2023-11-02 08:45:54.931][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-11-02 08:45:54.933][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-11-02 08:45:54.934][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-11-02 08:45:54.970][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2023-11-02 08:45:54.972][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2023-11-02 08:45:54.973][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-11-02 08:45:54.974][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-11-02 08:45:54.976][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2023-11-02 08:45:54.977][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2023-11-02 08:45:54.979][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-11-02 08:45:54.980][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-11-02 08:45:54.981][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2023-11-02 08:45:54.983][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2023-11-02 08:45:54.984][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-11-02 08:45:54.986][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-11-02 08:45:54.987][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2023-11-02 08:45:54.989][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2023-11-02 08:45:54.990][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-11-02 08:45:54.991][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-11-02 08:45:54.993][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2023-11-02 08:45:54.994][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2023-11-02 08:45:54.996][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-11-02 08:45:54.997][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-11-02 08:45:54.999][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2023-11-02 08:45:55.000][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2023-11-02 08:45:55.002][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-11-02 08:45:55.003][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-11-02 08:45:55.004][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2023-11-02 08:45:55.006][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2023-11-02 08:45:55.007][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-11-02 08:45:55.008][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-11-02 08:45:55.010][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-11-02 08:45:55.011][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-11-02 08:45:55.013][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-11-02 08:45:55.014][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-11-02 08:45:55.015][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2023-11-02 08:45:55.017][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2023-11-02 08:45:55.018][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-11-02 08:45:55.020][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-11-02 08:45:55.022][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-11-02 08:45:55.023][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-11-02 08:45:55.024][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-11-02 08:45:55.026][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-11-02 08:45:55.027][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-11-02 08:45:55.029][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-11-02 08:45:55.030][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-11-02 08:45:55.031][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-11-02 08:45:55.033][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-11-02 08:45:55.034][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-11-02 08:45:55.036][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-11-02 08:45:55.037][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-11-02 08:45:55.039][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-11-02 08:45:55.040][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-11-02 08:45:55.041][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-11-02 08:45:55.043][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-11-02 08:45:55.044][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-11-02 08:45:55.045][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-11-02 08:45:55.047][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-11-02 08:45:55.048][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-11-02 08:45:55.050][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-11-02 08:45:55.051][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-11-02 08:45:55.052][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-11-02 08:45:55.054][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-11-02 08:45:55.055][biodb$getFactory()$createEntryFromCo ...] Accession numbers: HMDB0000001.
biodb.TRACE[2023-11-02 08:45:55.059][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2023-11-02 08:45:55.061][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2023-11-02 08:45:55.063][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-11-02 08:45:55.065][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-11-02 08:45:55.066][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2023-11-02 08:45:55.068][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2023-11-02 08:45:55.069][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-11-02 08:45:55.070][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-11-02 08:45:55.072][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2023-11-02 08:45:55.073][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2023-11-02 08:45:55.075][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-11-02 08:45:55.076][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-11-02 08:45:55.078][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2023-11-02 08:45:55.079][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2023-11-02 08:45:55.081][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-11-02 08:45:55.082][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-11-02 08:45:55.103][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-11-02 08:45:55.104][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-11-02 08:45:55.106][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-11-02 08:45:55.107][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-11-02 08:45:55.117][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2023-11-02 08:45:55.118][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2023-11-02 08:45:55.120][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-11-02 08:45:55.121][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-11-02 08:45:55.130][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-11-02 08:45:55.132][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-11-02 08:45:55.133][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-11-02 08:45:55.144][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-11-02 08:45:55.146][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-11-02 08:45:55.147][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-11-02 08:45:55.149][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-11-02 08:45:55.150][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-11-02 08:45:55.151][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-11-02 08:45:55.153][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-11-02 08:45:55.154][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-11-02 08:45:55.156][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-11-02 08:45:55.159][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-11-02 08:45:55.161][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-11-02 08:45:55.162][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-11-02 08:45:55.164][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-11-02 08:45:55.165][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-11-02 08:45:55.167][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-11-02 08:45:55.168][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-11-02 08:45:55.170][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-11-02 08:45:55.171][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-11-02 08:45:55.173][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-11-02 08:45:55.174][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-11-02 08:45:55.175][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-11-02 08:45:55.177][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2023-11-02 08:45:55.179][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2023-11-02 08:45:55.180][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-11-02 08:45:55.182][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-11-02 08:45:55.183][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2023-11-02 08:45:55.185][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2023-11-02 08:45:55.186][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-11-02 08:45:55.187][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-11-02 08:45:55.189][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2023-11-02 08:45:55.190][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2023-11-02 08:45:55.192][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-11-02 08:45:55.193][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-11-02 08:45:55.207][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-11-02 08:45:55.209][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-11-02 08:45:55.210][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-11-02 08:45:55.211][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-11-02 08:45:55.213][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-11-02 08:45:55.214][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-11-02 08:45:55.216][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-11-02 08:45:55.217][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-11-02 08:45:55.218][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-11-02 08:45:55.220][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-11-02 08:45:55.221][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-11-02 08:45:55.222][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-11-02 08:45:55.224][ef$get] Asked field names are: accession.
biodb.TRACE[2023-11-02 08:45:55.225][ef$get] Realnames of fields are: accession.
biodb.TRACE[2023-11-02 08:45:55.227][ef$get] 1 fields were returned.
biodb.TRACE[2023-11-02 08:45:55.228][ef$get] fields variable is a list.
biodb.TRACE[2023-11-02 08:45:55.229][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-11-02 08:45:55.231][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-11-02 08:45:55.232][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-11-02 08:45:55.234][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-11-02 08:45:55.249][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2023-11-02 08:45:55.251][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2023-11-02 08:45:55.252][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-11-02 08:45:55.253][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-11-02 08:45:55.255][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2023-11-02 08:45:55.256][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2023-11-02 08:45:55.257][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-11-02 08:45:55.259][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-11-02 08:45:55.260][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2023-11-02 08:45:55.262][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2023-11-02 08:45:55.263][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-11-02 08:45:55.264][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-11-02 08:45:55.266][ef$get] Asked field names are: secondary.accessions.
biodb.TRACE[2023-11-02 08:45:55.267][ef$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2023-11-02 08:45:55.269][ef$get] 1 fields were returned.
biodb.TRACE[2023-11-02 08:45:55.270][ef$get] fields variable is a list.
biodb.TRACE[2023-11-02 08:45:55.272][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2023-11-02 08:45:55.273][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2023-11-02 08:45:55.274][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-11-02 08:45:55.276][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-11-02 08:45:55.290][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2023-11-02 08:45:55.292][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2023-11-02 08:45:55.294][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-11-02 08:45:55.295][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-11-02 08:45:55.296][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2023-11-02 08:45:55.298][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2023-11-02 08:45:55.299][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-11-02 08:45:55.301][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-11-02 08:45:55.302][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2023-11-02 08:45:55.304][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2023-11-02 08:45:55.305][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-11-02 08:45:55.306][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-11-02 08:45:55.308][ef$get] Asked field names are: chemspider.id.
biodb.TRACE[2023-11-02 08:45:55.309][ef$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2023-11-02 08:45:55.311][ef$get] 1 fields were returned.
biodb.TRACE[2023-11-02 08:45:55.312][ef$get] fields variable is a list.
biodb.TRACE[2023-11-02 08:45:55.313][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2023-11-02 08:45:55.315][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2023-11-02 08:45:55.316][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-11-02 08:45:55.317][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-11-02 08:45:55.332][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-11-02 08:45:55.342][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-11-02 08:45:55.343][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-11-02 08:45:55.345][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-11-02 08:45:55.346][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-11-02 08:45:55.348][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-11-02 08:45:55.349][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-11-02 08:45:55.350][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-11-02 08:45:55.351][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-11-02 08:45:55.353][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-11-02 08:45:55.354][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-11-02 08:45:55.355][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-11-02 08:45:55.357][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-11-02 08:45:55.358][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-11-02 08:45:55.360][ef$get] 1 fields were returned.
biodb.TRACE[2023-11-02 08:45:55.361][ef$get] fields variable is a list.
biodb.TRACE[2023-11-02 08:45:55.362][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-11-02 08:45:55.364][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-11-02 08:45:55.365][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-11-02 08:45:55.366][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-11-02 08:45:55.381][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-11-02 08:45:55.383][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-11-02 08:45:55.384][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-11-02 08:45:55.385][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-11-02 08:45:55.387][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-11-02 08:45:55.388][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-11-02 08:45:55.390][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-11-02 08:45:55.391][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-11-02 08:45:55.392][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-11-02 08:45:55.394][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-11-02 08:45:55.395][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-11-02 08:45:55.396][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-11-02 08:45:55.398][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2023-11-02 08:45:55.399][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-11-02 08:45:55.401][ef$get] 1 fields were returned.
biodb.TRACE[2023-11-02 08:45:55.402][ef$get] fields variable is a list.
biodb.TRACE[2023-11-02 08:45:55.403][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-11-02 08:45:55.405][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-11-02 08:45:55.406][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-11-02 08:45:55.407][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-11-02 08:45:55.422][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2023-11-02 08:45:55.424][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2023-11-02 08:45:55.425][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-11-02 08:45:55.426][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-11-02 08:45:55.428][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2023-11-02 08:45:55.429][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2023-11-02 08:45:55.431][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-11-02 08:45:55.432][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-11-02 08:45:55.433][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2023-11-02 08:45:55.435][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2023-11-02 08:45:55.436][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-11-02 08:45:55.437][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-11-02 08:45:55.439][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2023-11-02 08:45:55.440][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2023-11-02 08:45:55.442][ef$get] 1 fields were returned.
biodb.TRACE[2023-11-02 08:45:55.443][ef$get] fields variable is a list.
biodb.TRACE[2023-11-02 08:45:55.444][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2023-11-02 08:45:55.446][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2023-11-02 08:45:55.447][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-11-02 08:45:55.448][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-11-02 08:45:55.463][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2023-11-02 08:45:55.464][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2023-11-02 08:45:55.466][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-11-02 08:45:55.467][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-11-02 08:45:55.468][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2023-11-02 08:45:55.470][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2023-11-02 08:45:55.471][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-11-02 08:45:55.472][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-11-02 08:45:55.474][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2023-11-02 08:45:55.475][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2023-11-02 08:45:55.476][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-11-02 08:45:55.478][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-11-02 08:45:55.479][ef$get] Asked field names are: name.
biodb.TRACE[2023-11-02 08:45:55.481][ef$get] Realnames of fields are: name.
biodb.TRACE[2023-11-02 08:45:55.482][ef$get] 1 fields were returned.
biodb.TRACE[2023-11-02 08:45:55.483][ef$get] fields variable is a list.
biodb.TRACE[2023-11-02 08:45:55.485][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2023-11-02 08:45:55.486][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2023-11-02 08:45:55.487][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-11-02 08:45:55.489][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-11-02 08:45:55.503][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2023-11-02 08:45:55.505][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2023-11-02 08:45:55.506][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-11-02 08:45:55.507][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-11-02 08:45:55.509][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2023-11-02 08:45:55.510][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2023-11-02 08:45:55.511][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-11-02 08:45:55.513][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-11-02 08:45:55.514][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2023-11-02 08:45:55.515][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2023-11-02 08:45:55.517][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-11-02 08:45:55.518][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-11-02 08:45:55.519][ef$get] Asked field names are: description.
biodb.TRACE[2023-11-02 08:45:55.521][ef$get] Realnames of fields are: description.
biodb.TRACE[2023-11-02 08:45:55.531][ef$get] 1 fields were returned.
biodb.TRACE[2023-11-02 08:45:55.532][ef$get] fields variable is a list.
biodb.TRACE[2023-11-02 08:45:55.533][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2023-11-02 08:45:55.535][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2023-11-02 08:45:55.536][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-11-02 08:45:55.538][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-11-02 08:45:55.552][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2023-11-02 08:45:55.554][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2023-11-02 08:45:55.555][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-11-02 08:45:55.556][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-11-02 08:45:55.558][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2023-11-02 08:45:55.559][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2023-11-02 08:45:55.561][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-11-02 08:45:55.562][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-11-02 08:45:55.563][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2023-11-02 08:45:55.565][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2023-11-02 08:45:55.566][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-11-02 08:45:55.567][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-11-02 08:45:55.569][ef$get] Asked field names are: formula.
biodb.TRACE[2023-11-02 08:45:55.570][ef$get] Realnames of fields are: formula.
biodb.TRACE[2023-11-02 08:45:55.572][ef$get] 1 fields were returned.
biodb.TRACE[2023-11-02 08:45:55.573][ef$get] fields variable is a list.
biodb.TRACE[2023-11-02 08:45:55.574][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2023-11-02 08:45:55.576][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2023-11-02 08:45:55.577][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-11-02 08:45:55.578][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-11-02 08:45:55.593][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2023-11-02 08:45:55.595][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2023-11-02 08:45:55.596][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-11-02 08:45:55.597][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-11-02 08:45:55.599][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2023-11-02 08:45:55.600][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2023-11-02 08:45:55.602][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-11-02 08:45:55.603][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-11-02 08:45:55.604][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2023-11-02 08:45:55.606][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2023-11-02 08:45:55.607][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-11-02 08:45:55.608][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-11-02 08:45:55.610][ef$get] Asked field names are: average.mass.
biodb.TRACE[2023-11-02 08:45:55.611][ef$get] Realnames of fields are: average.mass.
biodb.TRACE[2023-11-02 08:45:55.613][ef$get] 1 fields were returned.
biodb.TRACE[2023-11-02 08:45:55.614][ef$get] fields variable is a list.
biodb.TRACE[2023-11-02 08:45:55.615][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2023-11-02 08:45:55.617][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2023-11-02 08:45:55.618][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-11-02 08:45:55.620][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-11-02 08:45:55.635][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-11-02 08:45:55.636][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-11-02 08:45:55.638][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-11-02 08:45:55.639][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-11-02 08:45:55.640][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-11-02 08:45:55.642][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-11-02 08:45:55.643][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-11-02 08:45:55.645][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-11-02 08:45:55.646][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-11-02 08:45:55.648][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-11-02 08:45:55.649][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-11-02 08:45:55.650][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-11-02 08:45:55.652][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-11-02 08:45:55.653][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-11-02 08:45:55.654][ef$get] 1 fields were returned.
biodb.TRACE[2023-11-02 08:45:55.656][ef$get] fields variable is a list.
biodb.TRACE[2023-11-02 08:45:55.657][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-11-02 08:45:55.659][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-11-02 08:45:55.660][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-11-02 08:45:55.661][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-11-02 08:45:55.676][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.super.class.
biodb.TRACE[2023-11-02 08:45:55.678][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2023-11-02 08:45:55.679][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-11-02 08:45:55.680][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-11-02 08:45:55.682][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.super.class.
biodb.TRACE[2023-11-02 08:45:55.683][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2023-11-02 08:45:55.685][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-11-02 08:45:55.686][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-11-02 08:45:55.688][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.super.class.
biodb.TRACE[2023-11-02 08:45:55.689][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2023-11-02 08:45:55.690][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-11-02 08:45:55.692][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-11-02 08:45:55.693][ef$get] Asked field names are: comp.super.class.
biodb.TRACE[2023-11-02 08:45:55.695][ef$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2023-11-02 08:45:55.696][ef$get] 1 fields were returned.
biodb.TRACE[2023-11-02 08:45:55.697][ef$get] fields variable is a list.
biodb.TRACE[2023-11-02 08:45:55.699][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.super.class.
biodb.TRACE[2023-11-02 08:45:55.700][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2023-11-02 08:45:55.702][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-11-02 08:45:55.703][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-11-02 08:45:55.726][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2023-11-02 08:45:55.728][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2023-11-02 08:45:55.729][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-11-02 08:45:55.731][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-11-02 08:45:55.732][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2023-11-02 08:45:55.734][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2023-11-02 08:45:55.735][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-11-02 08:45:55.736][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-11-02 08:45:55.738][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2023-11-02 08:45:55.739][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2023-11-02 08:45:55.741][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-11-02 08:45:55.742][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-11-02 08:45:55.744][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2023-11-02 08:45:55.745][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2023-11-02 08:45:55.746][ef$get] 1 fields were returned.
biodb.TRACE[2023-11-02 08:45:55.748][ef$get] fields variable is a list.
biodb.TRACE[2023-11-02 08:45:55.749][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2023-11-02 08:45:55.751][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2023-11-02 08:45:55.752][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-11-02 08:45:55.753][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-11-02 08:45:55.768][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2023-11-02 08:45:55.770][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2023-11-02 08:45:55.771][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-11-02 08:45:55.773][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-11-02 08:45:55.774][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2023-11-02 08:45:55.776][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2023-11-02 08:45:55.777][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-11-02 08:45:55.779][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-11-02 08:45:55.780][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2023-11-02 08:45:55.781][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2023-11-02 08:45:55.783][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-11-02 08:45:55.784][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-11-02 08:45:55.786][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2023-11-02 08:45:55.787][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2023-11-02 08:45:55.788][ef$get] 1 fields were returned.
biodb.TRACE[2023-11-02 08:45:55.790][ef$get] fields variable is a list.
biodb.TRACE[2023-11-02 08:45:55.791][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2023-11-02 08:45:55.793][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2023-11-02 08:45:55.794][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-11-02 08:45:55.795][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-11-02 08:45:55.810][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2023-11-02 08:45:55.812][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2023-11-02 08:45:55.814][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-11-02 08:45:55.815][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-11-02 08:45:55.816][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2023-11-02 08:45:55.818][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2023-11-02 08:45:55.819][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-11-02 08:45:55.820][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-11-02 08:45:55.822][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2023-11-02 08:45:55.823][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2023-11-02 08:45:55.825][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-11-02 08:45:55.826][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-11-02 08:45:55.827][ef$get] Asked field names are: smiles.
biodb.TRACE[2023-11-02 08:45:55.829][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2023-11-02 08:45:55.830][ef$get] 1 fields were returned.
biodb.TRACE[2023-11-02 08:45:55.831][ef$get] fields variable is a list.
biodb.TRACE[2023-11-02 08:45:55.833][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2023-11-02 08:45:55.834][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2023-11-02 08:45:55.836][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-11-02 08:45:55.837][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-11-02 08:45:55.851][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2023-11-02 08:45:55.853][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2023-11-02 08:45:55.854][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-11-02 08:45:55.856][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-11-02 08:45:55.857][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2023-11-02 08:45:55.859][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2023-11-02 08:45:55.860][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-11-02 08:45:55.861][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-11-02 08:45:55.863][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2023-11-02 08:45:55.864][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2023-11-02 08:45:55.865][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-11-02 08:45:55.867][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-11-02 08:45:55.868][ef$get] Asked field names are: inchi.
biodb.TRACE[2023-11-02 08:45:55.870][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2023-11-02 08:45:55.871][ef$get] 1 fields were returned.
biodb.TRACE[2023-11-02 08:45:55.873][ef$get] fields variable is a list.
biodb.TRACE[2023-11-02 08:45:55.874][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2023-11-02 08:45:55.876][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2023-11-02 08:45:55.877][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-11-02 08:45:55.878][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-11-02 08:45:55.893][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2023-11-02 08:45:55.894][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-11-02 08:45:55.896][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-11-02 08:45:55.897][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-11-02 08:45:55.899][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2023-11-02 08:45:55.900][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-11-02 08:45:55.901][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-11-02 08:45:55.903][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-11-02 08:45:55.904][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2023-11-02 08:45:55.905][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-11-02 08:45:55.915][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-11-02 08:45:55.916][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-11-02 08:45:55.918][ef$get] Asked field names are: inchikey.
biodb.TRACE[2023-11-02 08:45:55.919][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-11-02 08:45:55.921][ef$get] 1 fields were returned.
biodb.TRACE[2023-11-02 08:45:55.922][ef$get] fields variable is a list.
biodb.TRACE[2023-11-02 08:45:55.924][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2023-11-02 08:45:55.925][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-11-02 08:45:55.926][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-11-02 08:45:55.928][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-11-02 08:45:55.943][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2023-11-02 08:45:55.944][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2023-11-02 08:45:55.946][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-11-02 08:45:55.947][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-11-02 08:45:55.949][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2023-11-02 08:45:55.950][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2023-11-02 08:45:55.951][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-11-02 08:45:55.953][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-11-02 08:45:55.954][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2023-11-02 08:45:55.956][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2023-11-02 08:45:55.957][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-11-02 08:45:55.958][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-11-02 08:45:55.960][ef$get] Asked field names are: cas.id.
biodb.TRACE[2023-11-02 08:45:55.961][ef$get] Realnames of fields are: cas.id.
biodb.TRACE[2023-11-02 08:45:55.963][ef$get] 1 fields were returned.
biodb.TRACE[2023-11-02 08:45:55.964][ef$get] fields variable is a list.
biodb.TRACE[2023-11-02 08:45:55.966][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2023-11-02 08:45:55.967][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2023-11-02 08:45:55.968][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-11-02 08:45:55.970][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-11-02 08:45:55.984][ef$get] Asked field names are: accession.
biodb.TRACE[2023-11-02 08:45:55.986][ef$get] Realnames of fields are: accession.
biodb.TRACE[2023-11-02 08:45:55.987][ef$get] 1 fields were returned.
biodb.TRACE[2023-11-02 08:45:55.989][ef$get] fields variable is a list.
biodb.TRACE[2023-11-02 08:45:55.998][ef$get] Asked field names are: average.mass.
biodb.TRACE[2023-11-02 08:45:55.999][ef$get] Realnames of fields are: average.mass.
biodb.TRACE[2023-11-02 08:45:56.001][ef$get] 1 fields were returned.
biodb.TRACE[2023-11-02 08:45:56.002][ef$get] fields variable is a list.
biodb.TRACE[2023-11-02 08:45:56.011][ef$get] Asked field names are: cas.id.
biodb.TRACE[2023-11-02 08:45:56.013][ef$get] Realnames of fields are: cas.id.
biodb.TRACE[2023-11-02 08:45:56.014][ef$get] 1 fields were returned.
biodb.TRACE[2023-11-02 08:45:56.016][ef$get] fields variable is a list.
biodb.TRACE[2023-11-02 08:45:56.025][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2023-11-02 08:45:56.026][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-11-02 08:45:56.028][ef$get] 1 fields were returned.
biodb.TRACE[2023-11-02 08:45:56.029][ef$get] fields variable is a list.
biodb.TRACE[2023-11-02 08:45:56.038][ef$get] Asked field names are: chemspider.id.
biodb.TRACE[2023-11-02 08:45:56.039][ef$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2023-11-02 08:45:56.041][ef$get] 1 fields were returned.
biodb.TRACE[2023-11-02 08:45:56.042][ef$get] fields variable is a list.
biodb.TRACE[2023-11-02 08:45:56.051][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2023-11-02 08:45:56.053][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2023-11-02 08:45:56.054][ef$get] 1 fields were returned.
biodb.TRACE[2023-11-02 08:45:56.056][ef$get] fields variable is a list.
biodb.TRACE[2023-11-02 08:45:56.065][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2023-11-02 08:45:56.066][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2023-11-02 08:45:56.068][ef$get] 1 fields were returned.
biodb.TRACE[2023-11-02 08:45:56.069][ef$get] fields variable is a list.
biodb.TRACE[2023-11-02 08:45:56.078][ef$get] Asked field names are: comp.super.class.
biodb.TRACE[2023-11-02 08:45:56.080][ef$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2023-11-02 08:45:56.081][ef$get] 1 fields were returned.
biodb.TRACE[2023-11-02 08:45:56.083][ef$get] fields variable is a list.
biodb.TRACE[2023-11-02 08:45:56.091][ef$get] Asked field names are: description.
biodb.TRACE[2023-11-02 08:45:56.093][ef$get] Realnames of fields are: description.
biodb.TRACE[2023-11-02 08:45:56.094][ef$get] 1 fields were returned.
biodb.TRACE[2023-11-02 08:45:56.096][ef$get] fields variable is a list.
biodb.TRACE[2023-11-02 08:45:56.113][ef$get] Asked field names are: formula.
biodb.TRACE[2023-11-02 08:45:56.114][ef$get] Realnames of fields are: formula.
biodb.TRACE[2023-11-02 08:45:56.116][ef$get] 1 fields were returned.
biodb.TRACE[2023-11-02 08:45:56.117][ef$get] fields variable is a list.
biodb.TRACE[2023-11-02 08:45:56.126][ef$get] Asked field names are: inchi.
biodb.TRACE[2023-11-02 08:45:56.128][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2023-11-02 08:45:56.129][ef$get] 1 fields were returned.
biodb.TRACE[2023-11-02 08:45:56.130][ef$get] fields variable is a list.
biodb.TRACE[2023-11-02 08:45:56.139][ef$get] Asked field names are: inchikey.
biodb.TRACE[2023-11-02 08:45:56.141][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-11-02 08:45:56.142][ef$get] 1 fields were returned.
biodb.TRACE[2023-11-02 08:45:56.144][ef$get] fields variable is a list.
biodb.TRACE[2023-11-02 08:45:56.153][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2023-11-02 08:45:56.154][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2023-11-02 08:45:56.156][ef$get] 1 fields were returned.
biodb.TRACE[2023-11-02 08:45:56.157][ef$get] fields variable is a list.
biodb.TRACE[2023-11-02 08:45:56.166][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-11-02 08:45:56.168][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-11-02 08:45:56.169][ef$get] 1 fields were returned.
biodb.TRACE[2023-11-02 08:45:56.171][ef$get] fields variable is a list.
biodb.TRACE[2023-11-02 08:45:56.179][ef$get] Asked field names are: name.
biodb.TRACE[2023-11-02 08:45:56.181][ef$get] Realnames of fields are: name.
biodb.TRACE[2023-11-02 08:45:56.183][ef$get] 1 fields were returned.
biodb.TRACE[2023-11-02 08:45:56.184][ef$get] fields variable is a list.
biodb.TRACE[2023-11-02 08:45:56.193][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-11-02 08:45:56.195][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-11-02 08:45:56.196][ef$get] 1 fields were returned.
biodb.TRACE[2023-11-02 08:45:56.198][ef$get] fields variable is a list.
biodb.TRACE[2023-11-02 08:45:56.207][ef$get] Asked field names are: secondary.accessions.
biodb.TRACE[2023-11-02 08:45:56.208][ef$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2023-11-02 08:45:56.210][ef$get] 1 fields were returned.
biodb.TRACE[2023-11-02 08:45:56.211][ef$get] fields variable is a list.
biodb.TRACE[2023-11-02 08:45:56.220][ef$get] Asked field names are: smiles.
biodb.TRACE[2023-11-02 08:45:56.222][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2023-11-02 08:45:56.223][ef$get] 1 fields were returned.
biodb.TRACE[2023-11-02 08:45:56.224][ef$get] fields variable is a list.
biodb.INFO [2023-11-02 08:45:56.239][biodb::testThat]
biodb.INFO [2023-11-02 08:45:56.240][biodb::testThat] Running test function test.rt.unit (" RT unit is defined when there is an RT value. ").
biodb.INFO [2023-11-02 08:45:56.241][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2023-11-02 08:45:56.243][biodb::testThat]
biodb.DEBUG[2023-11-02 08:45:56.264][private$loadEntries] Creating entries from ids [1]: "HMDB0000001".
biodb.DEBUG[2023-11-02 08:45:56.274][conn$getEntryContent] Get HMDB Metabolites entry content(s) for 1 id(s)...
biodb.INFO [2023-11-02 08:45:56.280][self$getFolderPath] Create cache folder "/home/biocbuild/.cache/R/biodb/hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34" for "hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34".
biodb.DEBUG[2023-11-02 08:45:56.282][self$isDownloaded] Database hmdb.metabolites has not yet been downloaded.
biodb.INFO [2023-11-02 08:45:56.283][self$download] Downloading whole database of hmdb.metabolites.
biodb.INFO [2023-11-02 08:45:56.285][private$doDownload] Downloading HMDB metabolite database at "/home/biocbuild/R/R-4.3.1/site-library/biodbHmdb/extdata/generated/hmdb_extract.zip" ...
biodb.TRACE[2023-11-02 08:45:56.287][cch$addFilesToCache] Moving files to cache [1]: "/home/biocbuild/R/R-4.3.1/site-library/biodbHmdb/extdata/generated/hmdb_extract.zip".
biodb.TRACE[2023-11-02 08:45:56.289][private$doAddFilesToCache] Destination files are [1]: "/home/biocbuild/.cache/R/biodb/hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34/download.zip".
biodb.DEBUG[2023-11-02 08:45:56.292][cch$addFilesToCache] Done adding files.
biodb.DEBUG[2023-11-02 08:45:56.294][self$getDownloadPath] Download path of hmdb.metabolites is "/home/biocbuild/.cache/R/biodb/hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34/download.zip".
biodb.DEBUG[2023-11-02 08:45:56.295][self$download] Downloading of hmdb.metabolites completed.
biodb.TRACE[2023-11-02 08:45:56.298][self$addFilesToCache] Moving files to cache [1]: "/home/biocbuild/.cache/R/biodb/tmp/marker6573e62268845marker".
biodb.TRACE[2023-11-02 08:45:56.300][private$doAddFilesToCache] Destination files are [1]: "/home/biocbuild/.cache/R/biodb/hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34/downloaded.marker".
biodb.DEBUG[2023-11-02 08:45:56.311][self$addFilesToCache] Done adding files.
biodb.DEBUG[2023-11-02 08:45:56.314][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.INFO [2023-11-02 08:45:56.316][self$download] Extract whole database of hmdb.metabolites.
biodb.INFO [2023-11-02 08:45:56.317][private$doExtractDownload] Extracting content of downloaded',
' HMDB metabolite database...
biodb.DEBUG[2023-11-02 08:45:56.319][self$getDownloadPath] Download path of hmdb.metabolites is "/home/biocbuild/.cache/R/biodb/hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34/download.zip".
biodb.DEBUG[2023-11-02 08:45:56.320][private$doExtractDownload] Unzipping /home/biocbuild/.cache/R/biodb/hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34/download.zip into /home/biocbuild/.cache/R/biodb/tmp...
biodb.DEBUG[2023-11-02 08:45:56.337][private$findXmlDatabaseFile] Found files [1]: "hmdb_two_full_entries.xml" into /home/biocbuild/.cache/R/biodb/hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34/download.zip.
biodb.DEBUG[2023-11-02 08:45:56.339][private$findXmlDatabaseFile] Found XML file /home/biocbuild/.cache/R/biodb/tmp/hmdb_two_full_entries.xml in ZIP file.
biodb.DEBUG[2023-11-02 08:45:56.340][private$doExtractDownload] Delete existing entry files in cache system.
biodb.DEBUG[2023-11-02 08:45:56.342][private$doExtractDownload] Extract entries from XML file "/home/biocbuild/.cache/R/biodb/tmp/hmdb_two_full_entries.xml", into "/home/biocbuild/.cache/R/biodb/tmp".
biodb.TRACE[2023-11-02 08:45:56.352][self$addFilesToCache] Moving files to cache [2]: "/home/biocbuild/.cache/R/biodb/tmp/HMDB0000001.xml, /home/biocbuild/.cache/R/biodb/tmp/HMDB0000002.xml".
biodb.TRACE[2023-11-02 08:45:56.354][private$doAddFilesToCache] Destination files are [2]: "/home/biocbuild/.cache/R/biodb/hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34/HMDB0000001.xml, /home/biocbuild/.cache/R/biodb/hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34/HMDB0000002.xml".
biodb.DEBUG[2023-11-02 08:45:56.356][self$addFilesToCache] Done adding files.
biodb.DEBUG[2023-11-02 08:45:56.357][private$doExtractDownload] Delete extracted database.
biodb.TRACE[2023-11-02 08:45:56.360][self$addFilesToCache] Moving files to cache [1]: "/home/biocbuild/.cache/R/biodb/tmp/marker6573e5f2d7f9cmarker".
biodb.TRACE[2023-11-02 08:45:56.361][private$doAddFilesToCache] Destination files are [1]: "/home/biocbuild/.cache/R/biodb/hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34/extracted.marker".
biodb.DEBUG[2023-11-02 08:45:56.363][self$addFilesToCache] Done adding files.
biodb.TRACE[2023-11-02 08:45:56.365][cch$loadFileContent] Trying to load 1 files from cache: [1]: "HMDB0000001".
biodb.TRACE[2023-11-02 08:45:56.366][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2023-11-02 08:45:56.369][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/.cache/R/biodb/hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34/HMDB0000001.xml".
biodb.DEBUG[2023-11-02 08:45:56.371][conn$getEntryContent] 1 HMDB Metabolites entry content(s) loaded from cache.
biodb.DEBUG[2023-11-02 08:45:56.406][self$createEntryFromContent] Creating HMDB Metabolites entries from 1 content(s).
biodb.DEBUG[2023-11-02 08:45:56.408][self$createEntryFromContent] Parsing 1 HMDB Metabolites entries.
biodb.DEBUG[2023-11-02 08:45:56.410][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-11-02 08:45:56.411][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-11-02 08:45:56.413][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-11-02 08:45:56.428][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-11-02 08:45:56.430][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-11-02 08:45:56.432][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-11-02 08:45:56.433][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-11-02 08:45:56.441][ef$get] Asked field names are: accession.
biodb.TRACE[2023-11-02 08:45:56.443][ef$get] Realnames of fields are: accession.
biodb.TRACE[2023-11-02 08:45:56.444][ef$get] 1 fields were returned.
biodb.TRACE[2023-11-02 08:45:56.445][ef$get] fields variable is a list.
biodb.TRACE[2023-11-02 08:45:56.447][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-11-02 08:45:56.449][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-11-02 08:45:56.450][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-11-02 08:45:56.452][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-11-02 08:45:56.454][ef$get] Asked field names are: secondary.accessions.
biodb.TRACE[2023-11-02 08:45:56.455][ef$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2023-11-02 08:45:56.457][ef$get] 1 fields were returned.
biodb.TRACE[2023-11-02 08:45:56.458][ef$get] fields variable is a list.
biodb.TRACE[2023-11-02 08:45:56.460][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2023-11-02 08:45:56.462][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2023-11-02 08:45:56.463][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-11-02 08:45:56.464][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-11-02 08:45:56.466][ef$get] Asked field names are: average.mass.
biodb.TRACE[2023-11-02 08:45:56.468][ef$get] Realnames of fields are: average.mass.
biodb.TRACE[2023-11-02 08:45:56.469][ef$get] 1 fields were returned.
biodb.TRACE[2023-11-02 08:45:56.470][ef$get] fields variable is a list.
biodb.TRACE[2023-11-02 08:45:56.473][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2023-11-02 08:45:56.474][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2023-11-02 08:45:56.476][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-11-02 08:45:56.477][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-11-02 08:45:56.479][ef$get] Asked field names are: cas.id.
biodb.TRACE[2023-11-02 08:45:56.480][ef$get] Realnames of fields are: cas.id.
biodb.TRACE[2023-11-02 08:45:56.482][ef$get] 1 fields were returned.
biodb.TRACE[2023-11-02 08:45:56.483][ef$get] fields variable is a list.
biodb.TRACE[2023-11-02 08:45:56.485][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2023-11-02 08:45:56.487][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2023-11-02 08:45:56.488][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-11-02 08:45:56.490][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-11-02 08:45:56.491][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2023-11-02 08:45:56.493][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-11-02 08:45:56.495][ef$get] 1 fields were returned.
biodb.TRACE[2023-11-02 08:45:56.496][ef$get] fields variable is a list.
biodb.TRACE[2023-11-02 08:45:56.498][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-11-02 08:45:56.500][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-11-02 08:45:56.501][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-11-02 08:45:56.503][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-11-02 08:45:56.507][ef$get] Asked field names are: chemspider.id.
biodb.TRACE[2023-11-02 08:45:56.509][ef$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2023-11-02 08:45:56.510][ef$get] 1 fields were returned.
biodb.TRACE[2023-11-02 08:45:56.511][ef$get] fields variable is a list.
biodb.TRACE[2023-11-02 08:45:56.514][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2023-11-02 08:45:56.515][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2023-11-02 08:45:56.517][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-11-02 08:45:56.518][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-11-02 08:45:56.520][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2023-11-02 08:45:56.521][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2023-11-02 08:45:56.523][ef$get] 1 fields were returned.
biodb.TRACE[2023-11-02 08:45:56.524][ef$get] fields variable is a list.
biodb.TRACE[2023-11-02 08:45:56.541][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2023-11-02 08:45:56.543][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2023-11-02 08:45:56.545][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-11-02 08:45:56.546][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-11-02 08:45:56.548][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-11-02 08:45:56.550][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-11-02 08:45:56.551][ef$get] 1 fields were returned.
biodb.TRACE[2023-11-02 08:45:56.552][ef$get] fields variable is a list.
biodb.TRACE[2023-11-02 08:45:56.554][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-11-02 08:45:56.556][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-11-02 08:45:56.557][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-11-02 08:45:56.559][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-11-02 08:45:56.560][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2023-11-02 08:45:56.562][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2023-11-02 08:45:56.563][ef$get] 1 fields were returned.
biodb.TRACE[2023-11-02 08:45:56.565][ef$get] fields variable is a list.
biodb.TRACE[2023-11-02 08:45:56.567][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2023-11-02 08:45:56.568][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2023-11-02 08:45:56.569][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-11-02 08:45:56.571][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-11-02 08:45:56.572][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2023-11-02 08:45:56.574][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2023-11-02 08:45:56.575][ef$get] 1 fields were returned.
biodb.TRACE[2023-11-02 08:45:56.577][ef$get] fields variable is a list.
biodb.TRACE[2023-11-02 08:45:56.579][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2023-11-02 08:45:56.580][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2023-11-02 08:45:56.582][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-11-02 08:45:56.583][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-11-02 08:45:56.585][ef$get] Asked field names are: formula.
biodb.TRACE[2023-11-02 08:45:56.586][ef$get] Realnames of fields are: formula.
biodb.TRACE[2023-11-02 08:45:56.588][ef$get] 1 fields were returned.
biodb.TRACE[2023-11-02 08:45:56.589][ef$get] fields variable is a list.
biodb.TRACE[2023-11-02 08:45:56.591][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2023-11-02 08:45:56.592][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2023-11-02 08:45:56.594][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-11-02 08:45:56.595][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-11-02 08:45:56.597][ef$get] Asked field names are: inchi.
biodb.TRACE[2023-11-02 08:45:56.598][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2023-11-02 08:45:56.600][ef$get] 1 fields were returned.
biodb.TRACE[2023-11-02 08:45:56.601][ef$get] fields variable is a list.
biodb.TRACE[2023-11-02 08:45:56.603][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2023-11-02 08:45:56.604][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2023-11-02 08:45:56.606][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-11-02 08:45:56.607][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-11-02 08:45:56.609][ef$get] Asked field names are: inchikey.
biodb.TRACE[2023-11-02 08:45:56.610][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-11-02 08:45:56.612][ef$get] 1 fields were returned.
biodb.TRACE[2023-11-02 08:45:56.613][ef$get] fields variable is a list.
biodb.TRACE[2023-11-02 08:45:56.615][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2023-11-02 08:45:56.617][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-11-02 08:45:56.618][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-11-02 08:45:56.619][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-11-02 08:45:56.621][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-11-02 08:45:56.622][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-11-02 08:45:56.624][ef$get] 1 fields were returned.
biodb.TRACE[2023-11-02 08:45:56.625][ef$get] fields variable is a list.
biodb.TRACE[2023-11-02 08:45:56.627][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-11-02 08:45:56.629][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-11-02 08:45:56.630][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-11-02 08:45:56.632][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-11-02 08:45:56.633][ef$get] Asked field names are: name.
biodb.TRACE[2023-11-02 08:45:56.635][ef$get] Realnames of fields are: name.
biodb.TRACE[2023-11-02 08:45:56.636][ef$get] 1 fields were returned.
biodb.TRACE[2023-11-02 08:45:56.637][ef$get] fields variable is a list.
biodb.TRACE[2023-11-02 08:45:56.639][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2023-11-02 08:45:56.640][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2023-11-02 08:45:56.642][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-11-02 08:45:56.643][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-11-02 08:45:56.645][ef$get] Asked field names are: description.
biodb.TRACE[2023-11-02 08:45:56.646][ef$get] Realnames of fields are: description.
biodb.TRACE[2023-11-02 08:45:56.647][ef$get] 1 fields were returned.
biodb.TRACE[2023-11-02 08:45:56.649][ef$get] fields variable is a list.
biodb.TRACE[2023-11-02 08:45:56.650][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2023-11-02 08:45:56.652][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2023-11-02 08:45:56.653][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-11-02 08:45:56.654][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-11-02 08:45:56.656][ef$get] Asked field names are: smiles.
biodb.TRACE[2023-11-02 08:45:56.657][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2023-11-02 08:45:56.659][ef$get] 1 fields were returned.
biodb.TRACE[2023-11-02 08:45:56.660][ef$get] fields variable is a list.
biodb.TRACE[2023-11-02 08:45:56.662][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2023-11-02 08:45:56.663][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2023-11-02 08:45:56.665][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-11-02 08:45:56.666][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-11-02 08:45:56.667][ef$get] Asked field names are: super.class.
biodb.TRACE[2023-11-02 08:45:56.669][ef$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2023-11-02 08:45:56.670][ef$get] 1 fields were returned.
biodb.TRACE[2023-11-02 08:45:56.671][ef$get] fields variable is a list.
biodb.TRACE[2023-11-02 08:45:56.673][self$getBiodb()$getEntryFields()$get] Asked field names are: super.class.
biodb.TRACE[2023-11-02 08:45:56.675][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2023-11-02 08:45:56.676][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-11-02 08:45:56.677][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-11-02 08:45:56.679][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-11-02 08:45:56.681][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-11-02 08:45:56.682][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-11-02 08:45:56.683][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-11-02 08:45:56.685][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-11-02 08:45:56.686][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-11-02 08:45:56.687][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-11-02 08:45:56.689][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-11-02 08:45:56.690][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-11-02 08:45:56.692][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-11-02 08:45:56.693][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-11-02 08:45:56.694][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-11-02 08:45:56.696][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2023-11-02 08:45:56.697][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2023-11-02 08:45:56.699][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-11-02 08:45:56.700][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-11-02 08:45:56.701][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2023-11-02 08:45:56.703][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2023-11-02 08:45:56.704][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-11-02 08:45:56.705][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-11-02 08:45:56.707][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2023-11-02 08:45:56.708][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2023-11-02 08:45:56.709][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-11-02 08:45:56.711][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-11-02 08:45:56.712][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2023-11-02 08:45:56.714][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2023-11-02 08:45:56.715][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-11-02 08:45:56.716][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-11-02 08:45:56.718][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2023-11-02 08:45:56.719][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2023-11-02 08:45:56.720][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-11-02 08:45:56.729][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-11-02 08:45:56.731][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2023-11-02 08:45:56.732][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2023-11-02 08:45:56.734][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-11-02 08:45:56.735][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-11-02 08:45:56.736][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-11-02 08:45:56.738][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-11-02 08:45:56.739][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-11-02 08:45:56.740][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-11-02 08:45:56.742][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-11-02 08:45:56.743][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-11-02 08:45:56.744][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-11-02 08:45:56.746][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-11-02 08:45:56.747][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-11-02 08:45:56.749][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-11-02 08:45:56.750][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-11-02 08:45:56.751][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-11-02 08:45:56.753][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2023-11-02 08:45:56.754][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2023-11-02 08:45:56.755][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-11-02 08:45:56.757][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-11-02 08:45:56.758][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2023-11-02 08:45:56.760][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2023-11-02 08:45:56.761][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-11-02 08:45:56.762][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-11-02 08:45:56.764][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2023-11-02 08:45:56.765][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2023-11-02 08:45:56.766][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-11-02 08:45:56.768][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-11-02 08:45:56.769][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2023-11-02 08:45:56.771][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2023-11-02 08:45:56.772][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-11-02 08:45:56.773][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-11-02 08:45:56.775][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2023-11-02 08:45:56.776][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2023-11-02 08:45:56.777][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-11-02 08:45:56.779][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-11-02 08:45:56.780][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2023-11-02 08:45:56.781][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2023-11-02 08:45:56.783][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-11-02 08:45:56.784][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-11-02 08:45:56.785][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2023-11-02 08:45:56.787][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2023-11-02 08:45:56.788][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-11-02 08:45:56.789][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-11-02 08:45:56.791][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2023-11-02 08:45:56.792][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2023-11-02 08:45:56.794][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-11-02 08:45:56.795][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-11-02 08:45:56.796][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2023-11-02 08:45:56.798][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2023-11-02 08:45:56.799][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-11-02 08:45:56.800][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-11-02 08:45:56.802][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.super.class.
biodb.TRACE[2023-11-02 08:45:56.803][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2023-11-02 08:45:56.805][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-11-02 08:45:56.806][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-11-02 08:45:56.807][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.super.class.
biodb.TRACE[2023-11-02 08:45:56.809][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2023-11-02 08:45:56.810][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-11-02 08:45:56.812][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-11-02 08:45:56.813][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.super.class.
biodb.TRACE[2023-11-02 08:45:56.814][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2023-11-02 08:45:56.816][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-11-02 08:45:56.817][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-11-02 08:45:56.819][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2023-11-02 08:45:56.820][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2023-11-02 08:45:56.821][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-11-02 08:45:56.823][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-11-02 08:45:56.824][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2023-11-02 08:45:56.826][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2023-11-02 08:45:56.827][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-11-02 08:45:56.828][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-11-02 08:45:56.830][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2023-11-02 08:45:56.831][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2023-11-02 08:45:56.833][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-11-02 08:45:56.834][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-11-02 08:45:56.835][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2023-11-02 08:45:56.837][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2023-11-02 08:45:56.838][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-11-02 08:45:56.840][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-11-02 08:45:56.841][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2023-11-02 08:45:56.842][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2023-11-02 08:45:56.844][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-11-02 08:45:56.845][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-11-02 08:45:56.846][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2023-11-02 08:45:56.848][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2023-11-02 08:45:56.849][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-11-02 08:45:56.851][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-11-02 08:45:56.852][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2023-11-02 08:45:56.854][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2023-11-02 08:45:56.855][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-11-02 08:45:56.856][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-11-02 08:45:56.858][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2023-11-02 08:45:56.859][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2023-11-02 08:45:56.860][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-11-02 08:45:56.862][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-11-02 08:45:56.863][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2023-11-02 08:45:56.865][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2023-11-02 08:45:56.866][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-11-02 08:45:56.867][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-11-02 08:45:56.869][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2023-11-02 08:45:56.870][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-11-02 08:45:56.872][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-11-02 08:45:56.873][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-11-02 08:45:56.874][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2023-11-02 08:45:56.876][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-11-02 08:45:56.877][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-11-02 08:45:56.879][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-11-02 08:45:56.880][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2023-11-02 08:45:56.881][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-11-02 08:45:56.883][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-11-02 08:45:56.884][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-11-02 08:45:56.886][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2023-11-02 08:45:56.887][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2023-11-02 08:45:56.888][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-11-02 08:45:56.890][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-11-02 08:45:56.891][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2023-11-02 08:45:56.893][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2023-11-02 08:45:56.894][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-11-02 08:45:56.895][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-11-02 08:45:56.897][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2023-11-02 08:45:56.898][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2023-11-02 08:45:56.899][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-11-02 08:45:56.908][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-11-02 08:45:56.910][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-11-02 08:45:56.911][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-11-02 08:45:56.912][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-11-02 08:45:56.914][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-11-02 08:45:56.915][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-11-02 08:45:56.917][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-11-02 08:45:56.918][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-11-02 08:45:56.919][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-11-02 08:45:56.921][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-11-02 08:45:56.922][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-11-02 08:45:56.923][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-11-02 08:45:56.925][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-11-02 08:45:56.926][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2023-11-02 08:45:56.928][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2023-11-02 08:45:56.929][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-11-02 08:45:56.930][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-11-02 08:45:56.932][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2023-11-02 08:45:56.933][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2023-11-02 08:45:56.934][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-11-02 08:45:56.936][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-11-02 08:45:56.937][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2023-11-02 08:45:56.939][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2023-11-02 08:45:56.940][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-11-02 08:45:56.942][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-11-02 08:45:56.943][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-11-02 08:45:56.945][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-11-02 08:45:56.946][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-11-02 08:45:56.948][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-11-02 08:45:56.949][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-11-02 08:45:56.951][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-11-02 08:45:56.952][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-11-02 08:45:56.954][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-11-02 08:45:56.955][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-11-02 08:45:56.957][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-11-02 08:45:56.958][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-11-02 08:45:56.959][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-11-02 08:45:56.961][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2023-11-02 08:45:56.962][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2023-11-02 08:45:56.964][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-11-02 08:45:56.965][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-11-02 08:45:56.966][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2023-11-02 08:45:56.968][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2023-11-02 08:45:56.969][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-11-02 08:45:56.970][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-11-02 08:45:56.972][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2023-11-02 08:45:56.973][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2023-11-02 08:45:56.975][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-11-02 08:45:56.976][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-11-02 08:45:56.977][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2023-11-02 08:45:56.979][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2023-11-02 08:45:56.980][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-11-02 08:45:56.982][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-11-02 08:45:56.983][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2023-11-02 08:45:56.985][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2023-11-02 08:45:56.986][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-11-02 08:45:56.987][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-11-02 08:45:56.989][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2023-11-02 08:45:56.990][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2023-11-02 08:45:56.991][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-11-02 08:45:56.993][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-11-02 08:45:56.994][self$getBiodb()$getEntryFields()$get] Asked field names are: INCHIKEY.
biodb.TRACE[2023-11-02 08:45:56.996][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-11-02 08:45:56.997][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-11-02 08:45:56.998][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-11-02 08:45:57.000][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2023-11-02 08:45:57.001][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-11-02 08:45:57.003][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-11-02 08:45:57.004][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-11-02 08:45:57.005][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2023-11-02 08:45:57.007][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-11-02 08:45:57.008][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-11-02 08:45:57.010][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-11-02 08:45:57.011][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2023-11-02 08:45:57.012][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-11-02 08:45:57.014][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-11-02 08:45:57.015][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-11-02 08:45:57.017][self$getBiodb()$getEntryFields()$get] Asked field names are: INCHIKEY.
biodb.TRACE[2023-11-02 08:45:57.018][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-11-02 08:45:57.019][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-11-02 08:45:57.021][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-11-02 08:45:57.023][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2023-11-02 08:45:57.025][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2023-11-02 08:45:57.026][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-11-02 08:45:57.027][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-11-02 08:45:57.029][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2023-11-02 08:45:57.030][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2023-11-02 08:45:57.032][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-11-02 08:45:57.033][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-11-02 08:45:57.034][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2023-11-02 08:45:57.036][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2023-11-02 08:45:57.037][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-11-02 08:45:57.038][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-11-02 08:45:57.040][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2023-11-02 08:45:57.041][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2023-11-02 08:45:57.043][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-11-02 08:45:57.044][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-11-02 08:45:57.045][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2023-11-02 08:45:57.047][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2023-11-02 08:45:57.048][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-11-02 08:45:57.049][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-11-02 08:45:57.051][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2023-11-02 08:45:57.052][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2023-11-02 08:45:57.054][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-11-02 08:45:57.055][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-11-02 08:45:57.057][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2023-11-02 08:45:57.058][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2023-11-02 08:45:57.059][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-11-02 08:45:57.061][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-11-02 08:45:57.062][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-11-02 08:45:57.063][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-11-02 08:45:57.065][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-11-02 08:45:57.066][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-11-02 08:45:57.068][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2023-11-02 08:45:57.069][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2023-11-02 08:45:57.070][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-11-02 08:45:57.072][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-11-02 08:45:57.073][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-11-02 08:45:57.075][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-11-02 08:45:57.076][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-11-02 08:45:57.077][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-11-02 08:45:57.079][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-11-02 08:45:57.080][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-11-02 08:45:57.081][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-11-02 08:45:57.090][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-11-02 08:45:57.092][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-11-02 08:45:57.093][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-11-02 08:45:57.094][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-11-02 08:45:57.096][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-11-02 08:45:57.097][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-11-02 08:45:57.099][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-11-02 08:45:57.100][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-11-02 08:45:57.101][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-11-02 08:45:57.103][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-11-02 08:45:57.104][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-11-02 08:45:57.105][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-11-02 08:45:57.107][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-11-02 08:45:57.108][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-11-02 08:45:57.109][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-11-02 08:45:57.111][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-11-02 08:45:57.112][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-11-02 08:45:57.113][self$createEntryFromContent] Accession numbers: HMDB0000001.
biodb.TRACE[2023-11-02 08:45:57.115][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.
biodb.TRACE[2023-11-02 08:45:57.116][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.
biodb.TRACE[2023-11-02 08:45:57.118][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-11-02 08:45:57.119][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-11-02 08:45:57.120][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.min.
biodb.TRACE[2023-11-02 08:45:57.122][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.min.
biodb.TRACE[2023-11-02 08:45:57.123][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-11-02 08:45:57.124][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-11-02 08:45:57.126][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.max.
biodb.TRACE[2023-11-02 08:45:57.127][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.max.
biodb.TRACE[2023-11-02 08:45:57.129][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-11-02 08:45:57.130][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.INFO [2023-11-02 08:45:57.144][biodb::testThat]
biodb.INFO [2023-11-02 08:45:57.146][biodb::testThat] Running test function test.searchForEntries (" We can search for an entry by searchable field ").
biodb.INFO [2023-11-02 08:45:57.147][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2023-11-02 08:45:57.148][biodb::testThat]
biodb.TRACE[2023-11-02 08:45:57.153][ef$get] Asked field names are: name.
biodb.TRACE[2023-11-02 08:45:57.154][ef$get] Realnames of fields are: name.
biodb.TRACE[2023-11-02 08:45:57.156][ef$get] 1 fields were returned.
biodb.TRACE[2023-11-02 08:45:57.157][ef$get] fields variable is a list.
biodb.DEBUG[2023-11-02 08:45:57.159][function(conn, opt)] Testing searchForEntries() with entry "HMDB0000001" and field "name".
biodb.TRACE[2023-11-02 08:45:57.200][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2023-11-02 08:45:57.201][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2023-11-02 08:45:57.203][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-11-02 08:45:57.204][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-11-02 08:45:57.205][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2023-11-02 08:45:57.207][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2023-11-02 08:45:57.208][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-11-02 08:45:57.209][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-11-02 08:45:57.210][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2023-11-02 08:45:57.212][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2023-11-02 08:45:57.213][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-11-02 08:45:57.214][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-11-02 08:45:57.219][function(conn, opt)] With value "1-Methylhistidine".
biodb.DEBUG[2023-11-02 08:45:57.221][private$doSearchForEntries] fields NAMES = name
biodb.DEBUG[2023-11-02 08:45:57.222][private$doSearchForEntries] fields VALUES = 1-Methylhistidine
biodb.DEBUG[2023-11-02 08:45:57.224][private$doSearchForEntries] fields VALUES = 1-Methylhistidine
biodb.DEBUG[2023-11-02 08:45:57.226][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2023-11-02 08:45:57.228][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2023-11-02 08:45:57.229][private$doGetEntryIds] .doGetEntryIds 10
biodb.DEBUG[2023-11-02 08:45:57.231][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2023-11-02 08:45:57.232][private$doGetEntryIds] .doGetEntryIds 11
biodb.DEBUG[2023-11-02 08:45:57.234][private$doListFiles] List files in /home/biocbuild/.cache/R/biodb/hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34 using pattern ^.*\.xml$.
biodb.DEBUG[2023-11-02 08:45:57.235][cch$listFiles] Extracting accession number from file names associated with hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34 using pattern ^(.*)\.xml$
biodb.DEBUG[2023-11-02 08:45:57.237][cch$listFiles] files = HMDB0000001.xml, HMDB0000002.xml
biodb.DEBUG[2023-11-02 08:45:57.238][private$doGetEntryIds] COUNT IDS = 2
biodb.DEBUG[2023-11-02 08:45:57.240][private$doSearchForEntries] All IDs = [2]: "HMDB0000001, HMDB0000002"
biodb.DEBUG[2023-11-02 08:45:57.241][private$doSearchForEntries] Total number of IDs = 2
biodb.TRACE[2023-11-02 08:45:57.243][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2023-11-02 08:45:57.245][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2023-11-02 08:45:57.246][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-11-02 08:45:57.247][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-11-02 08:45:57.248][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2023-11-02 08:45:57.250][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2023-11-02 08:45:57.251][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-11-02 08:45:57.252][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-11-02 08:45:57.261][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2023-11-02 08:45:57.263][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2023-11-02 08:45:57.264][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-11-02 08:45:57.265][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-11-02 08:45:57.267][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2023-11-02 08:45:57.268][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2023-11-02 08:45:57.269][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-11-02 08:45:57.271][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-11-02 08:45:57.272][private$doSearchForEntries] MATCHED = TRUE
biodb.DEBUG[2023-11-02 08:45:57.273][private$doSearchForEntries] COUNT IDS = 1
biodb.DEBUG[2023-11-02 08:45:57.274][function(conn, opt)] With found IDs [1]: "HMDB0000001".
biodb.TRACE[2023-11-02 08:45:57.296][ef$get] Asked field names are: description.
biodb.TRACE[2023-11-02 08:45:57.297][ef$get] Realnames of fields are: description.
biodb.TRACE[2023-11-02 08:45:57.298][ef$get] 1 fields were returned.
biodb.TRACE[2023-11-02 08:45:57.300][ef$get] fields variable is a list.
biodb.DEBUG[2023-11-02 08:45:57.301][function(conn, opt)] Testing searchForEntries() with entry "HMDB0000001" and field "description".
biodb.TRACE[2023-11-02 08:45:57.323][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2023-11-02 08:45:57.324][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2023-11-02 08:45:57.326][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-11-02 08:45:57.327][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-11-02 08:45:57.328][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2023-11-02 08:45:57.329][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2023-11-02 08:45:57.331][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-11-02 08:45:57.332][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-11-02 08:45:57.333][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2023-11-02 08:45:57.335][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2023-11-02 08:45:57.336][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-11-02 08:45:57.337][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-11-02 08:45:57.342][function(conn, opt)] With value "1-Methylhistidine, also known as 1-MHis, belongs to the class of organic compounds known as histidine and derivatives. Histidine and derivatives are compounds containing cysteine or a derivative thereof resulting from a reaction of cysteine at the amino group or the carboxy group, or from the replacement of any hydrogen of glycine by a heteroatom. 1-Methylhistidine is derived mainly from the anserine of dietary flesh sources, especially poultry. The enzyme, carnosinase, splits anserine into beta-alanine and 1-MHis. High levels of 1-MHis tend to inhibit the enzyme carnosinase and increase anserine levels. Conversely, genetic variants with deficient carnosinase activity in plasma show increased 1-MHis excretions when they consume a high meat diet. Reduced serum carnosinase activity is also found in patients with Parkinson's disease and multiple sclerosis and patients following a cerebrovascular accident. Vitamin E deficiency can lead to 1-methylhistidinuria from increased oxidative effects in skeletal muscle. 1-Methylhistidine is a biomarker for the consumption of meat, especially red meat.".
biodb.DEBUG[2023-11-02 08:45:57.423][private$doSearchForEntries] fields NAMES = description
biodb.DEBUG[2023-11-02 08:45:57.425][private$doSearchForEntries] fields VALUES = 1-Methylhistidine, also known as 1-MHis, belongs to the class of organic compounds known as histidine and derivatives. Histidine and derivatives are compounds containing cysteine or a derivative thereof resulting from a reaction of cysteine at the amino group or the carboxy group, or from the replacement of any hydrogen of glycine by a heteroatom. 1-Methylhistidine is derived mainly from the anserine of dietary flesh sources, especially poultry. The enzyme, carnosinase, splits anserine into beta-alanine and 1-MHis. High levels of 1-MHis tend to inhibit the enzyme carnosinase and increase anserine levels. Conversely, genetic variants with deficient carnosinase activity in plasma show increased 1-MHis excretions when they consume a high meat diet. Reduced serum carnosinase activity is also found in patients with Parkinson's disease and multiple sclerosis and patients following a cerebrovascular accident. Vitamin E deficiency can lead to 1-methylhistidinuria from increased oxidative effects in skeletal muscle. 1-Methylhistidine is a biomarker for the consumption of meat, especially red meat.
biodb.DEBUG[2023-11-02 08:45:57.426][private$doSearchForEntries] fields VALUES = 1-Methylhistidine, also known as 1-MHis, belongs to the class of organic compounds known as histidine and derivatives. Histidine and derivatives are compounds containing cysteine or a derivative thereof resulting from a reaction of cysteine at the amino group or the carboxy group, or from the replacement of any hydrogen of glycine by a heteroatom. 1-Methylhistidine is derived mainly from the anserine of dietary flesh sources, especially poultry. The enzyme, carnosinase, splits anserine into beta-alanine and 1-MHis. High levels of 1-MHis tend to inhibit the enzyme carnosinase and increase anserine levels. Conversely, genetic variants with deficient carnosinase activity in plasma show increased 1-MHis excretions when they consume a high meat diet. Reduced serum carnosinase activity is also found in patients with Parkinson's disease and multiple sclerosis and patients following a cerebrovascular accident. Vitamin E deficiency can lead to 1-methylhistidinuria from increased oxidative effects in skeletal muscle. 1-Methylhistidine is a biomarker for the consumption of meat, especially red meat.
biodb.DEBUG[2023-11-02 08:45:57.446][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2023-11-02 08:45:57.448][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2023-11-02 08:45:57.450][private$doGetEntryIds] .doGetEntryIds 10
biodb.DEBUG[2023-11-02 08:45:57.451][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2023-11-02 08:45:57.453][private$doGetEntryIds] .doGetEntryIds 11
biodb.DEBUG[2023-11-02 08:45:57.474][private$doListFiles] List files in /home/biocbuild/.cache/R/biodb/hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34 using pattern ^.*\.xml$.
biodb.DEBUG[2023-11-02 08:45:57.476][cch$listFiles] Extracting accession number from file names associated with hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34 using pattern ^(.*)\.xml$
biodb.DEBUG[2023-11-02 08:45:57.477][cch$listFiles] files = HMDB0000001.xml, HMDB0000002.xml
biodb.DEBUG[2023-11-02 08:45:57.478][private$doGetEntryIds] COUNT IDS = 2
biodb.DEBUG[2023-11-02 08:45:57.480][private$doSearchForEntries] All IDs = [2]: "HMDB0000001, HMDB0000002"
biodb.DEBUG[2023-11-02 08:45:57.481][private$doSearchForEntries] Total number of IDs = 2
biodb.TRACE[2023-11-02 08:45:57.483][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2023-11-02 08:45:57.484][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2023-11-02 08:45:57.486][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-11-02 08:45:57.487][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-11-02 08:45:57.488][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2023-11-02 08:45:57.490][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2023-11-02 08:45:57.491][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-11-02 08:45:57.492][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-11-02 08:45:57.493][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2023-11-02 08:45:57.495][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2023-11-02 08:45:57.496][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-11-02 08:45:57.497][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-11-02 08:45:57.499][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2023-11-02 08:45:57.500][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2023-11-02 08:45:57.501][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-11-02 08:45:57.502][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-11-02 08:45:57.504][private$doSearchForEntries] MATCHED = TRUE
biodb.DEBUG[2023-11-02 08:45:57.505][private$doSearchForEntries] COUNT IDS = 1
biodb.DEBUG[2023-11-02 08:45:57.506][function(conn, opt)] With found IDs [1]: "HMDB0000001".
biodb.TRACE[2023-11-02 08:45:57.527][ef$get] Asked field names are: secondary.accessions.
biodb.TRACE[2023-11-02 08:45:57.529][ef$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2023-11-02 08:45:57.530][ef$get] 1 fields were returned.
biodb.TRACE[2023-11-02 08:45:57.531][ef$get] fields variable is a list.
biodb.DEBUG[2023-11-02 08:45:57.533][function(conn, opt)] Testing searchForEntries() with entry "HMDB0000001" and field "secondary.accessions".
biodb.TRACE[2023-11-02 08:45:57.554][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2023-11-02 08:45:57.556][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2023-11-02 08:45:57.557][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-11-02 08:45:57.558][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-11-02 08:45:57.560][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2023-11-02 08:45:57.561][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2023-11-02 08:45:57.562][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-11-02 08:45:57.563][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-11-02 08:45:57.565][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2023-11-02 08:45:57.566][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2023-11-02 08:45:57.575][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-11-02 08:45:57.576][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-11-02 08:45:57.581][function(conn, opt)] With value "HMDB00001".
biodb.DEBUG[2023-11-02 08:45:57.583][private$doSearchForEntries] fields NAMES = secondary.accessions
biodb.DEBUG[2023-11-02 08:45:57.584][private$doSearchForEntries] fields VALUES = HMDB00001
biodb.DEBUG[2023-11-02 08:45:57.585][private$doSearchForEntries] fields VALUES = HMDB00001
biodb.DEBUG[2023-11-02 08:45:57.588][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2023-11-02 08:45:57.589][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2023-11-02 08:45:57.591][private$doGetEntryIds] .doGetEntryIds 10
biodb.DEBUG[2023-11-02 08:45:57.593][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2023-11-02 08:45:57.594][private$doGetEntryIds] .doGetEntryIds 11
biodb.DEBUG[2023-11-02 08:45:57.596][private$doListFiles] List files in /home/biocbuild/.cache/R/biodb/hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34 using pattern ^.*\.xml$.
biodb.DEBUG[2023-11-02 08:45:57.598][cch$listFiles] Extracting accession number from file names associated with hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34 using pattern ^(.*)\.xml$
biodb.DEBUG[2023-11-02 08:45:57.599][cch$listFiles] files = HMDB0000001.xml, HMDB0000002.xml
biodb.DEBUG[2023-11-02 08:45:57.600][private$doGetEntryIds] COUNT IDS = 2
biodb.DEBUG[2023-11-02 08:45:57.602][private$doSearchForEntries] All IDs = [2]: "HMDB0000001, HMDB0000002"
biodb.DEBUG[2023-11-02 08:45:57.603][private$doSearchForEntries] Total number of IDs = 2
biodb.TRACE[2023-11-02 08:45:57.605][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2023-11-02 08:45:57.607][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2023-11-02 08:45:57.608][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-11-02 08:45:57.609][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-11-02 08:45:57.611][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2023-11-02 08:45:57.612][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2023-11-02 08:45:57.613][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-11-02 08:45:57.615][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-11-02 08:45:57.616][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2023-11-02 08:45:57.617][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2023-11-02 08:45:57.619][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-11-02 08:45:57.620][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-11-02 08:45:57.621][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2023-11-02 08:45:57.623][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2023-11-02 08:45:57.624][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-11-02 08:45:57.625][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-11-02 08:45:57.627][private$doSearchForEntries] MATCHED = TRUE
biodb.DEBUG[2023-11-02 08:45:57.628][private$doSearchForEntries] COUNT IDS = 1
biodb.DEBUG[2023-11-02 08:45:57.629][function(conn, opt)] With found IDs [1]: "HMDB0000001".
biodb.INFO [2023-11-02 08:45:57.656][biodb::testThat]
biodb.INFO [2023-11-02 08:45:57.658][biodb::testThat] Running test function test.searchByName (" We can search for an entry by name. ").
biodb.INFO [2023-11-02 08:45:57.659][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2023-11-02 08:45:57.660][biodb::testThat]
biodb.TRACE[2023-11-02 08:45:57.679][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2023-11-02 08:45:57.681][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2023-11-02 08:45:57.682][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-11-02 08:45:57.683][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-11-02 08:45:57.684][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2023-11-02 08:45:57.686][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2023-11-02 08:45:57.687][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-11-02 08:45:57.688][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-11-02 08:45:57.690][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2023-11-02 08:45:57.691][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2023-11-02 08:45:57.692][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-11-02 08:45:57.693][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-11-02 08:45:57.715][private$doSearchForEntries] fields NAMES = name
biodb.DEBUG[2023-11-02 08:45:57.716][private$doSearchForEntries] fields VALUES = 1-Methylhistidine
biodb.DEBUG[2023-11-02 08:45:57.718][private$doSearchForEntries] fields VALUES = 1-Methylhistidine
biodb.DEBUG[2023-11-02 08:45:57.720][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2023-11-02 08:45:57.722][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2023-11-02 08:45:57.723][private$doGetEntryIds] .doGetEntryIds 10
biodb.DEBUG[2023-11-02 08:45:57.725][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2023-11-02 08:45:57.726][private$doGetEntryIds] .doGetEntryIds 11
biodb.DEBUG[2023-11-02 08:45:57.728][private$doListFiles] List files in /home/biocbuild/.cache/R/biodb/hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34 using pattern ^.*\.xml$.
biodb.DEBUG[2023-11-02 08:45:57.730][cch$listFiles] Extracting accession number from file names associated with hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34 using pattern ^(.*)\.xml$
biodb.DEBUG[2023-11-02 08:45:57.731][cch$listFiles] files = HMDB0000001.xml, HMDB0000002.xml
biodb.DEBUG[2023-11-02 08:45:57.732][private$doGetEntryIds] COUNT IDS = 2
biodb.DEBUG[2023-11-02 08:45:57.733][private$doSearchForEntries] All IDs = [2]: "HMDB0000001, HMDB0000002"
biodb.DEBUG[2023-11-02 08:45:57.735][private$doSearchForEntries] Total number of IDs = 2
biodb.TRACE[2023-11-02 08:45:57.737][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2023-11-02 08:45:57.738][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2023-11-02 08:45:57.740][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-11-02 08:45:57.741][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-11-02 08:45:57.750][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2023-11-02 08:45:57.752][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2023-11-02 08:45:57.753][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-11-02 08:45:57.755][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-11-02 08:45:57.756][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2023-11-02 08:45:57.757][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2023-11-02 08:45:57.759][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-11-02 08:45:57.760][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-11-02 08:45:57.761][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2023-11-02 08:45:57.763][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2023-11-02 08:45:57.764][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-11-02 08:45:57.765][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-11-02 08:45:57.766][private$doSearchForEntries] MATCHED = TRUE
biodb.DEBUG[2023-11-02 08:45:57.768][private$doSearchForEntries] COUNT IDS = 1
biodb.INFO [2023-11-02 08:45:57.795][biodb::testThat]
biodb.INFO [2023-11-02 08:45:57.796][biodb::testThat] Running test function testEntryLoading (" We can load an entry from the database. ").
biodb.INFO [2023-11-02 08:45:57.798][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2023-11-02 08:45:57.799][biodb::testThat]
biodb.TRACE[2023-11-02 08:45:57.829][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2023-11-02 08:45:57.831][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2023-11-02 08:45:57.832][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-11-02 08:45:57.833][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-11-02 08:45:57.834][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2023-11-02 08:45:57.836][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2023-11-02 08:45:57.837][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-11-02 08:45:57.838][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-11-02 08:45:57.840][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2023-11-02 08:45:57.841][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2023-11-02 08:45:57.842][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-11-02 08:45:57.844][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-11-02 08:45:57.845][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2023-11-02 08:45:57.846][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2023-11-02 08:45:57.848][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-11-02 08:45:57.849][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-11-02 08:45:57.937][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2023-11-02 08:45:57.939][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2023-11-02 08:45:57.940][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-11-02 08:45:57.941][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-11-02 08:45:57.943][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2023-11-02 08:45:57.944][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2023-11-02 08:45:57.945][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-11-02 08:45:57.947][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-11-02 08:45:57.948][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2023-11-02 08:45:57.949][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2023-11-02 08:45:57.951][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-11-02 08:45:57.952][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-11-02 08:45:57.953][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2023-11-02 08:45:57.955][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2023-11-02 08:45:57.956][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-11-02 08:45:57.957][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.INFO [2023-11-02 08:45:57.968][biodb::testThat]
biodb.INFO [2023-11-02 08:45:57.969][biodb::testThat] Running test function test.entry.page.url (" We can get a URL pointing to the entry page. ").
biodb.INFO [2023-11-02 08:45:57.971][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2023-11-02 08:45:57.972][biodb::testThat]
biodb.INFO [2023-11-02 08:45:57.984][biodb::testThat]
biodb.INFO [2023-11-02 08:45:57.986][biodb::testThat] Running test function test.entry.image.url (" We can get a URL pointing to the entry image. ").
biodb.INFO [2023-11-02 08:45:57.987][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2023-11-02 08:45:57.988][biodb::testThat]
biodb.INFO [2023-11-02 08:45:58.001][biodb::testThat]
biodb.INFO [2023-11-02 08:45:58.002][biodb::testThat] Running test function test.entry.page.url.download (" The entry page URL can be downloaded. ").
biodb.INFO [2023-11-02 08:45:58.004][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2023-11-02 08:45:58.005][biodb::testThat]
biodb.DEBUG[2023-11-02 08:45:58.010][function(conn, opt)] Trying to download "http://www.hmdb.ca/metabolites/HMDB0000001".
biodb.DEBUG[2023-11-02 08:46:00.181][getUrlContent] Use RCurl for downloading content of URL http://www.hmdb.ca/metabolites/HMDB0000001.
biodb.INFO [2023-11-02 08:46:00.713][biodb::testThat]
biodb.INFO [2023-11-02 08:46:00.714][biodb::testThat] Running test function test.entry.image.url.download (" The entry image URL can be downloaded. ").
biodb.INFO [2023-11-02 08:46:00.716][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2023-11-02 08:46:00.717][biodb::testThat]
biodb.DEBUG[2023-11-02 08:46:03.391][getUrlContent] Use RCurl for downloading content of URL http://www.hmdb.ca/structures/HMDB0000001/image.png.
biodb.TRACE[2023-11-02 08:46:03.960][ef$get] Asked field names are: name.
biodb.TRACE[2023-11-02 08:46:03.962][ef$get] Realnames of fields are: name.
biodb.TRACE[2023-11-02 08:46:03.964][ef$get] 1 fields were returned.
biodb.TRACE[2023-11-02 08:46:03.966][ef$get] fields variable is a list.
biodb.TRACE[2023-11-02 08:46:03.968][ef$get] Asked field names are: description.
biodb.TRACE[2023-11-02 08:46:03.969][ef$get] Realnames of fields are: description.
biodb.TRACE[2023-11-02 08:46:03.971][ef$get] 1 fields were returned.
biodb.TRACE[2023-11-02 08:46:03.972][ef$get] fields variable is a list.
biodb.TRACE[2023-11-02 08:46:03.974][ef$get] Asked field names are: secondary.accessions.
biodb.TRACE[2023-11-02 08:46:03.975][ef$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2023-11-02 08:46:03.977][ef$get] 1 fields were returned.
biodb.TRACE[2023-11-02 08:46:03.978][ef$get] fields variable is a list.
biodb.INFO [2023-11-02 08:46:03.980][biodb::testThat]
biodb.INFO [2023-11-02 08:46:03.982][biodb::testThat] Running test function test.wrong.entry (" Wrong entry gives NULL ").
biodb.INFO [2023-11-02 08:46:03.983][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2023-11-02 08:46:03.984][biodb::testThat]
biodb.DEBUG[2023-11-02 08:46:04.005][private$loadEntries] Creating entries from ids [1]: "WRONGA".
biodb.DEBUG[2023-11-02 08:46:04.075][conn$getEntryContent] Get HMDB Metabolites entry content(s) for 1 id(s)...
biodb.DEBUG[2023-11-02 08:46:04.078][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2023-11-02 08:46:04.080][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.TRACE[2023-11-02 08:46:04.103][cch$loadFileContent] Trying to load 1 files from cache: [1]: "WRONGA".
biodb.TRACE[2023-11-02 08:46:04.105][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2023-11-02 08:46:04.106][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2023-11-02 08:46:04.108][conn$getEntryContent] 0 HMDB Metabolites entry content(s) loaded from cache.
biodb.DEBUG[2023-11-02 08:46:04.110][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2023-11-02 08:46:04.112][self$createEntryFromContent] Creating HMDB Metabolites entries from 1 content(s).
biodb.DEBUG[2023-11-02 08:46:04.113][self$createEntryFromContent] Parsing 1 HMDB Metabolites entries.
biodb.DEBUG[2023-11-02 08:46:04.116][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-11-02 08:46:04.117][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-11-02 08:46:04.118][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-11-02 08:46:04.135][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-11-02 08:46:04.136][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-11-02 08:46:04.137][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-11-02 08:46:04.139][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-11-02 08:46:04.141][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2023-11-02 08:46:04.143][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2023-11-02 08:46:04.144][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-11-02 08:46:04.145][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-11-02 08:46:04.150][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2023-11-02 08:46:04.152][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2023-11-02 08:46:04.154][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-11-02 08:46:04.155][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-11-02 08:46:04.157][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-11-02 08:46:04.159][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-11-02 08:46:04.160][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-11-02 08:46:04.162][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-11-02 08:46:04.164][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-11-02 08:46:04.165][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-11-02 08:46:04.167][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-11-02 08:46:04.168][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-11-02 08:46:04.170][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-11-02 08:46:04.172][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-11-02 08:46:04.173][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-11-02 08:46:04.175][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-11-02 08:46:04.177][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-11-02 08:46:04.178][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-11-02 08:46:04.180][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-11-02 08:46:04.181][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-11-02 08:46:04.183][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-11-02 08:46:04.185][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-11-02 08:46:04.186][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-11-02 08:46:04.188][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-11-02 08:46:04.190][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-11-02 08:46:04.192][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-11-02 08:46:04.193][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-11-02 08:46:04.195][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-11-02 08:46:04.197][self$createEntryFromContent] Accession numbers: NA.
biodb.DEBUG[2023-11-02 08:46:04.198][self$createEntryFromContent] Found 1 entry/ies without an accession number. Set it/them to NULL.
biodb.INFO [2023-11-02 08:46:04.231][biodb::testThat]
biodb.INFO [2023-11-02 08:46:04.233][biodb::testThat] Running test function test.wrong.entry.among.good.ones (" One wrong entry does not block the retrieval of good ones ").
biodb.INFO [2023-11-02 08:46:04.234][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2023-11-02 08:46:04.235][biodb::testThat]
biodb.DEBUG[2023-11-02 08:46:04.248][function(conn, opt)] IDS: [2]: "WRONGB, HMDB0000001"
biodb.DEBUG[2023-11-02 08:46:04.250][private$loadEntries] Creating entries from ids [1]: "WRONGB".
biodb.DEBUG[2023-11-02 08:46:04.251][conn$getEntryContent] Get HMDB Metabolites entry content(s) for 1 id(s)...
biodb.DEBUG[2023-11-02 08:46:04.254][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2023-11-02 08:46:04.256][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.TRACE[2023-11-02 08:46:04.259][cch$loadFileContent] Trying to load 1 files from cache: [1]: "WRONGB".
biodb.TRACE[2023-11-02 08:46:04.261][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2023-11-02 08:46:04.263][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2023-11-02 08:46:04.265][conn$getEntryContent] 0 HMDB Metabolites entry content(s) loaded from cache.
biodb.DEBUG[2023-11-02 08:46:04.267][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2023-11-02 08:46:04.269][self$createEntryFromContent] Creating HMDB Metabolites entries from 1 content(s).
biodb.DEBUG[2023-11-02 08:46:04.271][self$createEntryFromContent] Parsing 1 HMDB Metabolites entries.
biodb.DEBUG[2023-11-02 08:46:04.274][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-11-02 08:46:04.275][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-11-02 08:46:04.277][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-11-02 08:46:04.286][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-11-02 08:46:04.288][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-11-02 08:46:04.303][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-11-02 08:46:04.305][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-11-02 08:46:04.308][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2023-11-02 08:46:04.310][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2023-11-02 08:46:04.311][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-11-02 08:46:04.313][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-11-02 08:46:04.314][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2023-11-02 08:46:04.316][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2023-11-02 08:46:04.317][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-11-02 08:46:04.319][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-11-02 08:46:04.320][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-11-02 08:46:04.322][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-11-02 08:46:04.323][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-11-02 08:46:04.325][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-11-02 08:46:04.326][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-11-02 08:46:04.328][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-11-02 08:46:04.329][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-11-02 08:46:04.331][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-11-02 08:46:04.332][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-11-02 08:46:04.334][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-11-02 08:46:04.335][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-11-02 08:46:04.337][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-11-02 08:46:04.338][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-11-02 08:46:04.340][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-11-02 08:46:04.341][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-11-02 08:46:04.343][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-11-02 08:46:04.344][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-11-02 08:46:04.346][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-11-02 08:46:04.347][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-11-02 08:46:04.348][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-11-02 08:46:04.350][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-11-02 08:46:04.351][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-11-02 08:46:04.353][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-11-02 08:46:04.354][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-11-02 08:46:04.356][self$createEntryFromContent] Accession numbers: NA.
biodb.DEBUG[2023-11-02 08:46:04.357][self$createEntryFromContent] Found 1 entry/ies without an accession number. Set it/them to NULL.
biodb.DEBUG[2023-11-02 08:46:04.358][function(conn, opt)] Entries: [2]: "NULL, <environment>"
biodb.INFO [2023-11-02 08:46:04.382][biodb::testThat]
biodb.INFO [2023-11-02 08:46:04.383][biodb::testThat] Running test function test.peak.table (" The peak table is correct. ").
biodb.INFO [2023-11-02 08:46:04.384][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2023-11-02 08:46:04.386][biodb::testThat]
biodb.INFO [2023-11-02 08:46:04.420][biodb::testThat]
biodb.INFO [2023-11-02 08:46:04.421][biodb::testThat] Running test function test.nb.entries (" Nb entries is positive. ").
biodb.INFO [2023-11-02 08:46:04.423][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2023-11-02 08:46:04.424][biodb::testThat]
biodb.DEBUG[2023-11-02 08:46:04.427][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2023-11-02 08:46:04.430][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2023-11-02 08:46:04.431][private$doGetEntryIds] .doGetEntryIds 10
biodb.DEBUG[2023-11-02 08:46:04.433][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2023-11-02 08:46:04.435][private$doGetEntryIds] .doGetEntryIds 11
biodb.DEBUG[2023-11-02 08:46:04.437][private$doListFiles] List files in /home/biocbuild/.cache/R/biodb/hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34 using pattern ^.*\.xml$.
biodb.DEBUG[2023-11-02 08:46:04.446][cch$listFiles] Extracting accession number from file names associated with hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34 using pattern ^(.*)\.xml$
biodb.DEBUG[2023-11-02 08:46:04.448][cch$listFiles] files = HMDB0000001.xml, HMDB0000002.xml
biodb.DEBUG[2023-11-02 08:46:04.449][private$doGetEntryIds] COUNT IDS = 2
biodb.INFO [2023-11-02 08:46:04.463][biodb::testThat]
biodb.INFO [2023-11-02 08:46:04.465][biodb::testThat] Running test function test.entry.ids (" We can get a list of entry ids. ").
biodb.INFO [2023-11-02 08:46:04.466][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2023-11-02 08:46:04.468][biodb::testThat]
biodb.DEBUG[2023-11-02 08:46:04.471][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2023-11-02 08:46:04.474][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2023-11-02 08:46:04.476][private$doGetEntryIds] .doGetEntryIds 10
biodb.DEBUG[2023-11-02 08:46:04.478][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2023-11-02 08:46:04.479][private$doGetEntryIds] .doGetEntryIds 11
biodb.DEBUG[2023-11-02 08:46:04.481][private$doListFiles] List files in /home/biocbuild/.cache/R/biodb/hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34 using pattern ^.*\.xml$.
biodb.DEBUG[2023-11-02 08:46:04.483][cch$listFiles] Extracting accession number from file names associated with hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34 using pattern ^(.*)\.xml$
biodb.DEBUG[2023-11-02 08:46:04.484][cch$listFiles] files = HMDB0000001.xml, HMDB0000002.xml
biodb.DEBUG[2023-11-02 08:46:04.485][private$doGetEntryIds] COUNT IDS = 2
biodb.TRACE[2023-11-02 08:46:04.502][ef$get] Asked field names are: name.
biodb.TRACE[2023-11-02 08:46:04.503][ef$get] Realnames of fields are: name.
biodb.TRACE[2023-11-02 08:46:04.505][ef$get] 1 fields were returned.
biodb.TRACE[2023-11-02 08:46:04.506][ef$get] fields variable is a list.
biodb.TRACE[2023-11-02 08:46:04.507][ef$get] Asked field names are: description.
biodb.TRACE[2023-11-02 08:46:04.509][ef$get] Realnames of fields are: description.
biodb.TRACE[2023-11-02 08:46:04.510][ef$get] 1 fields were returned.
biodb.TRACE[2023-11-02 08:46:04.512][ef$get] fields variable is a list.
biodb.TRACE[2023-11-02 08:46:04.513][ef$get] Asked field names are: secondary.accessions.
biodb.TRACE[2023-11-02 08:46:04.514][ef$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2023-11-02 08:46:04.516][ef$get] 1 fields were returned.
biodb.TRACE[2023-11-02 08:46:04.517][ef$get] fields variable is a list.
biodb.INFO [2023-11-02 08:46:04.519][biodb$terminate] Closing BiodbMain instance...
biodb.DEBUG[2023-11-02 08:46:04.520][private$conn[[conn]]$.__enclos_env__ ...] Unregister connector hmdb.metabolites from the request scheduler
biodb.INFO [2023-11-02 08:46:04.532][self$deleteConn] Connector "hmdb.metabolites" deleted.
biodb.DEBUG[2023-11-02 08:46:04.534][notifyObservers] Notify observers for terminate.
biodb.DEBUG[2023-11-02 08:46:04.535][FUN] Trying to call function terminate on observer BiodbTestMsgAck.
biodb.DEBUG[2023-11-02 08:46:04.536][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-11-02 08:46:04.538][FUN] Trying to call function terminate on observer BiodbEntryFields.
biodb.DEBUG[2023-11-02 08:46:04.539][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-11-02 08:46:04.540][FUN] Trying to call function terminate on observer BiodbConfig.
biodb.DEBUG[2023-11-02 08:46:04.542][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.INFO [2023-11-02 08:46:04.548][biodb::testContext]
biodb.INFO [2023-11-02 08:46:04.549][biodb::testContext] ********************************************************************************
biodb.INFO [2023-11-02 08:46:04.550][biodb::testContext] Test context - Test retrieval of entries
biodb.INFO [2023-11-02 08:46:04.552][biodb::testContext] ********************************************************************************
biodb.INFO [2023-11-02 08:46:04.553][biodb::testContext]
biodb.INFO [2023-11-02 08:46:04.558][private$loadBiodbPkgsDefinitions] Loading definitions from package biodb version 1.10.0.
biodb.DEBUG[2023-11-02 08:46:04.561][self$loadDefinitions] Load definitions from file "/home/biocbuild/R/R-4.3.1/site-library/biodb/definitions.yml".
biodb.DEBUG[2023-11-02 08:46:04.566][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2023-11-02 08:46:04.567][self$getConfig()$define] Define config key allow.huge.downloads.
biodb.DEBUG[2023-11-02 08:46:04.569][self$set] Set key allow.huge.downloads to TRUE.
biodb.DEBUG[2023-11-02 08:46:04.571][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-11-02 08:46:04.572][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-11-02 08:46:04.574][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-11-02 08:46:04.575][self$getConfig()$define] Define config key autoload.extra.pkgs.
biodb.DEBUG[2023-11-02 08:46:04.577][self$set] Set key autoload.extra.pkgs to TRUE.
biodb.DEBUG[2023-11-02 08:46:04.578][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-11-02 08:46:04.579][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-11-02 08:46:04.581][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-11-02 08:46:04.582][self$getConfig()$define] Define config key cache.all.requests.
biodb.DEBUG[2023-11-02 08:46:04.584][self$set] Set key cache.all.requests to TRUE.
biodb.DEBUG[2023-11-02 08:46:04.585][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-11-02 08:46:04.586][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-11-02 08:46:04.596][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-11-02 08:46:04.598][self$getConfig()$define] Define config key cache.directory.
biodb.DEBUG[2023-11-02 08:46:04.599][self$getConfig()$define] Define config key cache.read.only.
biodb.DEBUG[2023-11-02 08:46:04.601][self$set] Set key cache.read.only to FALSE.
biodb.DEBUG[2023-11-02 08:46:04.602][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-11-02 08:46:04.603][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-11-02 08:46:04.604][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-11-02 08:46:04.606][self$getConfig()$define] Define config key cache.subfolders.
biodb.DEBUG[2023-11-02 08:46:04.607][self$getConfig()$define] Define config key cache.system.
biodb.DEBUG[2023-11-02 08:46:04.609][self$set] Set key cache.system to TRUE.
biodb.DEBUG[2023-11-02 08:46:04.610][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-11-02 08:46:04.611][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-11-02 08:46:04.613][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-11-02 08:46:04.614][self$getConfig()$define] Define config key use.cache.for.local.db.
biodb.DEBUG[2023-11-02 08:46:04.616][self$set] Set key use.cache.for.local.db to FALSE.
biodb.DEBUG[2023-11-02 08:46:04.617][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-11-02 08:46:04.618][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-11-02 08:46:04.620][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-11-02 08:46:04.621][self$getConfig()$define] Define config key dwnld.chunk.size.
biodb.DEBUG[2023-11-02 08:46:04.622][self$getConfig()$define] Define config key dwnld.timeout.
biodb.DEBUG[2023-11-02 08:46:04.624][self$set] Set key dwnld.timeout to 3600.
biodb.DEBUG[2023-11-02 08:46:04.625][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-11-02 08:46:04.627][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-11-02 08:46:04.628][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-11-02 08:46:04.629][self$getConfig()$define] Define config key compute.fields.
biodb.DEBUG[2023-11-02 08:46:04.631][self$set] Set key compute.fields to TRUE.
biodb.DEBUG[2023-11-02 08:46:04.632][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-11-02 08:46:04.633][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-11-02 08:46:04.635][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-11-02 08:46:04.636][self$getConfig()$define] Define config key factory.cache.
biodb.DEBUG[2023-11-02 08:46:04.638][self$getConfig()$define] Define config key force.locale.
biodb.DEBUG[2023-11-02 08:46:04.639][self$set] Set key force.locale to TRUE.
biodb.DEBUG[2023-11-02 08:46:04.641][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-11-02 08:46:04.642][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-11-02 08:46:04.643][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-11-02 08:46:04.645][self$getConfig()$define] Define config key longterm.cache.subfolder.
biodb.DEBUG[2023-11-02 08:46:04.646][self$getConfig()$define] Define config key msg.caution.lvl.
biodb.DEBUG[2023-11-02 08:46:04.648][self$getConfig()$define] Define config key msg.debug.lvl.
biodb.DEBUG[2023-11-02 08:46:04.649][self$getConfig()$define] Define config key msg.info.lvl.
biodb.DEBUG[2023-11-02 08:46:04.651][self$getConfig()$define] Define config key multival.field.sep.
biodb.DEBUG[2023-11-02 08:46:04.652][self$set] Set key multival.field.sep to ";".
biodb.DEBUG[2023-11-02 08:46:04.654][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-11-02 08:46:04.655][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-11-02 08:46:04.656][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-11-02 08:46:04.658][self$getConfig()$define] Define config key intra.field.name.sep.
biodb.DEBUG[2023-11-02 08:46:04.659][self$set] Set key intra.field.name.sep to ".".
biodb.DEBUG[2023-11-02 08:46:04.661][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-11-02 08:46:04.662][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-11-02 08:46:04.663][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-11-02 08:46:04.665][self$getConfig()$define] Define config key entries.sep.
biodb.DEBUG[2023-11-02 08:46:04.667][self$set] Set key entries.sep to "|".
biodb.DEBUG[2023-11-02 08:46:04.668][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-11-02 08:46:04.669][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-11-02 08:46:04.671][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-11-02 08:46:04.672][self$getConfig()$define] Define config key offline.
biodb.DEBUG[2023-11-02 08:46:04.674][self$set] Set key offline to FALSE.
biodb.DEBUG[2023-11-02 08:46:04.675][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-11-02 08:46:04.676][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-11-02 08:46:04.678][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-11-02 08:46:04.679][self$getConfig()$define] Define config key persistent.cache.impl.
biodb.DEBUG[2023-11-02 08:46:04.681][self$set] Set key persistent.cache.impl to "custom".
biodb.DEBUG[2023-11-02 08:46:04.682][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-11-02 08:46:04.684][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-11-02 08:46:04.685][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-11-02 08:46:04.687][self$getConfig()$define] Define config key proton.mass.
biodb.DEBUG[2023-11-02 08:46:04.689][self$set] Set key proton.mass to 1.0072765.
biodb.DEBUG[2023-11-02 08:46:04.690][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-11-02 08:46:04.691][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-11-02 08:46:04.693][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-11-02 08:46:04.694][self$getConfig()$define] Define config key shortterm.cache.subfolder.
biodb.DEBUG[2023-11-02 08:46:04.696][self$getConfig()$define] Define config key svn.binary.path.
biodb.DEBUG[2023-11-02 08:46:04.701][self$set] Set key svn.binary.path to "".
biodb.DEBUG[2023-11-02 08:46:04.702][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-11-02 08:46:04.703][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-11-02 08:46:04.704][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-11-02 08:46:04.706][self$getConfig()$define] Define config key test.functions.
biodb.DEBUG[2023-11-02 08:46:04.707][self$getConfig()$define] Define config key useragent.
biodb.DEBUG[2023-11-02 08:46:04.709][self$set] Set key useragent to "R Bioconductor biodb library.".
biodb.DEBUG[2023-11-02 08:46:04.710][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-11-02 08:46:04.711][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-11-02 08:46:04.713][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-11-02 08:46:04.714][self$getDbsInfo()$define] Define connector comp.csv.file.
biodb.DEBUG[2023-11-02 08:46:04.717][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2023-11-02 08:46:04.718][self$setPropertyValue] Setting property "description" to "A connector to handle a compound database stored inside a CSV file. It is possible to choose the separator for the CSV file, as well as match the column names with the biodb entry fields.".
biodb.DEBUG[2023-11-02 08:46:04.720][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2023-11-02 08:46:04.721][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2023-11-02 08:46:04.723][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2023-11-02 08:46:04.724][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2023-11-02 08:46:04.726][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2023-11-02 08:46:04.727][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2023-11-02 08:46:04.728][self$setPropertyValue] Setting property "entry.content.type" to "tsv".
biodb.DEBUG[2023-11-02 08:46:04.730][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2023-11-02 08:46:04.731][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2023-11-02 08:46:04.733][self$setPropertyValue] Setting property "name" to "Compound CSV File".
biodb.DEBUG[2023-11-02 08:46:04.734][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2023-11-02 08:46:04.736][self$setPropertyValue]
biodb.DEBUG[2023-11-02 08:46:04.737][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2023-11-02 08:46:04.746][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2023-11-02 08:46:04.746][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2023-11-02 08:46:04.746][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2023-11-02 08:46:04.746][self$setPropertyValue] Setting property "searchable.fields" to "average.mass".
biodb.DEBUG[2023-11-02 08:46:04.746][self$setPropertyValue] Setting property "searchable.fields" to "nominal.mass".
biodb.DEBUG[2023-11-02 08:46:04.748][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2023-11-02 08:46:04.749][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2023-11-02 08:46:04.750][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2023-11-02 08:46:04.752][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2023-11-02 08:46:04.753][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2023-11-02 08:46:04.754][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2023-11-02 08:46:04.756][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2023-11-02 08:46:04.757][self$setPropertyValue]
biodb.DEBUG[2023-11-02 08:46:04.759][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2023-11-02 08:46:04.760][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2023-11-02 08:46:04.761][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2023-11-02 08:46:04.763][self$setPropertyValue]
biodb.DEBUG[2023-11-02 08:46:04.764][self$getDbsInfo()$define] Define connector comp.sqlite.
biodb.DEBUG[2023-11-02 08:46:04.767][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2023-11-02 08:46:04.768][self$setPropertyValue] Setting property "description" to "A connector to handle a compound database stored inside an SQLite file.".
biodb.DEBUG[2023-11-02 08:46:04.770][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2023-11-02 08:46:04.771][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2023-11-02 08:46:04.772][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2023-11-02 08:46:04.774][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2023-11-02 08:46:04.775][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2023-11-02 08:46:04.777][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2023-11-02 08:46:04.778][self$setPropertyValue] Setting property "entry.content.type" to "list".
biodb.DEBUG[2023-11-02 08:46:04.780][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2023-11-02 08:46:04.781][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2023-11-02 08:46:04.782][self$setPropertyValue] Setting property "name" to "Compound SQLite".
biodb.DEBUG[2023-11-02 08:46:04.784][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2023-11-02 08:46:04.785][self$setPropertyValue]
biodb.DEBUG[2023-11-02 08:46:04.787][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2023-11-02 08:46:04.788][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2023-11-02 08:46:04.788][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2023-11-02 08:46:04.788][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2023-11-02 08:46:04.788][self$setPropertyValue] Setting property "searchable.fields" to "average.mass".
biodb.DEBUG[2023-11-02 08:46:04.788][self$setPropertyValue] Setting property "searchable.fields" to "nominal.mass".
biodb.DEBUG[2023-11-02 08:46:04.789][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2023-11-02 08:46:04.791][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2023-11-02 08:46:04.792][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2023-11-02 08:46:04.794][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2023-11-02 08:46:04.795][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2023-11-02 08:46:04.796][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2023-11-02 08:46:04.797][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2023-11-02 08:46:04.799][self$setPropertyValue]
biodb.DEBUG[2023-11-02 08:46:04.800][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2023-11-02 08:46:04.801][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2023-11-02 08:46:04.803][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2023-11-02 08:46:04.804][self$setPropertyValue]
biodb.DEBUG[2023-11-02 08:46:04.806][self$getDbsInfo()$define] Define connector mass.csv.file.
biodb.DEBUG[2023-11-02 08:46:04.808][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2023-11-02 08:46:04.810][self$setPropertyValue] Setting property "description" to "A connector to handle a mass spectra database stored inside a CSV file. It is possible to choose the separator for the CSV file, as well as match the column names with the biodb entry fields..".
biodb.DEBUG[2023-11-02 08:46:04.811][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2023-11-02 08:46:04.812][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2023-11-02 08:46:04.814][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2023-11-02 08:46:04.815][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2023-11-02 08:46:04.817][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2023-11-02 08:46:04.818][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2023-11-02 08:46:04.819][self$setPropertyValue] Setting property "entry.content.type" to "tsv".
biodb.DEBUG[2023-11-02 08:46:04.821][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2023-11-02 08:46:04.822][self$setPropertyValue] Setting property "mass.db" to "TRUE".
biodb.DEBUG[2023-11-02 08:46:04.824][self$setPropertyValue] Setting property "name" to "Mass spectra CSV File".
biodb.DEBUG[2023-11-02 08:46:04.825][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2023-11-02 08:46:04.826][self$setPropertyValue]
biodb.DEBUG[2023-11-02 08:46:04.828][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2023-11-02 08:46:04.829][self$setPropertyValue]
biodb.DEBUG[2023-11-02 08:46:04.831][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2023-11-02 08:46:04.832][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2023-11-02 08:46:04.833][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2023-11-02 08:46:04.835][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2023-11-02 08:46:04.836][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2023-11-02 08:46:04.837][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2023-11-02 08:46:04.839][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2023-11-02 08:46:04.840][self$setPropertyValue]
biodb.DEBUG[2023-11-02 08:46:04.841][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2023-11-02 08:46:04.843][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2023-11-02 08:46:04.844][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2023-11-02 08:46:04.845][self$setPropertyValue]
biodb.DEBUG[2023-11-02 08:46:04.847][self$getDbsInfo()$define] Define connector mass.sqlite.
biodb.DEBUG[2023-11-02 08:46:04.849][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2023-11-02 08:46:04.851][self$setPropertyValue] Setting property "description" to "A connector to handle a mass spectra database stored inside an SQLite file.".
biodb.DEBUG[2023-11-02 08:46:04.852][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2023-11-02 08:46:04.854][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2023-11-02 08:46:04.855][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2023-11-02 08:46:04.856][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2023-11-02 08:46:04.858][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2023-11-02 08:46:04.859][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2023-11-02 08:46:04.861][self$setPropertyValue] Setting property "entry.content.type" to "list".
biodb.DEBUG[2023-11-02 08:46:04.862][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2023-11-02 08:46:04.863][self$setPropertyValue] Setting property "mass.db" to "TRUE".
biodb.DEBUG[2023-11-02 08:46:04.865][self$setPropertyValue] Setting property "name" to "Mass spectra SQLite".
biodb.DEBUG[2023-11-02 08:46:04.866][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2023-11-02 08:46:04.868][self$setPropertyValue]
biodb.DEBUG[2023-11-02 08:46:04.869][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2023-11-02 08:46:04.870][self$setPropertyValue]
biodb.DEBUG[2023-11-02 08:46:04.872][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2023-11-02 08:46:04.873][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2023-11-02 08:46:04.874][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2023-11-02 08:46:04.876][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2023-11-02 08:46:04.885][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2023-11-02 08:46:04.886][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2023-11-02 08:46:04.887][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2023-11-02 08:46:04.889][self$setPropertyValue]
biodb.DEBUG[2023-11-02 08:46:04.890][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2023-11-02 08:46:04.891][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2023-11-02 08:46:04.893][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2023-11-02 08:46:04.894][self$setPropertyValue]
biodb.DEBUG[2023-11-02 08:46:04.896][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2023-11-02 08:46:04.897][FUN] Trying to call function notifyNewObservers on observer BiodbConfig.
biodb.DEBUG[2023-11-02 08:46:04.898][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-11-02 08:46:04.900][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-11-02 08:46:04.901][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2023-11-02 08:46:04.902][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-11-02 08:46:04.903][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-11-02 08:46:04.905][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-11-02 08:46:04.906][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-11-02 08:46:04.907][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2023-11-02 08:46:04.908][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-11-02 08:46:04.910][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-11-02 08:46:04.911][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-11-02 08:46:04.912][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-11-02 08:46:04.913][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2023-11-02 08:46:04.915][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-11-02 08:46:04.916][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-11-02 08:46:04.917][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-11-02 08:46:04.918][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-11-02 08:46:04.920][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2023-11-02 08:46:04.921][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-11-02 08:46:04.922][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-11-02 08:46:04.923][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-11-02 08:46:04.925][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-11-02 08:46:04.926][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2023-11-02 08:46:04.927][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-11-02 08:46:04.928][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-11-02 08:46:04.930][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-11-02 08:46:04.931][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-11-02 08:46:04.932][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2023-11-02 08:46:04.933][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-11-02 08:46:04.935][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-11-02 08:46:04.936][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-11-02 08:46:04.937][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-11-02 08:46:04.938][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2023-11-02 08:46:04.940][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-11-02 08:46:04.941][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-11-02 08:46:04.942][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-11-02 08:46:04.944][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-11-02 08:46:04.945][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2023-11-02 08:46:04.946][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-11-02 08:46:04.947][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-11-02 08:46:04.948][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-11-02 08:46:04.950][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-11-02 08:46:04.951][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2023-11-02 08:46:04.952][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-11-02 08:46:04.953][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-11-02 08:46:04.955][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-11-02 08:46:04.956][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-11-02 08:46:04.957][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2023-11-02 08:46:04.958][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-11-02 08:46:04.960][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-11-02 08:46:04.961][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-11-02 08:46:04.962][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-11-02 08:46:04.963][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2023-11-02 08:46:04.965][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-11-02 08:46:04.966][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-11-02 08:46:04.967][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-11-02 08:46:04.968][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-11-02 08:46:04.970][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2023-11-02 08:46:04.971][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-11-02 08:46:04.972][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-11-02 08:46:04.973][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-11-02 08:46:04.975][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-11-02 08:46:04.976][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2023-11-02 08:46:04.977][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-11-02 08:46:04.979][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-11-02 08:46:04.980][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-11-02 08:46:04.981][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-11-02 08:46:04.982][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2023-11-02 08:46:04.984][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-11-02 08:46:04.985][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-11-02 08:46:04.986][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-11-02 08:46:04.988][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-11-02 08:46:04.989][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2023-11-02 08:46:04.990][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-11-02 08:46:04.991][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-11-02 08:46:04.993][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-11-02 08:46:04.994][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-11-02 08:46:04.995][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2023-11-02 08:46:04.996][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-11-02 08:46:04.998][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-11-02 08:46:04.999][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-11-02 08:46:05.000][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-11-02 08:46:05.001][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2023-11-02 08:46:05.003][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-11-02 08:46:05.004][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-11-02 08:46:05.005][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-11-02 08:46:05.007][self$getEntryFields()$define] Define field accession.
biodb.DEBUG[2023-11-02 08:46:05.009][self$getEntryFields()$define] Define field description.
biodb.DEBUG[2023-11-02 08:46:05.011][self$getEntryFields()$define] Define field name.
biodb.DEBUG[2023-11-02 08:46:05.013][self$getEntryFields()$define] Define field cas.id.
biodb.DEBUG[2023-11-02 08:46:05.023][self$getEntryFields()$define] Define field chebi.id.
biodb.DEBUG[2023-11-02 08:46:05.025][self$getEntryFields()$define] Define field chemspider.id.
biodb.DEBUG[2023-11-02 08:46:05.027][self$getEntryFields()$define] Define field comp.csv.file.id.
biodb.DEBUG[2023-11-02 08:46:05.029][self$getEntryFields()$define] Define field comp.sqlite.id.
biodb.DEBUG[2023-11-02 08:46:05.031][self$getEntryFields()$define] Define field expasy.enzyme.id.
biodb.DEBUG[2023-11-02 08:46:05.033][self$getEntryFields()$define] Define field hmdb.metabolites.id.
biodb.DEBUG[2023-11-02 08:46:05.035][self$getEntryFields()$define] Define field kegg.compound.id.
biodb.DEBUG[2023-11-02 08:46:05.037][self$getEntryFields()$define] Define field kegg.genes.id.
biodb.DEBUG[2023-11-02 08:46:05.039][self$getEntryFields()$define] Define field mass.csv.file.id.
biodb.DEBUG[2023-11-02 08:46:05.041][self$getEntryFields()$define] Define field mass.sqlite.id.
biodb.DEBUG[2023-11-02 08:46:05.043][self$getEntryFields()$define] Define field ncbi.gene.id.
biodb.DEBUG[2023-11-02 08:46:05.045][self$getEntryFields()$define] Define field ncbi.pubchem.comp.id.
biodb.DEBUG[2023-11-02 08:46:05.047][self$getEntryFields()$define] Define field compound.id.
biodb.DEBUG[2023-11-02 08:46:05.049][self$getEntryFields()$define] Define field average.mass.
biodb.DEBUG[2023-11-02 08:46:05.050][self$getEntryFields()$define] Define field molecular.mass.
biodb.DEBUG[2023-11-02 08:46:05.052][self$getEntryFields()$define] Define field monoisotopic.mass.
biodb.DEBUG[2023-11-02 08:46:05.054][self$getEntryFields()$define] Define field nominal.mass.
biodb.DEBUG[2023-11-02 08:46:05.056][self$getEntryFields()$define] Define field peak.attr.
biodb.DEBUG[2023-11-02 08:46:05.058][self$getEntryFields()$define] Define field peak.comp.
biodb.DEBUG[2023-11-02 08:46:05.060][self$getEntryFields()$define] Define field peak.error.ppm.
biodb.DEBUG[2023-11-02 08:46:05.062][self$getEntryFields()$define] Define field peak.formula.
biodb.DEBUG[2023-11-02 08:46:05.064][self$getEntryFields()$define] Define field peak.intensity.
biodb.DEBUG[2023-11-02 08:46:05.066][self$getEntryFields()$define] Define field peak.mass.
biodb.DEBUG[2023-11-02 08:46:05.068][self$getEntryFields()$define] Define field peak.mztheo.
biodb.DEBUG[2023-11-02 08:46:05.070][self$getEntryFields()$define] Define field peak.mzexp.
biodb.DEBUG[2023-11-02 08:46:05.072][self$getEntryFields()$define] Define field peak.mz.
biodb.DEBUG[2023-11-02 08:46:05.074][self$getEntryFields()$define] Define field peak.relative.intensity.
biodb.DEBUG[2023-11-02 08:46:05.076][self$getEntryFields()$define] Define field peaks.
biodb.DEBUG[2023-11-02 08:46:05.078][self$getEntryFields()$define] Define field chrom.col.constructor.
biodb.DEBUG[2023-11-02 08:46:05.080][self$getEntryFields()$define] Define field chrom.col.diameter.
biodb.DEBUG[2023-11-02 08:46:05.082][self$getEntryFields()$define] Define field chrom.col.id.
biodb.DEBUG[2023-11-02 08:46:05.084][self$getEntryFields()$define] Define field chrom.col.length.
biodb.DEBUG[2023-11-02 08:46:05.086][self$getEntryFields()$define] Define field chrom.col.method.protocol.
biodb.DEBUG[2023-11-02 08:46:05.088][self$getEntryFields()$define] Define field chrom.col.name.
biodb.DEBUG[2023-11-02 08:46:05.090][self$getEntryFields()$define] Define field chrom.flow.gradient.
biodb.DEBUG[2023-11-02 08:46:05.092][self$getEntryFields()$define] Define field chrom.flow.rate.
biodb.DEBUG[2023-11-02 08:46:05.094][self$getEntryFields()$define] Define field chrom.rt.
biodb.DEBUG[2023-11-02 08:46:05.096][self$getEntryFields()$define] Define field chrom.rt.max.
biodb.DEBUG[2023-11-02 08:46:05.098][self$getEntryFields()$define] Define field chrom.rt.min.
biodb.DEBUG[2023-11-02 08:46:05.100][self$getEntryFields()$define] Define field chrom.rt.unit.
biodb.DEBUG[2023-11-02 08:46:05.102][self$getEntryFields()$define] Define field chrom.solvent.
biodb.DEBUG[2023-11-02 08:46:05.104][self$getEntryFields()$define] Define field aa.seq.
biodb.DEBUG[2023-11-02 08:46:05.106][self$getEntryFields()$define] Define field aa.seq.length.
biodb.DEBUG[2023-11-02 08:46:05.108][self$getEntryFields()$define] Define field aa.seq.location.
biodb.DEBUG[2023-11-02 08:46:05.110][self$getEntryFields()$define] Define field nt.seq.
biodb.DEBUG[2023-11-02 08:46:05.112][self$getEntryFields()$define] Define field nt.seq.length.
biodb.DEBUG[2023-11-02 08:46:05.114][self$getEntryFields()$define] Define field ec.
biodb.DEBUG[2023-11-02 08:46:05.116][self$getEntryFields()$define] Define field organism.
biodb.DEBUG[2023-11-02 08:46:05.118][self$getEntryFields()$define] Define field pathway.class.
biodb.DEBUG[2023-11-02 08:46:05.120][self$getEntryFields()$define] Define field catalytic.activity.
biodb.DEBUG[2023-11-02 08:46:05.122][self$getEntryFields()$define] Define field cofactor.
biodb.DEBUG[2023-11-02 08:46:05.124][self$getEntryFields()$define] Define field gene.symbol.
biodb.DEBUG[2023-11-02 08:46:05.126][self$getEntryFields()$define] Define field charge.
biodb.DEBUG[2023-11-02 08:46:05.128][self$getEntryFields()$define] Define field comp.iupac.name.allowed.
biodb.DEBUG[2023-11-02 08:46:05.130][self$getEntryFields()$define] Define field comp.iupac.name.cas.
biodb.DEBUG[2023-11-02 08:46:05.132][self$getEntryFields()$define] Define field comp.iupac.name.pref.
biodb.DEBUG[2023-11-02 08:46:05.134][self$getEntryFields()$define] Define field comp.iupac.name.syst.
biodb.DEBUG[2023-11-02 08:46:05.136][self$getEntryFields()$define] Define field comp.iupac.name.trad.
biodb.DEBUG[2023-11-02 08:46:05.138][self$getEntryFields()$define] Define field comp.super.class.
biodb.DEBUG[2023-11-02 08:46:05.140][self$getEntryFields()$define] Define field equation.
biodb.DEBUG[2023-11-02 08:46:05.142][self$getEntryFields()$define] Define field formula.
biodb.DEBUG[2023-11-02 08:46:05.144][self$getEntryFields()$define] Define field composition.
biodb.DEBUG[2023-11-02 08:46:05.146][self$getEntryFields()$define] Define field inchi.
biodb.DEBUG[2023-11-02 08:46:05.148][self$getEntryFields()$define] Define field inchikey.
biodb.DEBUG[2023-11-02 08:46:05.157][self$getEntryFields()$define] Define field logp.
biodb.DEBUG[2023-11-02 08:46:05.160][self$getEntryFields()$define] Define field ms.level.
biodb.DEBUG[2023-11-02 08:46:05.162][self$getEntryFields()$define] Define field ms.mode.
biodb.DEBUG[2023-11-02 08:46:05.164][self$getEntryFields()$define] Define field msdev.
biodb.DEBUG[2023-11-02 08:46:05.166][self$getEntryFields()$define] Define field msdevtype.
biodb.DEBUG[2023-11-02 08:46:05.168][self$getEntryFields()$define] Define field msprecannot.
biodb.DEBUG[2023-11-02 08:46:05.170][self$getEntryFields()$define] Define field msprecmz.
biodb.DEBUG[2023-11-02 08:46:05.171][self$getEntryFields()$define] Define field mstype.
biodb.DEBUG[2023-11-02 08:46:05.173][self$getEntryFields()$define] Define field nb.compounds.
biodb.DEBUG[2023-11-02 08:46:05.175][self$getEntryFields()$define] Define field nb.peaks.
biodb.DEBUG[2023-11-02 08:46:05.177][self$getEntryFields()$define] Define field products.
biodb.DEBUG[2023-11-02 08:46:05.179][self$getEntryFields()$define] Define field smiles.
biodb.DEBUG[2023-11-02 08:46:05.181][self$getEntryFields()$define] Define field smiles.canonical.
biodb.DEBUG[2023-11-02 08:46:05.183][self$getEntryFields()$define] Define field smiles.isomeric.
biodb.DEBUG[2023-11-02 08:46:05.185][self$getEntryFields()$define] Define field substrates.
biodb.DEBUG[2023-11-02 08:46:05.187][initialize] Created successfully new BiodbMain instance.
biodb.DEBUG[2023-11-02 08:46:05.189][initialize] This is biodb version 1.10.0.
biodb.DEBUG[2023-11-02 08:46:05.191][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2023-11-02 08:46:05.192][FUN] Trying to call function notifyNewObservers on observer BiodbEntryFields.
biodb.DEBUG[2023-11-02 08:46:05.193][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-11-02 08:46:05.194][FUN] Trying to call function notifyNewObservers on observer BiodbConfig.
biodb.DEBUG[2023-11-02 08:46:05.196][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-11-02 08:46:05.197][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-11-02 08:46:05.198][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2023-11-02 08:46:05.199][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-11-02 08:46:05.201][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2023-11-02 08:46:05.202][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-11-02 08:46:05.203][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-11-02 08:46:05.204][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-11-02 08:46:05.206][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-11-02 08:46:05.207][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2023-11-02 08:46:05.208][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-11-02 08:46:05.209][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2023-11-02 08:46:05.211][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-11-02 08:46:05.212][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-11-02 08:46:05.213][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-11-02 08:46:05.214][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-11-02 08:46:05.215][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2023-11-02 08:46:05.217][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-11-02 08:46:05.218][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2023-11-02 08:46:05.219][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-11-02 08:46:05.220][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-11-02 08:46:05.222][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-11-02 08:46:05.223][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-11-02 08:46:05.224][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2023-11-02 08:46:05.225][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-11-02 08:46:05.226][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2023-11-02 08:46:05.228][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-11-02 08:46:05.229][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-11-02 08:46:05.230][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-11-02 08:46:05.231][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-11-02 08:46:05.233][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2023-11-02 08:46:05.234][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-11-02 08:46:05.235][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2023-11-02 08:46:05.236][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-11-02 08:46:05.238][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-11-02 08:46:05.239][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-11-02 08:46:05.240][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-11-02 08:46:05.241][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2023-11-02 08:46:05.242][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-11-02 08:46:05.244][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2023-11-02 08:46:05.246][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-11-02 08:46:05.247][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-11-02 08:46:05.249][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-11-02 08:46:05.250][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-11-02 08:46:05.251][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2023-11-02 08:46:05.253][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-11-02 08:46:05.254][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2023-11-02 08:46:05.256][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-11-02 08:46:05.257][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-11-02 08:46:05.258][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-11-02 08:46:05.260][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-11-02 08:46:05.261][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2023-11-02 08:46:05.262][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-11-02 08:46:05.264][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2023-11-02 08:46:05.265][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-11-02 08:46:05.266][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-11-02 08:46:05.268][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-11-02 08:46:05.269][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-11-02 08:46:05.270][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2023-11-02 08:46:05.272][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-11-02 08:46:05.273][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2023-11-02 08:46:05.274][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-11-02 08:46:05.276][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-11-02 08:46:05.277][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-11-02 08:46:05.278][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-11-02 08:46:05.280][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2023-11-02 08:46:05.281][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-11-02 08:46:05.282][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2023-11-02 08:46:05.284][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-11-02 08:46:05.285][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-11-02 08:46:05.286][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-11-02 08:46:05.288][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-11-02 08:46:05.297][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2023-11-02 08:46:05.298][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-11-02 08:46:05.300][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2023-11-02 08:46:05.301][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-11-02 08:46:05.302][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-11-02 08:46:05.304][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-11-02 08:46:05.305][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-11-02 08:46:05.306][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2023-11-02 08:46:05.307][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-11-02 08:46:05.309][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2023-11-02 08:46:05.310][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-11-02 08:46:05.311][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-11-02 08:46:05.313][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-11-02 08:46:05.314][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-11-02 08:46:05.315][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2023-11-02 08:46:05.316][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-11-02 08:46:05.318][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2023-11-02 08:46:05.319][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-11-02 08:46:05.320][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-11-02 08:46:05.322][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-11-02 08:46:05.323][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-11-02 08:46:05.324][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2023-11-02 08:46:05.326][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-11-02 08:46:05.327][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2023-11-02 08:46:05.328][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-11-02 08:46:05.329][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-11-02 08:46:05.331][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-11-02 08:46:05.332][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-11-02 08:46:05.333][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2023-11-02 08:46:05.335][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-11-02 08:46:05.336][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2023-11-02 08:46:05.337][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-11-02 08:46:05.339][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-11-02 08:46:05.340][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-11-02 08:46:05.341][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-11-02 08:46:05.343][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2023-11-02 08:46:05.344][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-11-02 08:46:05.345][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2023-11-02 08:46:05.346][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-11-02 08:46:05.348][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-11-02 08:46:05.349][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-11-02 08:46:05.350][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-11-02 08:46:05.352][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2023-11-02 08:46:05.353][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-11-02 08:46:05.354][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2023-11-02 08:46:05.356][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-11-02 08:46:05.357][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-11-02 08:46:05.358][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-11-02 08:46:05.360][biodb$loadDefinitions] Load definitions from file "/home/biocbuild/R/R-4.3.1/site-library/biodbHmdb/definitions.yml".
biodb.DEBUG[2023-11-02 08:46:05.362][self$getDbsInfo()$define] Define connector hmdb.metabolites.
biodb.DEBUG[2023-11-02 08:46:05.365][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2023-11-02 08:46:05.367][self$setPropertyValue] Setting property "description" to "NA".
biodb.DEBUG[2023-11-02 08:46:05.368][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2023-11-02 08:46:05.369][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2023-11-02 08:46:05.371][self$setPropertyValue] Setting property "downloadable" to "TRUE".
biodb.DEBUG[2023-11-02 08:46:05.372][self$setPropertyValue] Setting property "dwnld.ext" to "zip".
biodb.DEBUG[2023-11-02 08:46:05.374][self$setPropertyValue] Setting property "editable" to "FALSE".
biodb.DEBUG[2023-11-02 08:46:05.375][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2023-11-02 08:46:05.377][self$setPropertyValue] Setting property "entry.content.type" to "xml".
biodb.DEBUG[2023-11-02 08:46:05.379][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2023-11-02 08:46:05.380][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2023-11-02 08:46:05.382][self$setPropertyValue] Setting property "name" to "HMDB Metabolites".
biodb.DEBUG[2023-11-02 08:46:05.383][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2023-11-02 08:46:05.385][self$setPropertyValue] Setting property "parsing.expr" to "/metabolite/accession".
biodb.DEBUG[2023-11-02 08:46:05.385][self$setPropertyValue] Setting property "parsing.expr" to "/metabolite/secondary_accessions/accession".
biodb.DEBUG[2023-11-02 08:46:05.385][self$setPropertyValue] Setting property "parsing.expr" to "//average_molecular_weight".
biodb.DEBUG[2023-11-02 08:46:05.385][self$setPropertyValue] Setting property "parsing.expr" to "//cas_registry_number".
biodb.DEBUG[2023-11-02 08:46:05.385][self$setPropertyValue] Setting property "parsing.expr" to "//chebi_id".
biodb.DEBUG[2023-11-02 08:46:05.385][self$setPropertyValue] Setting property "parsing.expr" to "//chemspider_id".
biodb.DEBUG[2023-11-02 08:46:05.385][self$setPropertyValue] Setting property "parsing.expr" to "//kegg_id".
biodb.DEBUG[2023-11-02 08:46:05.385][self$setPropertyValue] Setting property "parsing.expr" to "//pubchem_compound_id".
biodb.DEBUG[2023-11-02 08:46:05.385][self$setPropertyValue] Setting property "parsing.expr" to "//iupac_name".
biodb.DEBUG[2023-11-02 08:46:05.385][self$setPropertyValue] Setting property "parsing.expr" to "//traditional_iupac".
biodb.DEBUG[2023-11-02 08:46:05.385][self$setPropertyValue] Setting property "parsing.expr" to "/metabolite/chemical_formula".
biodb.DEBUG[2023-11-02 08:46:05.385][self$setPropertyValue] Setting property "parsing.expr" to "//inchi".
biodb.DEBUG[2023-11-02 08:46:05.385][self$setPropertyValue] Setting property "parsing.expr" to "//inchikey".
biodb.DEBUG[2023-11-02 08:46:05.385][self$setPropertyValue] Setting property "parsing.expr" to "//monisotopic_molecular_weight".
biodb.DEBUG[2023-11-02 08:46:05.385][self$setPropertyValue] Setting property "parsing.expr" to "/metabolite/name".
biodb.DEBUG[2023-11-02 08:46:05.385][self$setPropertyValue] Setting property "parsing.expr" to "/metabolite/description".
biodb.DEBUG[2023-11-02 08:46:05.385][self$setPropertyValue] Setting property "parsing.expr" to "//smiles".
biodb.DEBUG[2023-11-02 08:46:05.385][self$setPropertyValue] Setting property "parsing.expr" to "//super_class".
biodb.DEBUG[2023-11-02 08:46:05.387][self$setPropertyValue] Setting property "remote" to "TRUE".
biodb.DEBUG[2023-11-02 08:46:05.388][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2023-11-02 08:46:05.388][self$setPropertyValue] Setting property "searchable.fields" to "description".
biodb.DEBUG[2023-11-02 08:46:05.388][self$setPropertyValue] Setting property "searchable.fields" to "secondary.accessions".
biodb.DEBUG[2023-11-02 08:46:05.390][self$setPropertyValue] Setting property "scheduler.n" to "3".
biodb.DEBUG[2023-11-02 08:46:05.391][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2023-11-02 08:46:05.392][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2023-11-02 08:46:05.394][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2023-11-02 08:46:05.395][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2023-11-02 08:46:05.397][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2023-11-02 08:46:05.398][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2023-11-02 08:46:05.399][self$setPropertyValue] Setting property "urls" to "http://www.hmdb.ca/".
biodb.DEBUG[2023-11-02 08:46:05.399][self$setPropertyValue] Setting property "urls" to "http://www.hmdb.ca/system/downloads/current/hmdb_metabolites.zip".
biodb.DEBUG[2023-11-02 08:46:05.401][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2023-11-02 08:46:05.402][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2023-11-02 08:46:05.404][self$setPropertyValue] Setting property "writable" to "FALSE".
biodb.DEBUG[2023-11-02 08:46:05.405][self$setPropertyValue]
biodb.DEBUG[2023-11-02 08:46:05.407][self$getEntryFields()$define] Define field secondary_accessions.
biodb.DEBUG[2023-11-02 08:46:05.409][self$getEntryFields()$define] Define field chemspider.id.
biodb.DEBUG[2023-11-02 08:46:05.411][self$getEntryFields()$define] Define field hmdb.metabolites.id.
biodb.DEBUG[2023-11-02 08:46:05.414][self$getEntryFields()$define] Define field kegg.compound.id.
biodb.DEBUG[2023-11-02 08:46:05.416][self$getEntryFields()$define] Define field ncbi.pubchem.comp.id.
biodb.DEBUG[2023-11-02 08:46:05.421][initialize] Initialize connector hmdb.metabolites.
biodb.DEBUG[2023-11-02 08:46:05.422][initialize] Register connector hmdb.metabolites with the request scheduler
biodb.DEBUG[2023-11-02 08:46:05.424][private$bdb$getRequestScheduler()$re ...] Register connector hmdb.metabolites.
biodb.DEBUG[2023-11-02 08:46:05.426][private$addConnectorRules] Create new rule for URL "www.hmdb.ca" of connector "hmdb.metabolites".
biodb.DEBUG[2023-11-02 08:46:05.428][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2023-11-02 08:46:05.429][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2023-11-02 08:46:05.439][rule$addConnector] Connector "hmdb.metabolites" is already listed in rule "www.hmdb.ca".
biodb.DEBUG[2023-11-02 08:46:05.441][biodb$getFactory()$createConn] Creating new connector hmdb.metabolites for database class hmdb.metabolites .
biodb.DEBUG[2023-11-02 08:46:05.442][self$setPropertyValue] Setting property "urls" to "http://www.hmdb.ca/".
biodb.DEBUG[2023-11-02 08:46:05.442][self$setPropertyValue] Setting property "urls" to "/home/biocbuild/R/R-4.3.1/site-library/biodbHmdb/extdata/generated/hmdb_extract.zip".
biodb.DEBUG[2023-11-02 08:46:05.444][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2023-11-02 08:46:05.445][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2023-11-02 08:46:05.447][FUN] Trying to call function notifyConnUrlsUpdated on observer BiodbRequestScheduler.
biodb.DEBUG[2023-11-02 08:46:05.448][FUN] Functions in observer BiodbRequestScheduler: [15]: ".__enclos_env__, clone, getAllRules, unregisterConnector, registerConnector, getConnectorRules, findRule, getUrl, getUrlString, notifyConnSchedulerFrequencyUpdated, notifyConnUrlsUpdated, downloadFile, sendRequest, sendSoapRequest, initialize".
biodb.DEBUG[2023-11-02 08:46:05.450][self$registerConnector] Register connector hmdb.metabolites.
biodb.DEBUG[2023-11-02 08:46:05.452][private$addConnectorRules] Create new rule for URL "www.hmdb.ca" of connector "hmdb.metabolites".
biodb.DEBUG[2023-11-02 08:46:05.453][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2023-11-02 08:46:05.455][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2023-11-02 08:46:05.457][private$addConnectorRules] Create new rule for URL "/home/biocbuild/R/R-4.3.1/site-library/biodbHmdb/extdata/generated/hmdb_extract.zip" of connector "hmdb.metabolites".
biodb.DEBUG[2023-11-02 08:46:05.458][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2023-11-02 08:46:05.460][self$setFrequency] t=1.000000, n=3.000000
biodb.INFO [2023-11-02 08:46:05.462][biodb::testThat]
biodb.INFO [2023-11-02 08:46:05.463][biodb::testThat] Running test function test.hmdbmetabolite.nbentries (" HMDB metabolite returns enough entries. ").
biodb.INFO [2023-11-02 08:46:05.465][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2023-11-02 08:46:05.466][biodb::testThat]
biodb.DEBUG[2023-11-02 08:46:05.472][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2023-11-02 08:46:05.474][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2023-11-02 08:46:05.476][private$doGetEntryIds] .doGetEntryIds 10
biodb.DEBUG[2023-11-02 08:46:05.478][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2023-11-02 08:46:05.479][private$doGetEntryIds] .doGetEntryIds 11
biodb.DEBUG[2023-11-02 08:46:05.481][private$doListFiles] List files in /home/biocbuild/.cache/R/biodb/hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34 using pattern ^.*\.xml$.
biodb.DEBUG[2023-11-02 08:46:05.483][cch$listFiles] Extracting accession number from file names associated with hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34 using pattern ^(.*)\.xml$
biodb.DEBUG[2023-11-02 08:46:05.484][cch$listFiles] files = HMDB0000001.xml, HMDB0000002.xml
biodb.DEBUG[2023-11-02 08:46:05.486][private$doGetEntryIds] COUNT IDS = 2
biodb.DEBUG[2023-11-02 08:46:05.490][conn$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.INFO [2023-11-02 08:46:05.499][biodb::testThat]
biodb.INFO [2023-11-02 08:46:05.501][biodb::testThat] Running test function test.old.accession (" We can retrieve entries using old accession numbers. ").
biodb.INFO [2023-11-02 08:46:05.502][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2023-11-02 08:46:05.503][biodb::testThat]
biodb.DEBUG[2023-11-02 08:46:05.506][private$loadEntries] Creating entries from ids [1]: "HMDB0000002".
biodb.DEBUG[2023-11-02 08:46:05.508][conn$getEntryContent] Get HMDB Metabolites entry content(s) for 1 id(s)...
biodb.DEBUG[2023-11-02 08:46:05.510][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2023-11-02 08:46:05.512][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.TRACE[2023-11-02 08:46:05.515][cch$loadFileContent] Trying to load 1 files from cache: [1]: "HMDB0000002".
biodb.TRACE[2023-11-02 08:46:05.517][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2023-11-02 08:46:05.519][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/.cache/R/biodb/hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34/HMDB0000002.xml".
biodb.DEBUG[2023-11-02 08:46:05.521][conn$getEntryContent] 1 HMDB Metabolites entry content(s) loaded from cache.
biodb.DEBUG[2023-11-02 08:46:05.522][self$createEntryFromContent] Creating HMDB Metabolites entries from 1 content(s).
biodb.DEBUG[2023-11-02 08:46:05.524][self$createEntryFromContent] Parsing 1 HMDB Metabolites entries.
biodb.DEBUG[2023-11-02 08:46:05.526][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-11-02 08:46:05.528][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-11-02 08:46:05.529][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-11-02 08:46:05.538][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-11-02 08:46:05.540][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-11-02 08:46:05.541][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-11-02 08:46:05.543][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-11-02 08:46:05.547][ef$get] Asked field names are: accession.
biodb.TRACE[2023-11-02 08:46:05.549][ef$get] Realnames of fields are: accession.
biodb.TRACE[2023-11-02 08:46:05.550][ef$get] 1 fields were returned.
biodb.TRACE[2023-11-02 08:46:05.551][ef$get] fields variable is a list.
biodb.TRACE[2023-11-02 08:46:05.553][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-11-02 08:46:05.555][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-11-02 08:46:05.556][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-11-02 08:46:05.557][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-11-02 08:46:05.559][ef$get] Asked field names are: secondary.accessions.
biodb.TRACE[2023-11-02 08:46:05.560][ef$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2023-11-02 08:46:05.562][ef$get] 1 fields were returned.
biodb.TRACE[2023-11-02 08:46:05.563][ef$get] fields variable is a list.
biodb.TRACE[2023-11-02 08:46:05.565][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2023-11-02 08:46:05.566][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2023-11-02 08:46:05.568][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-11-02 08:46:05.569][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-11-02 08:46:05.571][ef$get] Asked field names are: average.mass.
biodb.TRACE[2023-11-02 08:46:05.572][ef$get] Realnames of fields are: average.mass.
biodb.TRACE[2023-11-02 08:46:05.573][ef$get] 1 fields were returned.
biodb.TRACE[2023-11-02 08:46:05.575][ef$get] fields variable is a list.
biodb.TRACE[2023-11-02 08:46:05.577][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2023-11-02 08:46:05.578][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2023-11-02 08:46:05.588][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-11-02 08:46:05.589][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-11-02 08:46:05.591][ef$get] Asked field names are: cas.id.
biodb.TRACE[2023-11-02 08:46:05.592][ef$get] Realnames of fields are: cas.id.
biodb.TRACE[2023-11-02 08:46:05.594][ef$get] 1 fields were returned.
biodb.TRACE[2023-11-02 08:46:05.595][ef$get] fields variable is a list.
biodb.TRACE[2023-11-02 08:46:05.597][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2023-11-02 08:46:05.598][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2023-11-02 08:46:05.599][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-11-02 08:46:05.601][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-11-02 08:46:05.602][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2023-11-02 08:46:05.603][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-11-02 08:46:05.605][ef$get] 1 fields were returned.
biodb.TRACE[2023-11-02 08:46:05.606][ef$get] fields variable is a list.
biodb.TRACE[2023-11-02 08:46:05.608][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-11-02 08:46:05.609][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-11-02 08:46:05.611][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-11-02 08:46:05.612][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-11-02 08:46:05.613][ef$get] Asked field names are: chemspider.id.
biodb.TRACE[2023-11-02 08:46:05.615][ef$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2023-11-02 08:46:05.616][ef$get] 1 fields were returned.
biodb.TRACE[2023-11-02 08:46:05.617][ef$get] fields variable is a list.
biodb.TRACE[2023-11-02 08:46:05.619][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2023-11-02 08:46:05.621][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2023-11-02 08:46:05.622][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-11-02 08:46:05.623][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-11-02 08:46:05.625][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2023-11-02 08:46:05.626][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2023-11-02 08:46:05.627][ef$get] 1 fields were returned.
biodb.TRACE[2023-11-02 08:46:05.629][ef$get] fields variable is a list.
biodb.TRACE[2023-11-02 08:46:05.631][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2023-11-02 08:46:05.632][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2023-11-02 08:46:05.633][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-11-02 08:46:05.635][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-11-02 08:46:05.636][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-11-02 08:46:05.638][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-11-02 08:46:05.639][ef$get] 1 fields were returned.
biodb.TRACE[2023-11-02 08:46:05.640][ef$get] fields variable is a list.
biodb.TRACE[2023-11-02 08:46:05.642][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-11-02 08:46:05.644][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-11-02 08:46:05.645][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-11-02 08:46:05.646][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-11-02 08:46:05.648][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2023-11-02 08:46:05.649][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2023-11-02 08:46:05.651][ef$get] 1 fields were returned.
biodb.TRACE[2023-11-02 08:46:05.652][ef$get] fields variable is a list.
biodb.TRACE[2023-11-02 08:46:05.654][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2023-11-02 08:46:05.655][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2023-11-02 08:46:05.657][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-11-02 08:46:05.658][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-11-02 08:46:05.659][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2023-11-02 08:46:05.661][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2023-11-02 08:46:05.662][ef$get] 1 fields were returned.
biodb.TRACE[2023-11-02 08:46:05.663][ef$get] fields variable is a list.
biodb.TRACE[2023-11-02 08:46:05.665][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2023-11-02 08:46:05.667][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2023-11-02 08:46:05.668][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-11-02 08:46:05.669][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-11-02 08:46:05.671][ef$get] Asked field names are: formula.
biodb.TRACE[2023-11-02 08:46:05.672][ef$get] Realnames of fields are: formula.
biodb.TRACE[2023-11-02 08:46:05.674][ef$get] 1 fields were returned.
biodb.TRACE[2023-11-02 08:46:05.675][ef$get] fields variable is a list.
biodb.TRACE[2023-11-02 08:46:05.677][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2023-11-02 08:46:05.678][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2023-11-02 08:46:05.679][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-11-02 08:46:05.681][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-11-02 08:46:05.682][ef$get] Asked field names are: inchi.
biodb.TRACE[2023-11-02 08:46:05.684][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2023-11-02 08:46:05.685][ef$get] 1 fields were returned.
biodb.TRACE[2023-11-02 08:46:05.686][ef$get] fields variable is a list.
biodb.TRACE[2023-11-02 08:46:05.688][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2023-11-02 08:46:05.690][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2023-11-02 08:46:05.691][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-11-02 08:46:05.693][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-11-02 08:46:05.694][ef$get] Asked field names are: inchikey.
biodb.TRACE[2023-11-02 08:46:05.696][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-11-02 08:46:05.697][ef$get] 1 fields were returned.
biodb.TRACE[2023-11-02 08:46:05.698][ef$get] fields variable is a list.
biodb.TRACE[2023-11-02 08:46:05.700][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2023-11-02 08:46:05.702][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-11-02 08:46:05.703][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-11-02 08:46:05.705][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-11-02 08:46:05.706][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-11-02 08:46:05.708][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-11-02 08:46:05.709][ef$get] 1 fields were returned.
biodb.TRACE[2023-11-02 08:46:05.710][ef$get] fields variable is a list.
biodb.TRACE[2023-11-02 08:46:05.712][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-11-02 08:46:05.714][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-11-02 08:46:05.715][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-11-02 08:46:05.717][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-11-02 08:46:05.726][ef$get] Asked field names are: name.
biodb.TRACE[2023-11-02 08:46:05.728][ef$get] Realnames of fields are: name.
biodb.TRACE[2023-11-02 08:46:05.729][ef$get] 1 fields were returned.
biodb.TRACE[2023-11-02 08:46:05.731][ef$get] fields variable is a list.
biodb.TRACE[2023-11-02 08:46:05.732][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2023-11-02 08:46:05.734][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2023-11-02 08:46:05.735][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-11-02 08:46:05.736][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-11-02 08:46:05.738][ef$get] Asked field names are: description.
biodb.TRACE[2023-11-02 08:46:05.739][ef$get] Realnames of fields are: description.
biodb.TRACE[2023-11-02 08:46:05.741][ef$get] 1 fields were returned.
biodb.TRACE[2023-11-02 08:46:05.742][ef$get] fields variable is a list.
biodb.TRACE[2023-11-02 08:46:05.744][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2023-11-02 08:46:05.745][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2023-11-02 08:46:05.747][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-11-02 08:46:05.748][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-11-02 08:46:05.750][ef$get] Asked field names are: smiles.
biodb.TRACE[2023-11-02 08:46:05.751][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2023-11-02 08:46:05.752][ef$get] 1 fields were returned.
biodb.TRACE[2023-11-02 08:46:05.754][ef$get] fields variable is a list.
biodb.TRACE[2023-11-02 08:46:05.756][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2023-11-02 08:46:05.757][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2023-11-02 08:46:05.758][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-11-02 08:46:05.760][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-11-02 08:46:05.761][ef$get] Asked field names are: super.class.
biodb.TRACE[2023-11-02 08:46:05.763][ef$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2023-11-02 08:46:05.764][ef$get] 1 fields were returned.
biodb.TRACE[2023-11-02 08:46:05.766][ef$get] fields variable is a list.
biodb.TRACE[2023-11-02 08:46:05.768][self$getBiodb()$getEntryFields()$get] Asked field names are: super.class.
biodb.TRACE[2023-11-02 08:46:05.769][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2023-11-02 08:46:05.771][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-11-02 08:46:05.772][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-11-02 08:46:05.774][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-11-02 08:46:05.775][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-11-02 08:46:05.777][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-11-02 08:46:05.778][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-11-02 08:46:05.779][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-11-02 08:46:05.781][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-11-02 08:46:05.782][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-11-02 08:46:05.783][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-11-02 08:46:05.785][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-11-02 08:46:05.786][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-11-02 08:46:05.788][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-11-02 08:46:05.789][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-11-02 08:46:05.791][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2023-11-02 08:46:05.792][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2023-11-02 08:46:05.793][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-11-02 08:46:05.795][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-11-02 08:46:05.796][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2023-11-02 08:46:05.798][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2023-11-02 08:46:05.799][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-11-02 08:46:05.800][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-11-02 08:46:05.802][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2023-11-02 08:46:05.803][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2023-11-02 08:46:05.805][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-11-02 08:46:05.806][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-11-02 08:46:05.807][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2023-11-02 08:46:05.809][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2023-11-02 08:46:05.810][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-11-02 08:46:05.812][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-11-02 08:46:05.813][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2023-11-02 08:46:05.815][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2023-11-02 08:46:05.816][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-11-02 08:46:05.817][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-11-02 08:46:05.819][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2023-11-02 08:46:05.820][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2023-11-02 08:46:05.822][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-11-02 08:46:05.823][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-11-02 08:46:05.825][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-11-02 08:46:05.826][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-11-02 08:46:05.827][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-11-02 08:46:05.829][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-11-02 08:46:05.830][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-11-02 08:46:05.832][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-11-02 08:46:05.833][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-11-02 08:46:05.835][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-11-02 08:46:05.836][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-11-02 08:46:05.838][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-11-02 08:46:05.839][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-11-02 08:46:05.840][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-11-02 08:46:05.842][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2023-11-02 08:46:05.844][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2023-11-02 08:46:05.845][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-11-02 08:46:05.846][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-11-02 08:46:05.848][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2023-11-02 08:46:05.849][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2023-11-02 08:46:05.851][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-11-02 08:46:05.852][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-11-02 08:46:05.854][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2023-11-02 08:46:05.855][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2023-11-02 08:46:05.856][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-11-02 08:46:05.865][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-11-02 08:46:05.868][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2023-11-02 08:46:05.869][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2023-11-02 08:46:05.871][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-11-02 08:46:05.872][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-11-02 08:46:05.873][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2023-11-02 08:46:05.875][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2023-11-02 08:46:05.876][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-11-02 08:46:05.877][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-11-02 08:46:05.879][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2023-11-02 08:46:05.880][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2023-11-02 08:46:05.882][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-11-02 08:46:05.883][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-11-02 08:46:05.884][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2023-11-02 08:46:05.886][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2023-11-02 08:46:05.887][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-11-02 08:46:05.888][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-11-02 08:46:05.890][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2023-11-02 08:46:05.891][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2023-11-02 08:46:05.893][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-11-02 08:46:05.894][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-11-02 08:46:05.895][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2023-11-02 08:46:05.897][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2023-11-02 08:46:05.898][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-11-02 08:46:05.899][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-11-02 08:46:05.901][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.super.class.
biodb.TRACE[2023-11-02 08:46:05.902][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2023-11-02 08:46:05.904][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-11-02 08:46:05.905][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-11-02 08:46:05.906][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.super.class.
biodb.TRACE[2023-11-02 08:46:05.908][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2023-11-02 08:46:05.909][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-11-02 08:46:05.911][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-11-02 08:46:05.912][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.super.class.
biodb.TRACE[2023-11-02 08:46:05.914][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2023-11-02 08:46:05.915][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-11-02 08:46:05.916][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-11-02 08:46:05.918][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2023-11-02 08:46:05.919][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2023-11-02 08:46:05.920][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-11-02 08:46:05.922][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-11-02 08:46:05.923][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2023-11-02 08:46:05.925][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2023-11-02 08:46:05.926][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-11-02 08:46:05.927][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-11-02 08:46:05.929][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2023-11-02 08:46:05.930][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2023-11-02 08:46:05.932][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-11-02 08:46:05.933][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-11-02 08:46:05.934][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2023-11-02 08:46:05.936][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2023-11-02 08:46:05.937][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-11-02 08:46:05.939][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-11-02 08:46:05.940][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2023-11-02 08:46:05.941][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2023-11-02 08:46:05.943][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-11-02 08:46:05.944][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-11-02 08:46:05.945][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2023-11-02 08:46:05.947][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2023-11-02 08:46:05.948][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-11-02 08:46:05.950][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-11-02 08:46:05.951][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2023-11-02 08:46:05.953][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2023-11-02 08:46:05.954][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-11-02 08:46:05.955][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-11-02 08:46:05.957][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2023-11-02 08:46:05.958][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2023-11-02 08:46:05.959][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-11-02 08:46:05.961][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-11-02 08:46:05.962][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2023-11-02 08:46:05.964][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2023-11-02 08:46:05.965][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-11-02 08:46:05.966][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-11-02 08:46:05.968][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2023-11-02 08:46:05.969][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-11-02 08:46:05.971][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-11-02 08:46:05.972][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-11-02 08:46:05.973][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2023-11-02 08:46:05.975][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-11-02 08:46:05.976][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-11-02 08:46:05.978][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-11-02 08:46:05.979][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2023-11-02 08:46:05.981][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-11-02 08:46:05.982][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-11-02 08:46:05.983][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-11-02 08:46:05.985][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2023-11-02 08:46:05.986][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2023-11-02 08:46:05.988][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-11-02 08:46:05.989][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-11-02 08:46:05.991][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2023-11-02 08:46:05.992][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2023-11-02 08:46:05.993][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-11-02 08:46:06.002][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-11-02 08:46:06.004][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2023-11-02 08:46:06.006][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2023-11-02 08:46:06.007][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-11-02 08:46:06.009][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-11-02 08:46:06.010][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-11-02 08:46:06.012][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-11-02 08:46:06.013][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-11-02 08:46:06.014][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-11-02 08:46:06.016][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-11-02 08:46:06.017][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-11-02 08:46:06.019][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-11-02 08:46:06.020][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-11-02 08:46:06.021][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-11-02 08:46:06.023][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-11-02 08:46:06.024][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-11-02 08:46:06.025][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-11-02 08:46:06.027][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2023-11-02 08:46:06.028][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2023-11-02 08:46:06.030][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-11-02 08:46:06.031][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-11-02 08:46:06.033][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2023-11-02 08:46:06.034][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2023-11-02 08:46:06.036][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-11-02 08:46:06.037][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-11-02 08:46:06.038][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2023-11-02 08:46:06.040][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2023-11-02 08:46:06.041][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-11-02 08:46:06.043][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-11-02 08:46:06.044][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-11-02 08:46:06.046][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-11-02 08:46:06.047][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-11-02 08:46:06.049][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-11-02 08:46:06.050][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-11-02 08:46:06.052][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-11-02 08:46:06.053][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-11-02 08:46:06.055][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-11-02 08:46:06.056][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-11-02 08:46:06.058][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-11-02 08:46:06.059][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-11-02 08:46:06.060][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-11-02 08:46:06.062][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2023-11-02 08:46:06.063][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2023-11-02 08:46:06.065][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-11-02 08:46:06.066][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-11-02 08:46:06.068][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2023-11-02 08:46:06.069][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2023-11-02 08:46:06.071][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-11-02 08:46:06.072][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-11-02 08:46:06.073][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2023-11-02 08:46:06.075][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2023-11-02 08:46:06.076][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-11-02 08:46:06.078][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-11-02 08:46:06.079][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2023-11-02 08:46:06.081][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2023-11-02 08:46:06.082][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-11-02 08:46:06.083][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-11-02 08:46:06.085][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2023-11-02 08:46:06.086][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2023-11-02 08:46:06.088][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-11-02 08:46:06.089][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-11-02 08:46:06.090][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2023-11-02 08:46:06.092][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2023-11-02 08:46:06.093][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-11-02 08:46:06.095][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-11-02 08:46:06.096][self$getBiodb()$getEntryFields()$get] Asked field names are: INCHIKEY.
biodb.TRACE[2023-11-02 08:46:06.098][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-11-02 08:46:06.099][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-11-02 08:46:06.100][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-11-02 08:46:06.102][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2023-11-02 08:46:06.103][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-11-02 08:46:06.105][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-11-02 08:46:06.106][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-11-02 08:46:06.108][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2023-11-02 08:46:06.109][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-11-02 08:46:06.110][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-11-02 08:46:06.112][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-11-02 08:46:06.113][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2023-11-02 08:46:06.115][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-11-02 08:46:06.116][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-11-02 08:46:06.118][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-11-02 08:46:06.119][self$getBiodb()$getEntryFields()$get] Asked field names are: INCHIKEY.
biodb.TRACE[2023-11-02 08:46:06.121][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-11-02 08:46:06.122][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-11-02 08:46:06.123][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-11-02 08:46:06.126][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2023-11-02 08:46:06.128][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2023-11-02 08:46:06.129][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-11-02 08:46:06.130][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-11-02 08:46:06.132][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2023-11-02 08:46:06.133][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2023-11-02 08:46:06.143][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-11-02 08:46:06.144][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-11-02 08:46:06.146][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2023-11-02 08:46:06.148][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2023-11-02 08:46:06.149][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-11-02 08:46:06.150][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-11-02 08:46:06.151][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2023-11-02 08:46:06.153][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2023-11-02 08:46:06.154][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-11-02 08:46:06.155][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-11-02 08:46:06.157][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2023-11-02 08:46:06.158][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2023-11-02 08:46:06.160][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-11-02 08:46:06.161][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-11-02 08:46:06.162][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2023-11-02 08:46:06.164][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2023-11-02 08:46:06.165][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-11-02 08:46:06.167][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-11-02 08:46:06.168][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2023-11-02 08:46:06.169][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2023-11-02 08:46:06.171][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-11-02 08:46:06.172][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-11-02 08:46:06.174][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-11-02 08:46:06.175][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-11-02 08:46:06.176][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-11-02 08:46:06.178][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-11-02 08:46:06.179][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2023-11-02 08:46:06.181][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2023-11-02 08:46:06.182][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-11-02 08:46:06.183][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-11-02 08:46:06.185][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-11-02 08:46:06.186][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-11-02 08:46:06.187][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-11-02 08:46:06.189][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-11-02 08:46:06.190][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-11-02 08:46:06.192][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-11-02 08:46:06.193][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-11-02 08:46:06.194][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-11-02 08:46:06.196][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-11-02 08:46:06.197][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-11-02 08:46:06.199][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-11-02 08:46:06.200][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-11-02 08:46:06.201][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-11-02 08:46:06.203][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-11-02 08:46:06.204][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-11-02 08:46:06.206][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-11-02 08:46:06.207][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-11-02 08:46:06.208][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-11-02 08:46:06.210][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-11-02 08:46:06.211][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-11-02 08:46:06.213][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-11-02 08:46:06.214][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-11-02 08:46:06.215][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-11-02 08:46:06.217][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-11-02 08:46:06.218][self$createEntryFromContent] Accession numbers: HMDB0000002.
biodb.TRACE[2023-11-02 08:46:06.222][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-11-02 08:46:06.223][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-11-02 08:46:06.225][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-11-02 08:46:06.226][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-11-02 08:46:06.228][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-11-02 08:46:06.229][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-11-02 08:46:06.230][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-11-02 08:46:06.232][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-11-02 08:46:06.233][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-11-02 08:46:06.235][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-11-02 08:46:06.236][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-11-02 08:46:06.238][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.INFO [2023-11-02 08:46:06.246][biodb$terminate] Closing BiodbMain instance...
biodb.DEBUG[2023-11-02 08:46:06.248][private$conn[[conn]]$.__enclos_env__ ...] Unregister connector hmdb.metabolites from the request scheduler
biodb.INFO [2023-11-02 08:46:06.250][self$deleteConn] Connector "hmdb.metabolites" deleted.
biodb.DEBUG[2023-11-02 08:46:06.251][notifyObservers] Notify observers for terminate.
biodb.DEBUG[2023-11-02 08:46:06.252][FUN] Trying to call function terminate on observer BiodbTestMsgAck.
biodb.DEBUG[2023-11-02 08:46:06.254][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-11-02 08:46:06.255][FUN] Trying to call function terminate on observer BiodbEntryFields.
biodb.DEBUG[2023-11-02 08:46:06.256][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-11-02 08:46:06.258][FUN] Trying to call function terminate on observer BiodbConfig.
biodb.DEBUG[2023-11-02 08:46:06.259][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.INFO [2023-11-02 08:46:06.265][biodb::testContext]
biodb.INFO [2023-11-02 08:46:06.266][biodb::testContext] ********************************************************************************
biodb.INFO [2023-11-02 08:46:06.268][biodb::testContext] Test context - Test search of entries
biodb.INFO [2023-11-02 08:46:06.269][biodb::testContext] ********************************************************************************
biodb.INFO [2023-11-02 08:46:06.270][biodb::testContext]
biodb.INFO [2023-11-02 08:46:06.283][private$loadBiodbPkgsDefinitions] Loading definitions from package biodb version 1.10.0.
biodb.DEBUG[2023-11-02 08:46:06.286][self$loadDefinitions] Load definitions from file "/home/biocbuild/R/R-4.3.1/site-library/biodb/definitions.yml".
biodb.DEBUG[2023-11-02 08:46:06.290][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2023-11-02 08:46:06.292][self$getConfig()$define] Define config key allow.huge.downloads.
biodb.DEBUG[2023-11-02 08:46:06.293][self$set] Set key allow.huge.downloads to TRUE.
biodb.DEBUG[2023-11-02 08:46:06.295][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-11-02 08:46:06.296][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-11-02 08:46:06.297][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-11-02 08:46:06.298][self$getConfig()$define] Define config key autoload.extra.pkgs.
biodb.DEBUG[2023-11-02 08:46:06.300][self$set] Set key autoload.extra.pkgs to TRUE.
biodb.DEBUG[2023-11-02 08:46:06.301][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-11-02 08:46:06.302][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-11-02 08:46:06.304][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-11-02 08:46:06.305][self$getConfig()$define] Define config key cache.all.requests.
biodb.DEBUG[2023-11-02 08:46:06.307][self$set] Set key cache.all.requests to TRUE.
biodb.DEBUG[2023-11-02 08:46:06.308][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-11-02 08:46:06.309][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-11-02 08:46:06.310][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-11-02 08:46:06.312][self$getConfig()$define] Define config key cache.directory.
biodb.DEBUG[2023-11-02 08:46:06.313][self$getConfig()$define] Define config key cache.read.only.
biodb.DEBUG[2023-11-02 08:46:06.315][self$set] Set key cache.read.only to FALSE.
biodb.DEBUG[2023-11-02 08:46:06.316][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-11-02 08:46:06.317][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-11-02 08:46:06.318][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-11-02 08:46:06.320][self$getConfig()$define] Define config key cache.subfolders.
biodb.DEBUG[2023-11-02 08:46:06.321][self$getConfig()$define] Define config key cache.system.
biodb.DEBUG[2023-11-02 08:46:06.323][self$set] Set key cache.system to TRUE.
biodb.DEBUG[2023-11-02 08:46:06.324][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-11-02 08:46:06.325][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-11-02 08:46:06.327][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-11-02 08:46:06.328][self$getConfig()$define] Define config key use.cache.for.local.db.
biodb.DEBUG[2023-11-02 08:46:06.330][self$set] Set key use.cache.for.local.db to FALSE.
biodb.DEBUG[2023-11-02 08:46:06.331][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-11-02 08:46:06.332][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-11-02 08:46:06.333][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-11-02 08:46:06.335][self$getConfig()$define] Define config key dwnld.chunk.size.
biodb.DEBUG[2023-11-02 08:46:06.336][self$getConfig()$define] Define config key dwnld.timeout.
biodb.DEBUG[2023-11-02 08:46:06.338][self$set] Set key dwnld.timeout to 3600.
biodb.DEBUG[2023-11-02 08:46:06.339][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-11-02 08:46:06.340][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-11-02 08:46:06.342][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-11-02 08:46:06.343][self$getConfig()$define] Define config key compute.fields.
biodb.DEBUG[2023-11-02 08:46:06.345][self$set] Set key compute.fields to TRUE.
biodb.DEBUG[2023-11-02 08:46:06.346][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-11-02 08:46:06.347][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-11-02 08:46:06.349][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-11-02 08:46:06.350][self$getConfig()$define] Define config key factory.cache.
biodb.DEBUG[2023-11-02 08:46:06.352][self$getConfig()$define] Define config key force.locale.
biodb.DEBUG[2023-11-02 08:46:06.353][self$set] Set key force.locale to TRUE.
biodb.DEBUG[2023-11-02 08:46:06.355][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-11-02 08:46:06.356][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-11-02 08:46:06.357][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-11-02 08:46:06.359][self$getConfig()$define] Define config key longterm.cache.subfolder.
biodb.DEBUG[2023-11-02 08:46:06.360][self$getConfig()$define] Define config key msg.caution.lvl.
biodb.DEBUG[2023-11-02 08:46:06.362][self$getConfig()$define] Define config key msg.debug.lvl.
biodb.DEBUG[2023-11-02 08:46:06.363][self$getConfig()$define] Define config key msg.info.lvl.
biodb.DEBUG[2023-11-02 08:46:06.365][self$getConfig()$define] Define config key multival.field.sep.
biodb.DEBUG[2023-11-02 08:46:06.366][self$set] Set key multival.field.sep to ";".
biodb.DEBUG[2023-11-02 08:46:06.368][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-11-02 08:46:06.369][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-11-02 08:46:06.370][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-11-02 08:46:06.372][self$getConfig()$define] Define config key intra.field.name.sep.
biodb.DEBUG[2023-11-02 08:46:06.373][self$set] Set key intra.field.name.sep to ".".
biodb.DEBUG[2023-11-02 08:46:06.375][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-11-02 08:46:06.376][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-11-02 08:46:06.378][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-11-02 08:46:06.379][self$getConfig()$define] Define config key entries.sep.
biodb.DEBUG[2023-11-02 08:46:06.381][self$set] Set key entries.sep to "|".
biodb.DEBUG[2023-11-02 08:46:06.382][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-11-02 08:46:06.384][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-11-02 08:46:06.385][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-11-02 08:46:06.386][self$getConfig()$define] Define config key offline.
biodb.DEBUG[2023-11-02 08:46:06.388][self$set] Set key offline to FALSE.
biodb.DEBUG[2023-11-02 08:46:06.389][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-11-02 08:46:06.390][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-11-02 08:46:06.392][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-11-02 08:46:06.393][self$getConfig()$define] Define config key persistent.cache.impl.
biodb.DEBUG[2023-11-02 08:46:06.395][self$set] Set key persistent.cache.impl to "custom".
biodb.DEBUG[2023-11-02 08:46:06.396][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-11-02 08:46:06.397][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-11-02 08:46:06.399][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-11-02 08:46:06.400][self$getConfig()$define] Define config key proton.mass.
biodb.DEBUG[2023-11-02 08:46:06.402][self$set] Set key proton.mass to 1.0072765.
biodb.DEBUG[2023-11-02 08:46:06.403][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-11-02 08:46:06.404][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-11-02 08:46:06.406][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-11-02 08:46:06.407][self$getConfig()$define] Define config key shortterm.cache.subfolder.
biodb.DEBUG[2023-11-02 08:46:06.409][self$getConfig()$define] Define config key svn.binary.path.
biodb.DEBUG[2023-11-02 08:46:06.413][self$set] Set key svn.binary.path to "".
biodb.DEBUG[2023-11-02 08:46:06.415][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-11-02 08:46:06.416][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-11-02 08:46:06.417][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-11-02 08:46:06.419][self$getConfig()$define] Define config key test.functions.
biodb.DEBUG[2023-11-02 08:46:06.429][self$getConfig()$define] Define config key useragent.
biodb.DEBUG[2023-11-02 08:46:06.430][self$set] Set key useragent to "R Bioconductor biodb library.".
biodb.DEBUG[2023-11-02 08:46:06.432][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-11-02 08:46:06.433][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-11-02 08:46:06.434][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-11-02 08:46:06.436][self$getDbsInfo()$define] Define connector comp.csv.file.
biodb.DEBUG[2023-11-02 08:46:06.438][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2023-11-02 08:46:06.440][self$setPropertyValue] Setting property "description" to "A connector to handle a compound database stored inside a CSV file. It is possible to choose the separator for the CSV file, as well as match the column names with the biodb entry fields.".
biodb.DEBUG[2023-11-02 08:46:06.441][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2023-11-02 08:46:06.442][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2023-11-02 08:46:06.444][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2023-11-02 08:46:06.445][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2023-11-02 08:46:06.447][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2023-11-02 08:46:06.448][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2023-11-02 08:46:06.449][self$setPropertyValue] Setting property "entry.content.type" to "tsv".
biodb.DEBUG[2023-11-02 08:46:06.451][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2023-11-02 08:46:06.452][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2023-11-02 08:46:06.453][self$setPropertyValue] Setting property "name" to "Compound CSV File".
biodb.DEBUG[2023-11-02 08:46:06.455][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2023-11-02 08:46:06.456][self$setPropertyValue]
biodb.DEBUG[2023-11-02 08:46:06.458][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2023-11-02 08:46:06.459][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2023-11-02 08:46:06.459][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2023-11-02 08:46:06.459][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2023-11-02 08:46:06.459][self$setPropertyValue] Setting property "searchable.fields" to "average.mass".
biodb.DEBUG[2023-11-02 08:46:06.459][self$setPropertyValue] Setting property "searchable.fields" to "nominal.mass".
biodb.DEBUG[2023-11-02 08:46:06.460][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2023-11-02 08:46:06.462][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2023-11-02 08:46:06.463][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2023-11-02 08:46:06.464][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2023-11-02 08:46:06.466][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2023-11-02 08:46:06.467][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2023-11-02 08:46:06.468][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2023-11-02 08:46:06.470][self$setPropertyValue]
biodb.DEBUG[2023-11-02 08:46:06.471][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2023-11-02 08:46:06.472][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2023-11-02 08:46:06.474][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2023-11-02 08:46:06.475][self$setPropertyValue]
biodb.DEBUG[2023-11-02 08:46:06.477][self$getDbsInfo()$define] Define connector comp.sqlite.
biodb.DEBUG[2023-11-02 08:46:06.479][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2023-11-02 08:46:06.481][self$setPropertyValue] Setting property "description" to "A connector to handle a compound database stored inside an SQLite file.".
biodb.DEBUG[2023-11-02 08:46:06.482][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2023-11-02 08:46:06.483][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2023-11-02 08:46:06.485][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2023-11-02 08:46:06.486][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2023-11-02 08:46:06.488][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2023-11-02 08:46:06.489][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2023-11-02 08:46:06.490][self$setPropertyValue] Setting property "entry.content.type" to "list".
biodb.DEBUG[2023-11-02 08:46:06.492][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2023-11-02 08:46:06.493][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2023-11-02 08:46:06.495][self$setPropertyValue] Setting property "name" to "Compound SQLite".
biodb.DEBUG[2023-11-02 08:46:06.496][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2023-11-02 08:46:06.497][self$setPropertyValue]
biodb.DEBUG[2023-11-02 08:46:06.499][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2023-11-02 08:46:06.500][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2023-11-02 08:46:06.500][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2023-11-02 08:46:06.500][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2023-11-02 08:46:06.500][self$setPropertyValue] Setting property "searchable.fields" to "average.mass".
biodb.DEBUG[2023-11-02 08:46:06.500][self$setPropertyValue] Setting property "searchable.fields" to "nominal.mass".
biodb.DEBUG[2023-11-02 08:46:06.501][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2023-11-02 08:46:06.503][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2023-11-02 08:46:06.504][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2023-11-02 08:46:06.505][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2023-11-02 08:46:06.507][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2023-11-02 08:46:06.508][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2023-11-02 08:46:06.509][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2023-11-02 08:46:06.511][self$setPropertyValue]
biodb.DEBUG[2023-11-02 08:46:06.512][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2023-11-02 08:46:06.513][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2023-11-02 08:46:06.515][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2023-11-02 08:46:06.516][self$setPropertyValue]
biodb.DEBUG[2023-11-02 08:46:06.518][self$getDbsInfo()$define] Define connector mass.csv.file.
biodb.DEBUG[2023-11-02 08:46:06.520][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2023-11-02 08:46:06.522][self$setPropertyValue] Setting property "description" to "A connector to handle a mass spectra database stored inside a CSV file. It is possible to choose the separator for the CSV file, as well as match the column names with the biodb entry fields..".
biodb.DEBUG[2023-11-02 08:46:06.523][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2023-11-02 08:46:06.524][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2023-11-02 08:46:06.526][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2023-11-02 08:46:06.527][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2023-11-02 08:46:06.529][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2023-11-02 08:46:06.530][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2023-11-02 08:46:06.531][self$setPropertyValue] Setting property "entry.content.type" to "tsv".
biodb.DEBUG[2023-11-02 08:46:06.533][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2023-11-02 08:46:06.534][self$setPropertyValue] Setting property "mass.db" to "TRUE".
biodb.DEBUG[2023-11-02 08:46:06.536][self$setPropertyValue] Setting property "name" to "Mass spectra CSV File".
biodb.DEBUG[2023-11-02 08:46:06.537][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2023-11-02 08:46:06.538][self$setPropertyValue]
biodb.DEBUG[2023-11-02 08:46:06.540][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2023-11-02 08:46:06.541][self$setPropertyValue]
biodb.DEBUG[2023-11-02 08:46:06.543][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2023-11-02 08:46:06.544][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2023-11-02 08:46:06.545][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2023-11-02 08:46:06.547][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2023-11-02 08:46:06.548][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2023-11-02 08:46:06.549][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2023-11-02 08:46:06.551][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2023-11-02 08:46:06.552][self$setPropertyValue]
biodb.DEBUG[2023-11-02 08:46:06.561][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2023-11-02 08:46:06.563][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2023-11-02 08:46:06.564][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2023-11-02 08:46:06.565][self$setPropertyValue]
biodb.DEBUG[2023-11-02 08:46:06.567][self$getDbsInfo()$define] Define connector mass.sqlite.
biodb.DEBUG[2023-11-02 08:46:06.569][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2023-11-02 08:46:06.571][self$setPropertyValue] Setting property "description" to "A connector to handle a mass spectra database stored inside an SQLite file.".
biodb.DEBUG[2023-11-02 08:46:06.572][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2023-11-02 08:46:06.574][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2023-11-02 08:46:06.575][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2023-11-02 08:46:06.576][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2023-11-02 08:46:06.578][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2023-11-02 08:46:06.579][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2023-11-02 08:46:06.580][self$setPropertyValue] Setting property "entry.content.type" to "list".
biodb.DEBUG[2023-11-02 08:46:06.582][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2023-11-02 08:46:06.583][self$setPropertyValue] Setting property "mass.db" to "TRUE".
biodb.DEBUG[2023-11-02 08:46:06.584][self$setPropertyValue] Setting property "name" to "Mass spectra SQLite".
biodb.DEBUG[2023-11-02 08:46:06.586][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2023-11-02 08:46:06.587][self$setPropertyValue]
biodb.DEBUG[2023-11-02 08:46:06.592][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2023-11-02 08:46:06.594][self$setPropertyValue]
biodb.DEBUG[2023-11-02 08:46:06.595][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2023-11-02 08:46:06.597][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2023-11-02 08:46:06.598][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2023-11-02 08:46:06.599][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2023-11-02 08:46:06.600][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2023-11-02 08:46:06.602][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2023-11-02 08:46:06.603][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2023-11-02 08:46:06.604][self$setPropertyValue]
biodb.DEBUG[2023-11-02 08:46:06.606][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2023-11-02 08:46:06.607][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2023-11-02 08:46:06.608][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2023-11-02 08:46:06.610][self$setPropertyValue]
biodb.DEBUG[2023-11-02 08:46:06.612][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2023-11-02 08:46:06.613][FUN] Trying to call function notifyNewObservers on observer BiodbConfig.
biodb.DEBUG[2023-11-02 08:46:06.614][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-11-02 08:46:06.616][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-11-02 08:46:06.617][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2023-11-02 08:46:06.618][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-11-02 08:46:06.620][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-11-02 08:46:06.621][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-11-02 08:46:06.622][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-11-02 08:46:06.623][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2023-11-02 08:46:06.625][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-11-02 08:46:06.626][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-11-02 08:46:06.627][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-11-02 08:46:06.628][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-11-02 08:46:06.630][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2023-11-02 08:46:06.631][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-11-02 08:46:06.632][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-11-02 08:46:06.633][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-11-02 08:46:06.635][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-11-02 08:46:06.636][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2023-11-02 08:46:06.637][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-11-02 08:46:06.639][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-11-02 08:46:06.640][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-11-02 08:46:06.641][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-11-02 08:46:06.642][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2023-11-02 08:46:06.644][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-11-02 08:46:06.645][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-11-02 08:46:06.646][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-11-02 08:46:06.647][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-11-02 08:46:06.649][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2023-11-02 08:46:06.650][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-11-02 08:46:06.651][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-11-02 08:46:06.652][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-11-02 08:46:06.654][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-11-02 08:46:06.655][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2023-11-02 08:46:06.656][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-11-02 08:46:06.657][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-11-02 08:46:06.659][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-11-02 08:46:06.660][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-11-02 08:46:06.661][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2023-11-02 08:46:06.663][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-11-02 08:46:06.664][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-11-02 08:46:06.665][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-11-02 08:46:06.667][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-11-02 08:46:06.668][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2023-11-02 08:46:06.669][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-11-02 08:46:06.671][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-11-02 08:46:06.672][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-11-02 08:46:06.673][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-11-02 08:46:06.674][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2023-11-02 08:46:06.676][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-11-02 08:46:06.677][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-11-02 08:46:06.678][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-11-02 08:46:06.679][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-11-02 08:46:06.681][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2023-11-02 08:46:06.682][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-11-02 08:46:06.683][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-11-02 08:46:06.684][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-11-02 08:46:06.686][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-11-02 08:46:06.687][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2023-11-02 08:46:06.688][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-11-02 08:46:06.689][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-11-02 08:46:06.715][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-11-02 08:46:06.716][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-11-02 08:46:06.717][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2023-11-02 08:46:06.719][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-11-02 08:46:06.720][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-11-02 08:46:06.722][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-11-02 08:46:06.723][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-11-02 08:46:06.724][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2023-11-02 08:46:06.725][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-11-02 08:46:06.727][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-11-02 08:46:06.728][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-11-02 08:46:06.729][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-11-02 08:46:06.730][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2023-11-02 08:46:06.731][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-11-02 08:46:06.733][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-11-02 08:46:06.734][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-11-02 08:46:06.735][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-11-02 08:46:06.736][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2023-11-02 08:46:06.738][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-11-02 08:46:06.739][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-11-02 08:46:06.740][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-11-02 08:46:06.741][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-11-02 08:46:06.742][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2023-11-02 08:46:06.744][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-11-02 08:46:06.745][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-11-02 08:46:06.746][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-11-02 08:46:06.747][self$getEntryFields()$define] Define field accession.
biodb.DEBUG[2023-11-02 08:46:06.749][self$getEntryFields()$define] Define field description.
biodb.DEBUG[2023-11-02 08:46:06.751][self$getEntryFields()$define] Define field name.
biodb.DEBUG[2023-11-02 08:46:06.753][self$getEntryFields()$define] Define field cas.id.
biodb.DEBUG[2023-11-02 08:46:06.755][self$getEntryFields()$define] Define field chebi.id.
biodb.DEBUG[2023-11-02 08:46:06.757][self$getEntryFields()$define] Define field chemspider.id.
biodb.DEBUG[2023-11-02 08:46:06.759][self$getEntryFields()$define] Define field comp.csv.file.id.
biodb.DEBUG[2023-11-02 08:46:06.761][self$getEntryFields()$define] Define field comp.sqlite.id.
biodb.DEBUG[2023-11-02 08:46:06.763][self$getEntryFields()$define] Define field expasy.enzyme.id.
biodb.DEBUG[2023-11-02 08:46:06.765][self$getEntryFields()$define] Define field hmdb.metabolites.id.
biodb.DEBUG[2023-11-02 08:46:06.767][self$getEntryFields()$define] Define field kegg.compound.id.
biodb.DEBUG[2023-11-02 08:46:06.769][self$getEntryFields()$define] Define field kegg.genes.id.
biodb.DEBUG[2023-11-02 08:46:06.771][self$getEntryFields()$define] Define field mass.csv.file.id.
biodb.DEBUG[2023-11-02 08:46:06.773][self$getEntryFields()$define] Define field mass.sqlite.id.
biodb.DEBUG[2023-11-02 08:46:06.775][self$getEntryFields()$define] Define field ncbi.gene.id.
biodb.DEBUG[2023-11-02 08:46:06.777][self$getEntryFields()$define] Define field ncbi.pubchem.comp.id.
biodb.DEBUG[2023-11-02 08:46:06.778][self$getEntryFields()$define] Define field compound.id.
biodb.DEBUG[2023-11-02 08:46:06.780][self$getEntryFields()$define] Define field average.mass.
biodb.DEBUG[2023-11-02 08:46:06.782][self$getEntryFields()$define] Define field molecular.mass.
biodb.DEBUG[2023-11-02 08:46:06.784][self$getEntryFields()$define] Define field monoisotopic.mass.
biodb.DEBUG[2023-11-02 08:46:06.786][self$getEntryFields()$define] Define field nominal.mass.
biodb.DEBUG[2023-11-02 08:46:06.788][self$getEntryFields()$define] Define field peak.attr.
biodb.DEBUG[2023-11-02 08:46:06.790][self$getEntryFields()$define] Define field peak.comp.
biodb.DEBUG[2023-11-02 08:46:06.792][self$getEntryFields()$define] Define field peak.error.ppm.
biodb.DEBUG[2023-11-02 08:46:06.794][self$getEntryFields()$define] Define field peak.formula.
biodb.DEBUG[2023-11-02 08:46:06.796][self$getEntryFields()$define] Define field peak.intensity.
biodb.DEBUG[2023-11-02 08:46:06.798][self$getEntryFields()$define] Define field peak.mass.
biodb.DEBUG[2023-11-02 08:46:06.800][self$getEntryFields()$define] Define field peak.mztheo.
biodb.DEBUG[2023-11-02 08:46:06.802][self$getEntryFields()$define] Define field peak.mzexp.
biodb.DEBUG[2023-11-02 08:46:06.804][self$getEntryFields()$define] Define field peak.mz.
biodb.DEBUG[2023-11-02 08:46:06.806][self$getEntryFields()$define] Define field peak.relative.intensity.
biodb.DEBUG[2023-11-02 08:46:06.808][self$getEntryFields()$define] Define field peaks.
biodb.DEBUG[2023-11-02 08:46:06.810][self$getEntryFields()$define] Define field chrom.col.constructor.
biodb.DEBUG[2023-11-02 08:46:06.812][self$getEntryFields()$define] Define field chrom.col.diameter.
biodb.DEBUG[2023-11-02 08:46:06.814][self$getEntryFields()$define] Define field chrom.col.id.
biodb.DEBUG[2023-11-02 08:46:06.816][self$getEntryFields()$define] Define field chrom.col.length.
biodb.DEBUG[2023-11-02 08:46:06.818][self$getEntryFields()$define] Define field chrom.col.method.protocol.
biodb.DEBUG[2023-11-02 08:46:06.820][self$getEntryFields()$define] Define field chrom.col.name.
biodb.DEBUG[2023-11-02 08:46:06.822][self$getEntryFields()$define] Define field chrom.flow.gradient.
biodb.DEBUG[2023-11-02 08:46:06.824][self$getEntryFields()$define] Define field chrom.flow.rate.
biodb.DEBUG[2023-11-02 08:46:06.826][self$getEntryFields()$define] Define field chrom.rt.
biodb.DEBUG[2023-11-02 08:46:06.828][self$getEntryFields()$define] Define field chrom.rt.max.
biodb.DEBUG[2023-11-02 08:46:06.830][self$getEntryFields()$define] Define field chrom.rt.min.
biodb.DEBUG[2023-11-02 08:46:06.832][self$getEntryFields()$define] Define field chrom.rt.unit.
biodb.DEBUG[2023-11-02 08:46:06.834][self$getEntryFields()$define] Define field chrom.solvent.
biodb.DEBUG[2023-11-02 08:46:06.836][self$getEntryFields()$define] Define field aa.seq.
biodb.DEBUG[2023-11-02 08:46:06.838][self$getEntryFields()$define] Define field aa.seq.length.
biodb.DEBUG[2023-11-02 08:46:06.840][self$getEntryFields()$define] Define field aa.seq.location.
biodb.DEBUG[2023-11-02 08:46:06.842][self$getEntryFields()$define] Define field nt.seq.
biodb.DEBUG[2023-11-02 08:46:06.852][self$getEntryFields()$define] Define field nt.seq.length.
biodb.DEBUG[2023-11-02 08:46:06.854][self$getEntryFields()$define] Define field ec.
biodb.DEBUG[2023-11-02 08:46:06.856][self$getEntryFields()$define] Define field organism.
biodb.DEBUG[2023-11-02 08:46:06.859][self$getEntryFields()$define] Define field pathway.class.
biodb.DEBUG[2023-11-02 08:46:06.861][self$getEntryFields()$define] Define field catalytic.activity.
biodb.DEBUG[2023-11-02 08:46:06.863][self$getEntryFields()$define] Define field cofactor.
biodb.DEBUG[2023-11-02 08:46:06.865][self$getEntryFields()$define] Define field gene.symbol.
biodb.DEBUG[2023-11-02 08:46:06.867][self$getEntryFields()$define] Define field charge.
biodb.DEBUG[2023-11-02 08:46:06.869][self$getEntryFields()$define] Define field comp.iupac.name.allowed.
biodb.DEBUG[2023-11-02 08:46:06.871][self$getEntryFields()$define] Define field comp.iupac.name.cas.
biodb.DEBUG[2023-11-02 08:46:06.873][self$getEntryFields()$define] Define field comp.iupac.name.pref.
biodb.DEBUG[2023-11-02 08:46:06.875][self$getEntryFields()$define] Define field comp.iupac.name.syst.
biodb.DEBUG[2023-11-02 08:46:06.877][self$getEntryFields()$define] Define field comp.iupac.name.trad.
biodb.DEBUG[2023-11-02 08:46:06.879][self$getEntryFields()$define] Define field comp.super.class.
biodb.DEBUG[2023-11-02 08:46:06.881][self$getEntryFields()$define] Define field equation.
biodb.DEBUG[2023-11-02 08:46:06.883][self$getEntryFields()$define] Define field formula.
biodb.DEBUG[2023-11-02 08:46:06.885][self$getEntryFields()$define] Define field composition.
biodb.DEBUG[2023-11-02 08:46:06.887][self$getEntryFields()$define] Define field inchi.
biodb.DEBUG[2023-11-02 08:46:06.889][self$getEntryFields()$define] Define field inchikey.
biodb.DEBUG[2023-11-02 08:46:06.891][self$getEntryFields()$define] Define field logp.
biodb.DEBUG[2023-11-02 08:46:06.893][self$getEntryFields()$define] Define field ms.level.
biodb.DEBUG[2023-11-02 08:46:06.895][self$getEntryFields()$define] Define field ms.mode.
biodb.DEBUG[2023-11-02 08:46:06.897][self$getEntryFields()$define] Define field msdev.
biodb.DEBUG[2023-11-02 08:46:06.899][self$getEntryFields()$define] Define field msdevtype.
biodb.DEBUG[2023-11-02 08:46:06.901][self$getEntryFields()$define] Define field msprecannot.
biodb.DEBUG[2023-11-02 08:46:06.903][self$getEntryFields()$define] Define field msprecmz.
biodb.DEBUG[2023-11-02 08:46:06.906][self$getEntryFields()$define] Define field mstype.
biodb.DEBUG[2023-11-02 08:46:06.908][self$getEntryFields()$define] Define field nb.compounds.
biodb.DEBUG[2023-11-02 08:46:06.910][self$getEntryFields()$define] Define field nb.peaks.
biodb.DEBUG[2023-11-02 08:46:06.912][self$getEntryFields()$define] Define field products.
biodb.DEBUG[2023-11-02 08:46:06.914][self$getEntryFields()$define] Define field smiles.
biodb.DEBUG[2023-11-02 08:46:06.916][self$getEntryFields()$define] Define field smiles.canonical.
biodb.DEBUG[2023-11-02 08:46:06.918][self$getEntryFields()$define] Define field smiles.isomeric.
biodb.DEBUG[2023-11-02 08:46:06.920][self$getEntryFields()$define] Define field substrates.
biodb.DEBUG[2023-11-02 08:46:06.922][initialize] Created successfully new BiodbMain instance.
biodb.DEBUG[2023-11-02 08:46:06.924][initialize] This is biodb version 1.10.0.
biodb.DEBUG[2023-11-02 08:46:06.925][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2023-11-02 08:46:06.927][FUN] Trying to call function notifyNewObservers on observer BiodbEntryFields.
biodb.DEBUG[2023-11-02 08:46:06.928][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-11-02 08:46:06.929][FUN] Trying to call function notifyNewObservers on observer BiodbConfig.
biodb.DEBUG[2023-11-02 08:46:06.931][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-11-02 08:46:06.932][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-11-02 08:46:06.933][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2023-11-02 08:46:06.934][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-11-02 08:46:06.936][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2023-11-02 08:46:06.937][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-11-02 08:46:06.938][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-11-02 08:46:06.939][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-11-02 08:46:06.941][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-11-02 08:46:06.942][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2023-11-02 08:46:06.943][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-11-02 08:46:06.945][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2023-11-02 08:46:06.946][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-11-02 08:46:06.947][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-11-02 08:46:06.948][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-11-02 08:46:06.950][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-11-02 08:46:06.951][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2023-11-02 08:46:06.952][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-11-02 08:46:06.954][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2023-11-02 08:46:06.955][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-11-02 08:46:06.956][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-11-02 08:46:06.957][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-11-02 08:46:06.959][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-11-02 08:46:06.960][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2023-11-02 08:46:06.961][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-11-02 08:46:06.963][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2023-11-02 08:46:06.964][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-11-02 08:46:06.965][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-11-02 08:46:06.966][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-11-02 08:46:06.968][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-11-02 08:46:06.969][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2023-11-02 08:46:06.970][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-11-02 08:46:06.972][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2023-11-02 08:46:06.973][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-11-02 08:46:06.974][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-11-02 08:46:06.975][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-11-02 08:46:06.977][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-11-02 08:46:06.978][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2023-11-02 08:46:06.979][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-11-02 08:46:06.981][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2023-11-02 08:46:06.982][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-11-02 08:46:06.983][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-11-02 08:46:06.993][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-11-02 08:46:06.994][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-11-02 08:46:06.996][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2023-11-02 08:46:06.997][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-11-02 08:46:06.999][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2023-11-02 08:46:07.000][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-11-02 08:46:07.001][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-11-02 08:46:07.003][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-11-02 08:46:07.004][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-11-02 08:46:07.005][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2023-11-02 08:46:07.007][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-11-02 08:46:07.008][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2023-11-02 08:46:07.009][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-11-02 08:46:07.011][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-11-02 08:46:07.012][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-11-02 08:46:07.013][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-11-02 08:46:07.014][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2023-11-02 08:46:07.016][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-11-02 08:46:07.017][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2023-11-02 08:46:07.018][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-11-02 08:46:07.019][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-11-02 08:46:07.021][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-11-02 08:46:07.022][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-11-02 08:46:07.023][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2023-11-02 08:46:07.025][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-11-02 08:46:07.026][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2023-11-02 08:46:07.027][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-11-02 08:46:07.028][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-11-02 08:46:07.030][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-11-02 08:46:07.031][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-11-02 08:46:07.032][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2023-11-02 08:46:07.034][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-11-02 08:46:07.035][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2023-11-02 08:46:07.036][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-11-02 08:46:07.038][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-11-02 08:46:07.039][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-11-02 08:46:07.040][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-11-02 08:46:07.042][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2023-11-02 08:46:07.043][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-11-02 08:46:07.044][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2023-11-02 08:46:07.046][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-11-02 08:46:07.047][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-11-02 08:46:07.049][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-11-02 08:46:07.050][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-11-02 08:46:07.051][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2023-11-02 08:46:07.053][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-11-02 08:46:07.054][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2023-11-02 08:46:07.055][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-11-02 08:46:07.056][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-11-02 08:46:07.058][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-11-02 08:46:07.059][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-11-02 08:46:07.060][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2023-11-02 08:46:07.062][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-11-02 08:46:07.063][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2023-11-02 08:46:07.064][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-11-02 08:46:07.066][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-11-02 08:46:07.067][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-11-02 08:46:07.068][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-11-02 08:46:07.070][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2023-11-02 08:46:07.071][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-11-02 08:46:07.072][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2023-11-02 08:46:07.074][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-11-02 08:46:07.075][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-11-02 08:46:07.076][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-11-02 08:46:07.078][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-11-02 08:46:07.079][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2023-11-02 08:46:07.081][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-11-02 08:46:07.082][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2023-11-02 08:46:07.083][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-11-02 08:46:07.085][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-11-02 08:46:07.086][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-11-02 08:46:07.088][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-11-02 08:46:07.089][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2023-11-02 08:46:07.091][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-11-02 08:46:07.092][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2023-11-02 08:46:07.093][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-11-02 08:46:07.094][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-11-02 08:46:07.096][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-11-02 08:46:07.098][biodb$loadDefinitions] Load definitions from file "/home/biocbuild/R/R-4.3.1/site-library/biodbHmdb/definitions.yml".
biodb.DEBUG[2023-11-02 08:46:07.100][self$getDbsInfo()$define] Define connector hmdb.metabolites.
biodb.DEBUG[2023-11-02 08:46:07.103][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2023-11-02 08:46:07.104][self$setPropertyValue] Setting property "description" to "NA".
biodb.DEBUG[2023-11-02 08:46:07.106][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2023-11-02 08:46:07.107][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2023-11-02 08:46:07.109][self$setPropertyValue] Setting property "downloadable" to "TRUE".
biodb.DEBUG[2023-11-02 08:46:07.110][self$setPropertyValue] Setting property "dwnld.ext" to "zip".
biodb.DEBUG[2023-11-02 08:46:07.111][self$setPropertyValue] Setting property "editable" to "FALSE".
biodb.DEBUG[2023-11-02 08:46:07.113][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2023-11-02 08:46:07.114][self$setPropertyValue] Setting property "entry.content.type" to "xml".
biodb.DEBUG[2023-11-02 08:46:07.116][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2023-11-02 08:46:07.117][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2023-11-02 08:46:07.119][self$setPropertyValue] Setting property "name" to "HMDB Metabolites".
biodb.DEBUG[2023-11-02 08:46:07.120][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2023-11-02 08:46:07.122][self$setPropertyValue] Setting property "parsing.expr" to "/metabolite/accession".
biodb.DEBUG[2023-11-02 08:46:07.122][self$setPropertyValue] Setting property "parsing.expr" to "/metabolite/secondary_accessions/accession".
biodb.DEBUG[2023-11-02 08:46:07.122][self$setPropertyValue] Setting property "parsing.expr" to "//average_molecular_weight".
biodb.DEBUG[2023-11-02 08:46:07.122][self$setPropertyValue] Setting property "parsing.expr" to "//cas_registry_number".
biodb.DEBUG[2023-11-02 08:46:07.122][self$setPropertyValue] Setting property "parsing.expr" to "//chebi_id".
biodb.DEBUG[2023-11-02 08:46:07.122][self$setPropertyValue] Setting property "parsing.expr" to "//chemspider_id".
biodb.DEBUG[2023-11-02 08:46:07.122][self$setPropertyValue] Setting property "parsing.expr" to "//kegg_id".
biodb.DEBUG[2023-11-02 08:46:07.122][self$setPropertyValue] Setting property "parsing.expr" to "//pubchem_compound_id".
biodb.DEBUG[2023-11-02 08:46:07.122][self$setPropertyValue] Setting property "parsing.expr" to "//iupac_name".
biodb.DEBUG[2023-11-02 08:46:07.122][self$setPropertyValue] Setting property "parsing.expr" to "//traditional_iupac".
biodb.DEBUG[2023-11-02 08:46:07.122][self$setPropertyValue] Setting property "parsing.expr" to "/metabolite/chemical_formula".
biodb.DEBUG[2023-11-02 08:46:07.122][self$setPropertyValue] Setting property "parsing.expr" to "//inchi".
biodb.DEBUG[2023-11-02 08:46:07.122][self$setPropertyValue] Setting property "parsing.expr" to "//inchikey".
biodb.DEBUG[2023-11-02 08:46:07.122][self$setPropertyValue] Setting property "parsing.expr" to "//monisotopic_molecular_weight".
biodb.DEBUG[2023-11-02 08:46:07.122][self$setPropertyValue] Setting property "parsing.expr" to "/metabolite/name".
biodb.DEBUG[2023-11-02 08:46:07.122][self$setPropertyValue] Setting property "parsing.expr" to "/metabolite/description".
biodb.DEBUG[2023-11-02 08:46:07.122][self$setPropertyValue] Setting property "parsing.expr" to "//smiles".
biodb.DEBUG[2023-11-02 08:46:07.122][self$setPropertyValue] Setting property "parsing.expr" to "//super_class".
biodb.DEBUG[2023-11-02 08:46:07.123][self$setPropertyValue] Setting property "remote" to "TRUE".
biodb.DEBUG[2023-11-02 08:46:07.125][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2023-11-02 08:46:07.125][self$setPropertyValue] Setting property "searchable.fields" to "description".
biodb.DEBUG[2023-11-02 08:46:07.125][self$setPropertyValue] Setting property "searchable.fields" to "secondary.accessions".
biodb.DEBUG[2023-11-02 08:46:07.126][self$setPropertyValue] Setting property "scheduler.n" to "3".
biodb.DEBUG[2023-11-02 08:46:07.127][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2023-11-02 08:46:07.129][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2023-11-02 08:46:07.138][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2023-11-02 08:46:07.140][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2023-11-02 08:46:07.141][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2023-11-02 08:46:07.143][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2023-11-02 08:46:07.144][self$setPropertyValue] Setting property "urls" to "http://www.hmdb.ca/".
biodb.DEBUG[2023-11-02 08:46:07.144][self$setPropertyValue] Setting property "urls" to "http://www.hmdb.ca/system/downloads/current/hmdb_metabolites.zip".
biodb.DEBUG[2023-11-02 08:46:07.146][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2023-11-02 08:46:07.147][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2023-11-02 08:46:07.148][self$setPropertyValue] Setting property "writable" to "FALSE".
biodb.DEBUG[2023-11-02 08:46:07.150][self$setPropertyValue]
biodb.DEBUG[2023-11-02 08:46:07.151][self$getEntryFields()$define] Define field secondary_accessions.
biodb.DEBUG[2023-11-02 08:46:07.153][self$getEntryFields()$define] Define field chemspider.id.
biodb.DEBUG[2023-11-02 08:46:07.156][self$getEntryFields()$define] Define field hmdb.metabolites.id.
biodb.DEBUG[2023-11-02 08:46:07.158][self$getEntryFields()$define] Define field kegg.compound.id.
biodb.DEBUG[2023-11-02 08:46:07.160][self$getEntryFields()$define] Define field ncbi.pubchem.comp.id.
biodb.DEBUG[2023-11-02 08:46:07.164][initialize] Initialize connector hmdb.metabolites.
biodb.DEBUG[2023-11-02 08:46:07.165][initialize] Register connector hmdb.metabolites with the request scheduler
biodb.DEBUG[2023-11-02 08:46:07.167][private$bdb$getRequestScheduler()$re ...] Register connector hmdb.metabolites.
biodb.DEBUG[2023-11-02 08:46:07.169][private$addConnectorRules] Create new rule for URL "www.hmdb.ca" of connector "hmdb.metabolites".
biodb.DEBUG[2023-11-02 08:46:07.171][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2023-11-02 08:46:07.172][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2023-11-02 08:46:07.174][rule$addConnector] Connector "hmdb.metabolites" is already listed in rule "www.hmdb.ca".
biodb.DEBUG[2023-11-02 08:46:07.175][biodb$getFactory()$createConn] Creating new connector hmdb.metabolites for database class hmdb.metabolites .
biodb.DEBUG[2023-11-02 08:46:07.176][self$setPropertyValue] Setting property "urls" to "http://www.hmdb.ca/".
biodb.DEBUG[2023-11-02 08:46:07.176][self$setPropertyValue] Setting property "urls" to "/home/biocbuild/R/R-4.3.1/site-library/biodbHmdb/extdata/generated/hmdb_extract.zip".
biodb.DEBUG[2023-11-02 08:46:07.178][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2023-11-02 08:46:07.179][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2023-11-02 08:46:07.180][FUN] Trying to call function notifyConnUrlsUpdated on observer BiodbRequestScheduler.
biodb.DEBUG[2023-11-02 08:46:07.182][FUN] Functions in observer BiodbRequestScheduler: [15]: ".__enclos_env__, clone, getAllRules, unregisterConnector, registerConnector, getConnectorRules, findRule, getUrl, getUrlString, notifyConnSchedulerFrequencyUpdated, notifyConnUrlsUpdated, downloadFile, sendRequest, sendSoapRequest, initialize".
biodb.DEBUG[2023-11-02 08:46:07.183][self$registerConnector] Register connector hmdb.metabolites.
biodb.DEBUG[2023-11-02 08:46:07.186][private$addConnectorRules] Create new rule for URL "www.hmdb.ca" of connector "hmdb.metabolites".
biodb.DEBUG[2023-11-02 08:46:07.187][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2023-11-02 08:46:07.189][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2023-11-02 08:46:07.190][private$addConnectorRules] Create new rule for URL "/home/biocbuild/R/R-4.3.1/site-library/biodbHmdb/extdata/generated/hmdb_extract.zip" of connector "hmdb.metabolites".
biodb.DEBUG[2023-11-02 08:46:07.192][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2023-11-02 08:46:07.193][self$setFrequency] t=1.000000, n=3.000000
biodb.INFO [2023-11-02 08:46:07.195][biodb::testThat]
biodb.INFO [2023-11-02 08:46:07.197][biodb::testThat] Running test function test.searchMultipleWordsInDescription (" We can search for multiple words inside description field. ").
biodb.INFO [2023-11-02 08:46:07.198][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2023-11-02 08:46:07.199][biodb::testThat]
biodb.DEBUG[2023-11-02 08:46:07.202][private$doSearchForEntries] fields NAMES = description
biodb.DEBUG[2023-11-02 08:46:07.204][private$doSearchForEntries] fields VALUES = and
biodb.DEBUG[2023-11-02 08:46:07.205][private$doSearchForEntries] fields VALUES = and
biodb.DEBUG[2023-11-02 08:46:07.209][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2023-11-02 08:46:07.211][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2023-11-02 08:46:07.213][private$doGetEntryIds] .doGetEntryIds 10
biodb.DEBUG[2023-11-02 08:46:07.215][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2023-11-02 08:46:07.216][private$doGetEntryIds] .doGetEntryIds 11
biodb.DEBUG[2023-11-02 08:46:07.218][private$doListFiles] List files in /home/biocbuild/.cache/R/biodb/hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34 using pattern ^.*\.xml$.
biodb.DEBUG[2023-11-02 08:46:07.219][cch$listFiles] Extracting accession number from file names associated with hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34 using pattern ^(.*)\.xml$
biodb.DEBUG[2023-11-02 08:46:07.220][cch$listFiles] files = HMDB0000001.xml, HMDB0000002.xml
biodb.DEBUG[2023-11-02 08:46:07.222][private$doGetEntryIds] COUNT IDS = 2
biodb.DEBUG[2023-11-02 08:46:07.223][private$doSearchForEntries] All IDs = [2]: "HMDB0000001, HMDB0000002"
biodb.DEBUG[2023-11-02 08:46:07.224][private$doSearchForEntries] Total number of IDs = 2
biodb.DEBUG[2023-11-02 08:46:07.228][private$loadEntries] Creating entries from ids [1]: "HMDB0000001".
biodb.DEBUG[2023-11-02 08:46:07.229][conn$getEntryContent] Get HMDB Metabolites entry content(s) for 1 id(s)...
biodb.DEBUG[2023-11-02 08:46:07.231][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2023-11-02 08:46:07.233][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.TRACE[2023-11-02 08:46:07.236][cch$loadFileContent] Trying to load 1 files from cache: [1]: "HMDB0000001".
biodb.TRACE[2023-11-02 08:46:07.238][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2023-11-02 08:46:07.242][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/.cache/R/biodb/hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34/HMDB0000001.xml".
biodb.DEBUG[2023-11-02 08:46:07.243][conn$getEntryContent] 1 HMDB Metabolites entry content(s) loaded from cache.
biodb.DEBUG[2023-11-02 08:46:07.245][self$createEntryFromContent] Creating HMDB Metabolites entries from 1 content(s).
biodb.DEBUG[2023-11-02 08:46:07.247][self$createEntryFromContent] Parsing 1 HMDB Metabolites entries.
biodb.DEBUG[2023-11-02 08:46:07.249][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-11-02 08:46:07.250][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-11-02 08:46:07.251][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-11-02 08:46:07.260][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-11-02 08:46:07.261][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-11-02 08:46:07.262][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-11-02 08:46:07.264][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-11-02 08:46:07.269][ef$get] Asked field names are: accession.
biodb.TRACE[2023-11-02 08:46:07.271][ef$get] Realnames of fields are: accession.
biodb.TRACE[2023-11-02 08:46:07.272][ef$get] 1 fields were returned.
biodb.TRACE[2023-11-02 08:46:07.273][ef$get] fields variable is a list.
biodb.TRACE[2023-11-02 08:46:07.283][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-11-02 08:46:07.285][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-11-02 08:46:07.286][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-11-02 08:46:07.288][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-11-02 08:46:07.290][ef$get] Asked field names are: secondary.accessions.
biodb.TRACE[2023-11-02 08:46:07.291][ef$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2023-11-02 08:46:07.293][ef$get] 1 fields were returned.
biodb.TRACE[2023-11-02 08:46:07.294][ef$get] fields variable is a list.
biodb.TRACE[2023-11-02 08:46:07.296][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2023-11-02 08:46:07.297][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2023-11-02 08:46:07.299][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-11-02 08:46:07.300][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-11-02 08:46:07.301][ef$get] Asked field names are: average.mass.
biodb.TRACE[2023-11-02 08:46:07.303][ef$get] Realnames of fields are: average.mass.
biodb.TRACE[2023-11-02 08:46:07.304][ef$get] 1 fields were returned.
biodb.TRACE[2023-11-02 08:46:07.305][ef$get] fields variable is a list.
biodb.TRACE[2023-11-02 08:46:07.307][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2023-11-02 08:46:07.309][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2023-11-02 08:46:07.310][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-11-02 08:46:07.311][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-11-02 08:46:07.313][ef$get] Asked field names are: cas.id.
biodb.TRACE[2023-11-02 08:46:07.314][ef$get] Realnames of fields are: cas.id.
biodb.TRACE[2023-11-02 08:46:07.316][ef$get] 1 fields were returned.
biodb.TRACE[2023-11-02 08:46:07.317][ef$get] fields variable is a list.
biodb.TRACE[2023-11-02 08:46:07.319][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2023-11-02 08:46:07.320][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2023-11-02 08:46:07.322][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-11-02 08:46:07.323][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-11-02 08:46:07.325][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2023-11-02 08:46:07.326][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-11-02 08:46:07.327][ef$get] 1 fields were returned.
biodb.TRACE[2023-11-02 08:46:07.329][ef$get] fields variable is a list.
biodb.TRACE[2023-11-02 08:46:07.331][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-11-02 08:46:07.332][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-11-02 08:46:07.334][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-11-02 08:46:07.335][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-11-02 08:46:07.337][ef$get] Asked field names are: chemspider.id.
biodb.TRACE[2023-11-02 08:46:07.338][ef$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2023-11-02 08:46:07.339][ef$get] 1 fields were returned.
biodb.TRACE[2023-11-02 08:46:07.341][ef$get] fields variable is a list.
biodb.TRACE[2023-11-02 08:46:07.343][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2023-11-02 08:46:07.344][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2023-11-02 08:46:07.346][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-11-02 08:46:07.347][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-11-02 08:46:07.349][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2023-11-02 08:46:07.350][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2023-11-02 08:46:07.351][ef$get] 1 fields were returned.
biodb.TRACE[2023-11-02 08:46:07.353][ef$get] fields variable is a list.
biodb.TRACE[2023-11-02 08:46:07.355][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2023-11-02 08:46:07.356][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2023-11-02 08:46:07.358][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-11-02 08:46:07.359][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-11-02 08:46:07.361][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-11-02 08:46:07.362][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-11-02 08:46:07.363][ef$get] 1 fields were returned.
biodb.TRACE[2023-11-02 08:46:07.365][ef$get] fields variable is a list.
biodb.TRACE[2023-11-02 08:46:07.367][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-11-02 08:46:07.368][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-11-02 08:46:07.370][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-11-02 08:46:07.371][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-11-02 08:46:07.372][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2023-11-02 08:46:07.374][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2023-11-02 08:46:07.375][ef$get] 1 fields were returned.
biodb.TRACE[2023-11-02 08:46:07.377][ef$get] fields variable is a list.
biodb.TRACE[2023-11-02 08:46:07.378][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2023-11-02 08:46:07.380][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2023-11-02 08:46:07.381][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-11-02 08:46:07.383][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-11-02 08:46:07.384][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2023-11-02 08:46:07.386][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2023-11-02 08:46:07.387][ef$get] 1 fields were returned.
biodb.TRACE[2023-11-02 08:46:07.388][ef$get] fields variable is a list.
biodb.TRACE[2023-11-02 08:46:07.390][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2023-11-02 08:46:07.392][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2023-11-02 08:46:07.393][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-11-02 08:46:07.394][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-11-02 08:46:07.396][ef$get] Asked field names are: formula.
biodb.TRACE[2023-11-02 08:46:07.397][ef$get] Realnames of fields are: formula.
biodb.TRACE[2023-11-02 08:46:07.399][ef$get] 1 fields were returned.
biodb.TRACE[2023-11-02 08:46:07.400][ef$get] fields variable is a list.
biodb.TRACE[2023-11-02 08:46:07.402][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2023-11-02 08:46:07.403][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2023-11-02 08:46:07.405][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-11-02 08:46:07.406][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-11-02 08:46:07.407][ef$get] Asked field names are: inchi.
biodb.TRACE[2023-11-02 08:46:07.409][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2023-11-02 08:46:07.410][ef$get] 1 fields were returned.
biodb.TRACE[2023-11-02 08:46:07.412][ef$get] fields variable is a list.
biodb.TRACE[2023-11-02 08:46:07.414][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2023-11-02 08:46:07.415][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2023-11-02 08:46:07.416][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-11-02 08:46:07.425][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-11-02 08:46:07.428][ef$get] Asked field names are: inchikey.
biodb.TRACE[2023-11-02 08:46:07.429][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-11-02 08:46:07.431][ef$get] 1 fields were returned.
biodb.TRACE[2023-11-02 08:46:07.432][ef$get] fields variable is a list.
biodb.TRACE[2023-11-02 08:46:07.434][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2023-11-02 08:46:07.436][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-11-02 08:46:07.438][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-11-02 08:46:07.439][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-11-02 08:46:07.440][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-11-02 08:46:07.442][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-11-02 08:46:07.443][ef$get] 1 fields were returned.
biodb.TRACE[2023-11-02 08:46:07.445][ef$get] fields variable is a list.
biodb.TRACE[2023-11-02 08:46:07.447][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-11-02 08:46:07.448][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-11-02 08:46:07.449][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-11-02 08:46:07.451][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-11-02 08:46:07.452][ef$get] Asked field names are: name.
biodb.TRACE[2023-11-02 08:46:07.454][ef$get] Realnames of fields are: name.
biodb.TRACE[2023-11-02 08:46:07.455][ef$get] 1 fields were returned.
biodb.TRACE[2023-11-02 08:46:07.456][ef$get] fields variable is a list.
biodb.TRACE[2023-11-02 08:46:07.458][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2023-11-02 08:46:07.460][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2023-11-02 08:46:07.461][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-11-02 08:46:07.462][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-11-02 08:46:07.464][ef$get] Asked field names are: description.
biodb.TRACE[2023-11-02 08:46:07.465][ef$get] Realnames of fields are: description.
biodb.TRACE[2023-11-02 08:46:07.467][ef$get] 1 fields were returned.
biodb.TRACE[2023-11-02 08:46:07.468][ef$get] fields variable is a list.
biodb.TRACE[2023-11-02 08:46:07.470][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2023-11-02 08:46:07.471][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2023-11-02 08:46:07.473][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-11-02 08:46:07.474][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-11-02 08:46:07.476][ef$get] Asked field names are: smiles.
biodb.TRACE[2023-11-02 08:46:07.477][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2023-11-02 08:46:07.479][ef$get] 1 fields were returned.
biodb.TRACE[2023-11-02 08:46:07.480][ef$get] fields variable is a list.
biodb.TRACE[2023-11-02 08:46:07.482][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2023-11-02 08:46:07.484][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2023-11-02 08:46:07.485][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-11-02 08:46:07.487][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-11-02 08:46:07.488][ef$get] Asked field names are: super.class.
biodb.TRACE[2023-11-02 08:46:07.490][ef$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2023-11-02 08:46:07.491][ef$get] 1 fields were returned.
biodb.TRACE[2023-11-02 08:46:07.493][ef$get] fields variable is a list.
biodb.TRACE[2023-11-02 08:46:07.495][self$getBiodb()$getEntryFields()$get] Asked field names are: super.class.
biodb.TRACE[2023-11-02 08:46:07.496][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2023-11-02 08:46:07.498][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-11-02 08:46:07.499][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-11-02 08:46:07.501][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-11-02 08:46:07.503][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-11-02 08:46:07.504][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-11-02 08:46:07.505][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-11-02 08:46:07.507][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-11-02 08:46:07.508][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-11-02 08:46:07.510][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-11-02 08:46:07.511][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-11-02 08:46:07.512][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-11-02 08:46:07.514][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-11-02 08:46:07.515][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-11-02 08:46:07.517][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-11-02 08:46:07.518][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2023-11-02 08:46:07.520][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2023-11-02 08:46:07.521][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-11-02 08:46:07.523][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-11-02 08:46:07.524][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2023-11-02 08:46:07.526][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2023-11-02 08:46:07.527][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-11-02 08:46:07.528][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-11-02 08:46:07.530][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2023-11-02 08:46:07.531][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2023-11-02 08:46:07.533][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-11-02 08:46:07.534][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-11-02 08:46:07.536][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2023-11-02 08:46:07.537][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2023-11-02 08:46:07.539][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-11-02 08:46:07.540][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-11-02 08:46:07.541][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2023-11-02 08:46:07.543][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2023-11-02 08:46:07.544][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-11-02 08:46:07.546][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-11-02 08:46:07.547][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2023-11-02 08:46:07.549][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2023-11-02 08:46:07.550][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-11-02 08:46:07.551][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-11-02 08:46:07.553][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-11-02 08:46:07.555][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-11-02 08:46:07.556][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-11-02 08:46:07.557][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-11-02 08:46:07.559][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-11-02 08:46:07.560][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-11-02 08:46:07.562][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-11-02 08:46:07.571][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-11-02 08:46:07.573][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-11-02 08:46:07.574][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-11-02 08:46:07.576][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-11-02 08:46:07.577][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-11-02 08:46:07.579][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2023-11-02 08:46:07.581][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2023-11-02 08:46:07.582][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-11-02 08:46:07.583][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-11-02 08:46:07.585][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2023-11-02 08:46:07.586][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2023-11-02 08:46:07.588][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-11-02 08:46:07.589][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-11-02 08:46:07.590][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2023-11-02 08:46:07.592][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2023-11-02 08:46:07.593][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-11-02 08:46:07.594][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-11-02 08:46:07.596][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2023-11-02 08:46:07.597][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2023-11-02 08:46:07.599][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-11-02 08:46:07.600][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-11-02 08:46:07.601][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2023-11-02 08:46:07.603][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2023-11-02 08:46:07.604][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-11-02 08:46:07.605][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-11-02 08:46:07.607][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2023-11-02 08:46:07.608][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2023-11-02 08:46:07.610][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-11-02 08:46:07.611][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-11-02 08:46:07.613][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2023-11-02 08:46:07.614][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2023-11-02 08:46:07.615][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-11-02 08:46:07.617][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-11-02 08:46:07.618][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2023-11-02 08:46:07.620][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2023-11-02 08:46:07.621][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-11-02 08:46:07.622][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-11-02 08:46:07.624][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2023-11-02 08:46:07.625][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2023-11-02 08:46:07.627][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-11-02 08:46:07.628][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-11-02 08:46:07.630][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.super.class.
biodb.TRACE[2023-11-02 08:46:07.631][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2023-11-02 08:46:07.633][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-11-02 08:46:07.634][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-11-02 08:46:07.635][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.super.class.
biodb.TRACE[2023-11-02 08:46:07.637][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2023-11-02 08:46:07.638][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-11-02 08:46:07.640][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-11-02 08:46:07.641][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.super.class.
biodb.TRACE[2023-11-02 08:46:07.643][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2023-11-02 08:46:07.644][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-11-02 08:46:07.645][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-11-02 08:46:07.647][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2023-11-02 08:46:07.648][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2023-11-02 08:46:07.650][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-11-02 08:46:07.651][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-11-02 08:46:07.653][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2023-11-02 08:46:07.654][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2023-11-02 08:46:07.655][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-11-02 08:46:07.657][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-11-02 08:46:07.658][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2023-11-02 08:46:07.660][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2023-11-02 08:46:07.661][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-11-02 08:46:07.662][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-11-02 08:46:07.664][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2023-11-02 08:46:07.666][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2023-11-02 08:46:07.667][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-11-02 08:46:07.668][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-11-02 08:46:07.670][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2023-11-02 08:46:07.671][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2023-11-02 08:46:07.673][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-11-02 08:46:07.674][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-11-02 08:46:07.675][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2023-11-02 08:46:07.677][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2023-11-02 08:46:07.678][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-11-02 08:46:07.680][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-11-02 08:46:07.681][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2023-11-02 08:46:07.683][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2023-11-02 08:46:07.684][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-11-02 08:46:07.685][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-11-02 08:46:07.687][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2023-11-02 08:46:07.688][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2023-11-02 08:46:07.690][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-11-02 08:46:07.691][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-11-02 08:46:07.692][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2023-11-02 08:46:07.694][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2023-11-02 08:46:07.695][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-11-02 08:46:07.697][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-11-02 08:46:07.698][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2023-11-02 08:46:07.700][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-11-02 08:46:07.701][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-11-02 08:46:07.702][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-11-02 08:46:07.712][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2023-11-02 08:46:07.714][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-11-02 08:46:07.715][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-11-02 08:46:07.717][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-11-02 08:46:07.718][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2023-11-02 08:46:07.720][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-11-02 08:46:07.722][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-11-02 08:46:07.723][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-11-02 08:46:07.724][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2023-11-02 08:46:07.726][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2023-11-02 08:46:07.727][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-11-02 08:46:07.729][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-11-02 08:46:07.730][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2023-11-02 08:46:07.732][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2023-11-02 08:46:07.733][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-11-02 08:46:07.734][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-11-02 08:46:07.736][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2023-11-02 08:46:07.737][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2023-11-02 08:46:07.739][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-11-02 08:46:07.740][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-11-02 08:46:07.741][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-11-02 08:46:07.743][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-11-02 08:46:07.744][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-11-02 08:46:07.746][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-11-02 08:46:07.747][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-11-02 08:46:07.748][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-11-02 08:46:07.750][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-11-02 08:46:07.751][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-11-02 08:46:07.752][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-11-02 08:46:07.754][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-11-02 08:46:07.755][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-11-02 08:46:07.757][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-11-02 08:46:07.758][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2023-11-02 08:46:07.760][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2023-11-02 08:46:07.761][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-11-02 08:46:07.762][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-11-02 08:46:07.764][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2023-11-02 08:46:07.765][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2023-11-02 08:46:07.767][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-11-02 08:46:07.768][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-11-02 08:46:07.769][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2023-11-02 08:46:07.771][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2023-11-02 08:46:07.772][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-11-02 08:46:07.774][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-11-02 08:46:07.775][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-11-02 08:46:07.777][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-11-02 08:46:07.778][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-11-02 08:46:07.779][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-11-02 08:46:07.781][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-11-02 08:46:07.782][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-11-02 08:46:07.784][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-11-02 08:46:07.785][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-11-02 08:46:07.786][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-11-02 08:46:07.788][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-11-02 08:46:07.789][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-11-02 08:46:07.791][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-11-02 08:46:07.792][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2023-11-02 08:46:07.794][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2023-11-02 08:46:07.795][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-11-02 08:46:07.796][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-11-02 08:46:07.798][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2023-11-02 08:46:07.799][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2023-11-02 08:46:07.800][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-11-02 08:46:07.802][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-11-02 08:46:07.803][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2023-11-02 08:46:07.805][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2023-11-02 08:46:07.806][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-11-02 08:46:07.807][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-11-02 08:46:07.809][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2023-11-02 08:46:07.810][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2023-11-02 08:46:07.812][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-11-02 08:46:07.813][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-11-02 08:46:07.815][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2023-11-02 08:46:07.816][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2023-11-02 08:46:07.818][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-11-02 08:46:07.819][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-11-02 08:46:07.820][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2023-11-02 08:46:07.822][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2023-11-02 08:46:07.823][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-11-02 08:46:07.824][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-11-02 08:46:07.826][self$getBiodb()$getEntryFields()$get] Asked field names are: INCHIKEY.
biodb.TRACE[2023-11-02 08:46:07.827][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-11-02 08:46:07.829][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-11-02 08:46:07.830][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-11-02 08:46:07.832][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2023-11-02 08:46:07.833][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-11-02 08:46:07.834][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-11-02 08:46:07.836][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-11-02 08:46:07.837][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2023-11-02 08:46:07.839][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-11-02 08:46:07.840][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-11-02 08:46:07.842][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-11-02 08:46:07.843][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2023-11-02 08:46:07.852][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-11-02 08:46:07.854][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-11-02 08:46:07.855][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-11-02 08:46:07.857][self$getBiodb()$getEntryFields()$get] Asked field names are: INCHIKEY.
biodb.TRACE[2023-11-02 08:46:07.858][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-11-02 08:46:07.860][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-11-02 08:46:07.861][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-11-02 08:46:07.864][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2023-11-02 08:46:07.866][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2023-11-02 08:46:07.867][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-11-02 08:46:07.868][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-11-02 08:46:07.870][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2023-11-02 08:46:07.871][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2023-11-02 08:46:07.872][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-11-02 08:46:07.874][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-11-02 08:46:07.875][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2023-11-02 08:46:07.877][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2023-11-02 08:46:07.878][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-11-02 08:46:07.879][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-11-02 08:46:07.881][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2023-11-02 08:46:07.882][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2023-11-02 08:46:07.884][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-11-02 08:46:07.885][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-11-02 08:46:07.886][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2023-11-02 08:46:07.888][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2023-11-02 08:46:07.889][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-11-02 08:46:07.891][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-11-02 08:46:07.892][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2023-11-02 08:46:07.894][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2023-11-02 08:46:07.895][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-11-02 08:46:07.897][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-11-02 08:46:07.898][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2023-11-02 08:46:07.900][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2023-11-02 08:46:07.901][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-11-02 08:46:07.902][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-11-02 08:46:07.904][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-11-02 08:46:07.905][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-11-02 08:46:07.907][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-11-02 08:46:07.908][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-11-02 08:46:07.910][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2023-11-02 08:46:07.911][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2023-11-02 08:46:07.912][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-11-02 08:46:07.914][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-11-02 08:46:07.915][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-11-02 08:46:07.917][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-11-02 08:46:07.918][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-11-02 08:46:07.919][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-11-02 08:46:07.921][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-11-02 08:46:07.922][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-11-02 08:46:07.924][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-11-02 08:46:07.925][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-11-02 08:46:07.926][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-11-02 08:46:07.928][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-11-02 08:46:07.929][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-11-02 08:46:07.931][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-11-02 08:46:07.932][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-11-02 08:46:07.934][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-11-02 08:46:07.935][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-11-02 08:46:07.937][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-11-02 08:46:07.938][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-11-02 08:46:07.939][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-11-02 08:46:07.941][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-11-02 08:46:07.942][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-11-02 08:46:07.943][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-11-02 08:46:07.945][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-11-02 08:46:07.946][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-11-02 08:46:07.948][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-11-02 08:46:07.949][self$createEntryFromContent] Accession numbers: HMDB0000001.
biodb.TRACE[2023-11-02 08:46:07.951][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2023-11-02 08:46:07.952][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2023-11-02 08:46:07.953][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-11-02 08:46:07.955][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-11-02 08:46:07.956][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2023-11-02 08:46:07.958][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2023-11-02 08:46:07.959][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-11-02 08:46:07.961][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-11-02 08:46:07.962][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2023-11-02 08:46:07.963][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2023-11-02 08:46:07.965][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-11-02 08:46:07.966][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-11-02 08:46:07.968][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2023-11-02 08:46:07.969][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2023-11-02 08:46:07.970][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-11-02 08:46:07.972][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-11-02 08:46:07.973][private$doSearchForEntries] MATCHED = TRUE
biodb.DEBUG[2023-11-02 08:46:07.974][private$doSearchForEntries] COUNT IDS = 1
biodb.DEBUG[2023-11-02 08:46:07.976][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-11-02 08:46:07.977][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-11-02 08:46:07.978][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-11-02 08:46:07.996][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-11-02 08:46:07.997][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-11-02 08:46:07.999][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-11-02 08:46:08.000][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-11-02 08:46:08.002][private$loadEntries] Creating entries from ids [1]: "HMDB0000002".
biodb.DEBUG[2023-11-02 08:46:08.003][conn$getEntryContent] Get HMDB Metabolites entry content(s) for 1 id(s)...
biodb.DEBUG[2023-11-02 08:46:08.005][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2023-11-02 08:46:08.007][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.TRACE[2023-11-02 08:46:08.010][cch$loadFileContent] Trying to load 1 files from cache: [1]: "HMDB0000002".
biodb.TRACE[2023-11-02 08:46:08.011][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2023-11-02 08:46:08.014][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/.cache/R/biodb/hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34/HMDB0000002.xml".
biodb.DEBUG[2023-11-02 08:46:08.016][conn$getEntryContent] 1 HMDB Metabolites entry content(s) loaded from cache.
biodb.DEBUG[2023-11-02 08:46:08.017][self$createEntryFromContent] Creating HMDB Metabolites entries from 1 content(s).
biodb.DEBUG[2023-11-02 08:46:08.019][self$createEntryFromContent] Parsing 1 HMDB Metabolites entries.
biodb.DEBUG[2023-11-02 08:46:08.021][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-11-02 08:46:08.022][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-11-02 08:46:08.023][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-11-02 08:46:08.032][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-11-02 08:46:08.033][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-11-02 08:46:08.035][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-11-02 08:46:08.036][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-11-02 08:46:08.040][ef$get] Asked field names are: accession.
biodb.TRACE[2023-11-02 08:46:08.041][ef$get] Realnames of fields are: accession.
biodb.TRACE[2023-11-02 08:46:08.043][ef$get] 1 fields were returned.
biodb.TRACE[2023-11-02 08:46:08.044][ef$get] fields variable is a list.
biodb.TRACE[2023-11-02 08:46:08.045][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-11-02 08:46:08.047][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-11-02 08:46:08.048][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-11-02 08:46:08.050][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-11-02 08:46:08.051][ef$get] Asked field names are: secondary.accessions.
biodb.TRACE[2023-11-02 08:46:08.052][ef$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2023-11-02 08:46:08.054][ef$get] 1 fields were returned.
biodb.TRACE[2023-11-02 08:46:08.055][ef$get] fields variable is a list.
biodb.TRACE[2023-11-02 08:46:08.057][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2023-11-02 08:46:08.058][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2023-11-02 08:46:08.059][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-11-02 08:46:08.061][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-11-02 08:46:08.062][ef$get] Asked field names are: average.mass.
biodb.TRACE[2023-11-02 08:46:08.064][ef$get] Realnames of fields are: average.mass.
biodb.TRACE[2023-11-02 08:46:08.065][ef$get] 1 fields were returned.
biodb.TRACE[2023-11-02 08:46:08.066][ef$get] fields variable is a list.
biodb.TRACE[2023-11-02 08:46:08.068][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2023-11-02 08:46:08.069][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2023-11-02 08:46:08.071][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-11-02 08:46:08.072][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-11-02 08:46:08.073][ef$get] Asked field names are: cas.id.
biodb.TRACE[2023-11-02 08:46:08.075][ef$get] Realnames of fields are: cas.id.
biodb.TRACE[2023-11-02 08:46:08.076][ef$get] 1 fields were returned.
biodb.TRACE[2023-11-02 08:46:08.077][ef$get] fields variable is a list.
biodb.TRACE[2023-11-02 08:46:08.079][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2023-11-02 08:46:08.081][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2023-11-02 08:46:08.082][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-11-02 08:46:08.083][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-11-02 08:46:08.085][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2023-11-02 08:46:08.086][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-11-02 08:46:08.087][ef$get] 1 fields were returned.
biodb.TRACE[2023-11-02 08:46:08.089][ef$get] fields variable is a list.
biodb.TRACE[2023-11-02 08:46:08.090][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-11-02 08:46:08.092][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-11-02 08:46:08.093][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-11-02 08:46:08.094][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-11-02 08:46:08.096][ef$get] Asked field names are: chemspider.id.
biodb.TRACE[2023-11-02 08:46:08.097][ef$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2023-11-02 08:46:08.099][ef$get] 1 fields were returned.
biodb.TRACE[2023-11-02 08:46:08.100][ef$get] fields variable is a list.
biodb.TRACE[2023-11-02 08:46:08.102][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2023-11-02 08:46:08.103][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2023-11-02 08:46:08.104][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-11-02 08:46:08.106][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-11-02 08:46:08.107][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2023-11-02 08:46:08.109][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2023-11-02 08:46:08.110][ef$get] 1 fields were returned.
biodb.TRACE[2023-11-02 08:46:08.111][ef$get] fields variable is a list.
biodb.TRACE[2023-11-02 08:46:08.113][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2023-11-02 08:46:08.115][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2023-11-02 08:46:08.116][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-11-02 08:46:08.117][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-11-02 08:46:08.119][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-11-02 08:46:08.120][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-11-02 08:46:08.121][ef$get] 1 fields were returned.
biodb.TRACE[2023-11-02 08:46:08.131][ef$get] fields variable is a list.
biodb.TRACE[2023-11-02 08:46:08.133][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-11-02 08:46:08.135][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-11-02 08:46:08.136][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-11-02 08:46:08.138][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-11-02 08:46:08.139][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2023-11-02 08:46:08.141][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2023-11-02 08:46:08.142][ef$get] 1 fields were returned.
biodb.TRACE[2023-11-02 08:46:08.143][ef$get] fields variable is a list.
biodb.TRACE[2023-11-02 08:46:08.145][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2023-11-02 08:46:08.147][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2023-11-02 08:46:08.148][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-11-02 08:46:08.149][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-11-02 08:46:08.151][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2023-11-02 08:46:08.152][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2023-11-02 08:46:08.153][ef$get] 1 fields were returned.
biodb.TRACE[2023-11-02 08:46:08.155][ef$get] fields variable is a list.
biodb.TRACE[2023-11-02 08:46:08.156][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2023-11-02 08:46:08.158][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2023-11-02 08:46:08.159][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-11-02 08:46:08.160][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-11-02 08:46:08.162][ef$get] Asked field names are: formula.
biodb.TRACE[2023-11-02 08:46:08.163][ef$get] Realnames of fields are: formula.
biodb.TRACE[2023-11-02 08:46:08.165][ef$get] 1 fields were returned.
biodb.TRACE[2023-11-02 08:46:08.166][ef$get] fields variable is a list.
biodb.TRACE[2023-11-02 08:46:08.168][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2023-11-02 08:46:08.169][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2023-11-02 08:46:08.170][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-11-02 08:46:08.172][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-11-02 08:46:08.173][ef$get] Asked field names are: inchi.
biodb.TRACE[2023-11-02 08:46:08.175][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2023-11-02 08:46:08.176][ef$get] 1 fields were returned.
biodb.TRACE[2023-11-02 08:46:08.177][ef$get] fields variable is a list.
biodb.TRACE[2023-11-02 08:46:08.182][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2023-11-02 08:46:08.185][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2023-11-02 08:46:08.186][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-11-02 08:46:08.188][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-11-02 08:46:08.190][ef$get] Asked field names are: inchikey.
biodb.TRACE[2023-11-02 08:46:08.191][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-11-02 08:46:08.193][ef$get] 1 fields were returned.
biodb.TRACE[2023-11-02 08:46:08.194][ef$get] fields variable is a list.
biodb.TRACE[2023-11-02 08:46:08.197][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2023-11-02 08:46:08.198][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-11-02 08:46:08.200][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-11-02 08:46:08.201][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-11-02 08:46:08.203][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-11-02 08:46:08.204][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-11-02 08:46:08.206][ef$get] 1 fields were returned.
biodb.TRACE[2023-11-02 08:46:08.207][ef$get] fields variable is a list.
biodb.TRACE[2023-11-02 08:46:08.209][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-11-02 08:46:08.211][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-11-02 08:46:08.212][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-11-02 08:46:08.213][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-11-02 08:46:08.215][ef$get] Asked field names are: name.
biodb.TRACE[2023-11-02 08:46:08.217][ef$get] Realnames of fields are: name.
biodb.TRACE[2023-11-02 08:46:08.218][ef$get] 1 fields were returned.
biodb.TRACE[2023-11-02 08:46:08.219][ef$get] fields variable is a list.
biodb.TRACE[2023-11-02 08:46:08.221][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2023-11-02 08:46:08.223][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2023-11-02 08:46:08.224][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-11-02 08:46:08.226][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-11-02 08:46:08.227][ef$get] Asked field names are: description.
biodb.TRACE[2023-11-02 08:46:08.229][ef$get] Realnames of fields are: description.
biodb.TRACE[2023-11-02 08:46:08.230][ef$get] 1 fields were returned.
biodb.TRACE[2023-11-02 08:46:08.232][ef$get] fields variable is a list.
biodb.TRACE[2023-11-02 08:46:08.234][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2023-11-02 08:46:08.235][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2023-11-02 08:46:08.237][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-11-02 08:46:08.238][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-11-02 08:46:08.240][ef$get] Asked field names are: smiles.
biodb.TRACE[2023-11-02 08:46:08.241][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2023-11-02 08:46:08.243][ef$get] 1 fields were returned.
biodb.TRACE[2023-11-02 08:46:08.244][ef$get] fields variable is a list.
biodb.TRACE[2023-11-02 08:46:08.246][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2023-11-02 08:46:08.248][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2023-11-02 08:46:08.249][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-11-02 08:46:08.251][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-11-02 08:46:08.252][ef$get] Asked field names are: super.class.
biodb.TRACE[2023-11-02 08:46:08.254][ef$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2023-11-02 08:46:08.255][ef$get] 1 fields were returned.
biodb.TRACE[2023-11-02 08:46:08.257][ef$get] fields variable is a list.
biodb.TRACE[2023-11-02 08:46:08.259][self$getBiodb()$getEntryFields()$get] Asked field names are: super.class.
biodb.TRACE[2023-11-02 08:46:08.260][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2023-11-02 08:46:08.262][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-11-02 08:46:08.263][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-11-02 08:46:08.265][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-11-02 08:46:08.267][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-11-02 08:46:08.268][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-11-02 08:46:08.269][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-11-02 08:46:08.271][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-11-02 08:46:08.272][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-11-02 08:46:08.289][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-11-02 08:46:08.291][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-11-02 08:46:08.293][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-11-02 08:46:08.295][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-11-02 08:46:08.296][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-11-02 08:46:08.298][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-11-02 08:46:08.299][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2023-11-02 08:46:08.301][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2023-11-02 08:46:08.302][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-11-02 08:46:08.304][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-11-02 08:46:08.305][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2023-11-02 08:46:08.306][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2023-11-02 08:46:08.308][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-11-02 08:46:08.309][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-11-02 08:46:08.311][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2023-11-02 08:46:08.312][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2023-11-02 08:46:08.313][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-11-02 08:46:08.315][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-11-02 08:46:08.316][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2023-11-02 08:46:08.318][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2023-11-02 08:46:08.319][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-11-02 08:46:08.320][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-11-02 08:46:08.322][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2023-11-02 08:46:08.323][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2023-11-02 08:46:08.325][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-11-02 08:46:08.326][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-11-02 08:46:08.327][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2023-11-02 08:46:08.329][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2023-11-02 08:46:08.330][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-11-02 08:46:08.331][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-11-02 08:46:08.333][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-11-02 08:46:08.334][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-11-02 08:46:08.336][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-11-02 08:46:08.337][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-11-02 08:46:08.338][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-11-02 08:46:08.340][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-11-02 08:46:08.341][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-11-02 08:46:08.342][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-11-02 08:46:08.344][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-11-02 08:46:08.345][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-11-02 08:46:08.346][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-11-02 08:46:08.348][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-11-02 08:46:08.349][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2023-11-02 08:46:08.350][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2023-11-02 08:46:08.351][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-11-02 08:46:08.353][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-11-02 08:46:08.354][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2023-11-02 08:46:08.355][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2023-11-02 08:46:08.357][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-11-02 08:46:08.358][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-11-02 08:46:08.359][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2023-11-02 08:46:08.361][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2023-11-02 08:46:08.362][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-11-02 08:46:08.363][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-11-02 08:46:08.364][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2023-11-02 08:46:08.366][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2023-11-02 08:46:08.367][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-11-02 08:46:08.368][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-11-02 08:46:08.370][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2023-11-02 08:46:08.371][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2023-11-02 08:46:08.372][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-11-02 08:46:08.374][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-11-02 08:46:08.375][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2023-11-02 08:46:08.376][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2023-11-02 08:46:08.378][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-11-02 08:46:08.379][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-11-02 08:46:08.380][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2023-11-02 08:46:08.381][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2023-11-02 08:46:08.383][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-11-02 08:46:08.384][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-11-02 08:46:08.385][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2023-11-02 08:46:08.387][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2023-11-02 08:46:08.388][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-11-02 08:46:08.389][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-11-02 08:46:08.390][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2023-11-02 08:46:08.392][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2023-11-02 08:46:08.393][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-11-02 08:46:08.394][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-11-02 08:46:08.396][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.super.class.
biodb.TRACE[2023-11-02 08:46:08.397][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2023-11-02 08:46:08.398][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-11-02 08:46:08.400][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-11-02 08:46:08.401][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.super.class.
biodb.TRACE[2023-11-02 08:46:08.402][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2023-11-02 08:46:08.403][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-11-02 08:46:08.405][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-11-02 08:46:08.406][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.super.class.
biodb.TRACE[2023-11-02 08:46:08.407][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2023-11-02 08:46:08.409][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-11-02 08:46:08.410][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-11-02 08:46:08.411][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2023-11-02 08:46:08.413][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2023-11-02 08:46:08.422][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-11-02 08:46:08.423][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-11-02 08:46:08.425][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2023-11-02 08:46:08.426][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2023-11-02 08:46:08.428][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-11-02 08:46:08.429][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-11-02 08:46:08.431][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2023-11-02 08:46:08.432][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2023-11-02 08:46:08.434][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-11-02 08:46:08.435][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-11-02 08:46:08.436][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2023-11-02 08:46:08.438][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2023-11-02 08:46:08.439][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-11-02 08:46:08.440][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-11-02 08:46:08.442][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2023-11-02 08:46:08.443][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2023-11-02 08:46:08.444][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-11-02 08:46:08.446][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-11-02 08:46:08.447][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2023-11-02 08:46:08.449][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2023-11-02 08:46:08.450][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-11-02 08:46:08.451][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-11-02 08:46:08.452][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2023-11-02 08:46:08.454][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2023-11-02 08:46:08.455][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-11-02 08:46:08.456][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-11-02 08:46:08.458][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2023-11-02 08:46:08.459][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2023-11-02 08:46:08.461][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-11-02 08:46:08.462][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-11-02 08:46:08.463][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2023-11-02 08:46:08.465][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2023-11-02 08:46:08.466][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-11-02 08:46:08.467][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-11-02 08:46:08.469][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2023-11-02 08:46:08.470][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-11-02 08:46:08.471][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-11-02 08:46:08.473][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-11-02 08:46:08.474][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2023-11-02 08:46:08.476][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-11-02 08:46:08.477][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-11-02 08:46:08.478][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-11-02 08:46:08.480][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2023-11-02 08:46:08.481][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-11-02 08:46:08.482][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-11-02 08:46:08.484][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-11-02 08:46:08.485][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2023-11-02 08:46:08.487][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2023-11-02 08:46:08.488][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-11-02 08:46:08.489][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-11-02 08:46:08.490][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2023-11-02 08:46:08.492][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2023-11-02 08:46:08.493][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-11-02 08:46:08.494][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-11-02 08:46:08.496][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2023-11-02 08:46:08.497][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2023-11-02 08:46:08.499][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-11-02 08:46:08.500][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-11-02 08:46:08.501][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-11-02 08:46:08.503][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-11-02 08:46:08.504][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-11-02 08:46:08.505][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-11-02 08:46:08.507][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-11-02 08:46:08.508][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-11-02 08:46:08.509][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-11-02 08:46:08.511][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-11-02 08:46:08.512][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-11-02 08:46:08.513][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-11-02 08:46:08.515][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-11-02 08:46:08.516][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-11-02 08:46:08.517][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2023-11-02 08:46:08.519][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2023-11-02 08:46:08.520][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-11-02 08:46:08.521][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-11-02 08:46:08.523][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2023-11-02 08:46:08.524][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2023-11-02 08:46:08.526][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-11-02 08:46:08.527][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-11-02 08:46:08.528][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2023-11-02 08:46:08.530][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2023-11-02 08:46:08.531][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-11-02 08:46:08.532][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-11-02 08:46:08.534][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-11-02 08:46:08.535][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-11-02 08:46:08.536][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-11-02 08:46:08.538][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-11-02 08:46:08.539][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-11-02 08:46:08.540][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-11-02 08:46:08.542][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-11-02 08:46:08.543][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-11-02 08:46:08.544][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-11-02 08:46:08.546][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-11-02 08:46:08.555][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-11-02 08:46:08.557][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-11-02 08:46:08.558][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2023-11-02 08:46:08.560][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2023-11-02 08:46:08.561][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-11-02 08:46:08.563][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-11-02 08:46:08.564][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2023-11-02 08:46:08.566][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2023-11-02 08:46:08.567][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-11-02 08:46:08.568][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-11-02 08:46:08.570][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2023-11-02 08:46:08.571][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2023-11-02 08:46:08.572][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-11-02 08:46:08.574][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-11-02 08:46:08.575][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2023-11-02 08:46:08.576][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2023-11-02 08:46:08.578][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-11-02 08:46:08.579][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-11-02 08:46:08.580][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2023-11-02 08:46:08.582][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2023-11-02 08:46:08.583][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-11-02 08:46:08.584][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-11-02 08:46:08.586][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2023-11-02 08:46:08.587][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2023-11-02 08:46:08.588][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-11-02 08:46:08.590][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-11-02 08:46:08.591][self$getBiodb()$getEntryFields()$get] Asked field names are: INCHIKEY.
biodb.TRACE[2023-11-02 08:46:08.592][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-11-02 08:46:08.594][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-11-02 08:46:08.595][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-11-02 08:46:08.596][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2023-11-02 08:46:08.598][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-11-02 08:46:08.599][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-11-02 08:46:08.600][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-11-02 08:46:08.602][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2023-11-02 08:46:08.603][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-11-02 08:46:08.605][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-11-02 08:46:08.606][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-11-02 08:46:08.607][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2023-11-02 08:46:08.609][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-11-02 08:46:08.610][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-11-02 08:46:08.611][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-11-02 08:46:08.613][self$getBiodb()$getEntryFields()$get] Asked field names are: INCHIKEY.
biodb.TRACE[2023-11-02 08:46:08.614][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-11-02 08:46:08.615][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-11-02 08:46:08.617][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-11-02 08:46:08.619][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2023-11-02 08:46:08.621][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2023-11-02 08:46:08.622][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-11-02 08:46:08.623][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-11-02 08:46:08.625][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2023-11-02 08:46:08.626][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2023-11-02 08:46:08.627][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-11-02 08:46:08.628][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-11-02 08:46:08.630][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2023-11-02 08:46:08.631][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2023-11-02 08:46:08.633][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-11-02 08:46:08.634][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-11-02 08:46:08.635][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2023-11-02 08:46:08.637][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2023-11-02 08:46:08.638][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-11-02 08:46:08.639][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-11-02 08:46:08.641][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2023-11-02 08:46:08.642][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2023-11-02 08:46:08.643][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-11-02 08:46:08.645][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-11-02 08:46:08.646][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2023-11-02 08:46:08.648][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2023-11-02 08:46:08.649][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-11-02 08:46:08.650][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-11-02 08:46:08.651][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2023-11-02 08:46:08.653][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2023-11-02 08:46:08.654][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-11-02 08:46:08.655][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-11-02 08:46:08.657][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-11-02 08:46:08.658][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-11-02 08:46:08.659][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-11-02 08:46:08.661][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-11-02 08:46:08.662][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2023-11-02 08:46:08.664][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2023-11-02 08:46:08.665][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-11-02 08:46:08.666][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-11-02 08:46:08.668][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-11-02 08:46:08.669][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-11-02 08:46:08.670][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-11-02 08:46:08.672][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-11-02 08:46:08.673][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-11-02 08:46:08.674][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-11-02 08:46:08.676][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-11-02 08:46:08.677][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-11-02 08:46:08.678][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-11-02 08:46:08.687][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-11-02 08:46:08.689][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-11-02 08:46:08.691][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-11-02 08:46:08.693][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-11-02 08:46:08.694][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-11-02 08:46:08.696][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-11-02 08:46:08.697][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-11-02 08:46:08.698][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-11-02 08:46:08.700][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-11-02 08:46:08.701][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-11-02 08:46:08.702][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-11-02 08:46:08.704][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-11-02 08:46:08.705][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-11-02 08:46:08.707][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-11-02 08:46:08.708][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-11-02 08:46:08.709][self$createEntryFromContent] Accession numbers: HMDB0000002.
biodb.TRACE[2023-11-02 08:46:08.711][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2023-11-02 08:46:08.712][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2023-11-02 08:46:08.713][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-11-02 08:46:08.715][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-11-02 08:46:08.716][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2023-11-02 08:46:08.718][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2023-11-02 08:46:08.719][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-11-02 08:46:08.720][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-11-02 08:46:08.721][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2023-11-02 08:46:08.723][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2023-11-02 08:46:08.724][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-11-02 08:46:08.725][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-11-02 08:46:08.727][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2023-11-02 08:46:08.728][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2023-11-02 08:46:08.729][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-11-02 08:46:08.731][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-11-02 08:46:08.732][private$doSearchForEntries] MATCHED = TRUE
biodb.DEBUG[2023-11-02 08:46:08.733][private$doSearchForEntries] COUNT IDS = 2
biodb.DEBUG[2023-11-02 08:46:08.735][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-11-02 08:46:08.736][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-11-02 08:46:08.738][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-11-02 08:46:08.746][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-11-02 08:46:08.748][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-11-02 08:46:08.749][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-11-02 08:46:08.750][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-11-02 08:46:08.757][private$doSearchForEntries] fields NAMES = description
biodb.DEBUG[2023-11-02 08:46:08.759][private$doSearchForEntries] fields VALUES = c("histidine", "cerebrovascular")
biodb.DEBUG[2023-11-02 08:46:08.760][private$doSearchForEntries] fields VALUES = c("histidine", "cerebrovascular")
biodb.DEBUG[2023-11-02 08:46:08.762][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2023-11-02 08:46:08.764][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2023-11-02 08:46:08.766][private$doGetEntryIds] .doGetEntryIds 10
biodb.DEBUG[2023-11-02 08:46:08.768][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2023-11-02 08:46:08.769][private$doGetEntryIds] .doGetEntryIds 11
biodb.DEBUG[2023-11-02 08:46:08.771][private$doListFiles] List files in /home/biocbuild/.cache/R/biodb/hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34 using pattern ^.*\.xml$.
biodb.DEBUG[2023-11-02 08:46:08.772][cch$listFiles] Extracting accession number from file names associated with hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34 using pattern ^(.*)\.xml$
biodb.DEBUG[2023-11-02 08:46:08.774][cch$listFiles] files = HMDB0000001.xml, HMDB0000002.xml
biodb.DEBUG[2023-11-02 08:46:08.775][private$doGetEntryIds] COUNT IDS = 2
biodb.DEBUG[2023-11-02 08:46:08.776][private$doSearchForEntries] All IDs = [2]: "HMDB0000001, HMDB0000002"
biodb.DEBUG[2023-11-02 08:46:08.778][private$doSearchForEntries] Total number of IDs = 2
biodb.TRACE[2023-11-02 08:46:08.780][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2023-11-02 08:46:08.782][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2023-11-02 08:46:08.783][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-11-02 08:46:08.784][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-11-02 08:46:08.786][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2023-11-02 08:46:08.787][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2023-11-02 08:46:08.789][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-11-02 08:46:08.790][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-11-02 08:46:08.791][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2023-11-02 08:46:08.793][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2023-11-02 08:46:08.794][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-11-02 08:46:08.795][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-11-02 08:46:08.797][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2023-11-02 08:46:08.798][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2023-11-02 08:46:08.799][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-11-02 08:46:08.801][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-11-02 08:46:08.802][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2023-11-02 08:46:08.803][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2023-11-02 08:46:08.805][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-11-02 08:46:08.806][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-11-02 08:46:08.807][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2023-11-02 08:46:08.809][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2023-11-02 08:46:08.810][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-11-02 08:46:08.812][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-11-02 08:46:08.813][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2023-11-02 08:46:08.814][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2023-11-02 08:46:08.823][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-11-02 08:46:08.825][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-11-02 08:46:08.827][private$doSearchForEntries] MATCHED = TRUE
biodb.DEBUG[2023-11-02 08:46:08.828][private$doSearchForEntries] COUNT IDS = 1
biodb.DEBUG[2023-11-02 08:46:08.830][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-11-02 08:46:08.831][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-11-02 08:46:08.832][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-11-02 08:46:08.841][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-11-02 08:46:08.842][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-11-02 08:46:08.843][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-11-02 08:46:08.845][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-11-02 08:46:08.846][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2023-11-02 08:46:08.848][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2023-11-02 08:46:08.849][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-11-02 08:46:08.850][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-11-02 08:46:08.852][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2023-11-02 08:46:08.853][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2023-11-02 08:46:08.854][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-11-02 08:46:08.856][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-11-02 08:46:08.857][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2023-11-02 08:46:08.858][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2023-11-02 08:46:08.860][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-11-02 08:46:08.861][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-11-02 08:46:08.862][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2023-11-02 08:46:08.864][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2023-11-02 08:46:08.865][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-11-02 08:46:08.866][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-11-02 08:46:08.868][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2023-11-02 08:46:08.869][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2023-11-02 08:46:08.871][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-11-02 08:46:08.872][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-11-02 08:46:08.873][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2023-11-02 08:46:08.875][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2023-11-02 08:46:08.876][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-11-02 08:46:08.877][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-11-02 08:46:08.879][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2023-11-02 08:46:08.880][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2023-11-02 08:46:08.882][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-11-02 08:46:08.883][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-11-02 08:46:08.884][private$doSearchForEntries] MATCHED = FALSE
biodb.DEBUG[2023-11-02 08:46:08.886][private$doSearchForEntries] COUNT IDS = 1
biodb.DEBUG[2023-11-02 08:46:08.887][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-11-02 08:46:08.888][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-11-02 08:46:08.889][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-11-02 08:46:08.898][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-11-02 08:46:08.899][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-11-02 08:46:08.900][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-11-02 08:46:08.902][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-11-02 08:46:08.908][private$doSearchForEntries] fields NAMES = description
biodb.DEBUG[2023-11-02 08:46:08.910][private$doSearchForEntries] fields VALUES = c("monoalkylamines", "shiitakes")
biodb.DEBUG[2023-11-02 08:46:08.911][private$doSearchForEntries] fields VALUES = c("monoalkylamines", "shiitakes")
biodb.DEBUG[2023-11-02 08:46:08.913][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2023-11-02 08:46:08.915][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2023-11-02 08:46:08.917][private$doGetEntryIds] .doGetEntryIds 10
biodb.DEBUG[2023-11-02 08:46:08.919][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2023-11-02 08:46:08.920][private$doGetEntryIds] .doGetEntryIds 11
biodb.DEBUG[2023-11-02 08:46:08.922][private$doListFiles] List files in /home/biocbuild/.cache/R/biodb/hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34 using pattern ^.*\.xml$.
biodb.DEBUG[2023-11-02 08:46:08.923][cch$listFiles] Extracting accession number from file names associated with hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34 using pattern ^(.*)\.xml$
biodb.DEBUG[2023-11-02 08:46:08.925][cch$listFiles] files = HMDB0000001.xml, HMDB0000002.xml
biodb.DEBUG[2023-11-02 08:46:08.926][private$doGetEntryIds] COUNT IDS = 2
biodb.DEBUG[2023-11-02 08:46:08.927][private$doSearchForEntries] All IDs = [2]: "HMDB0000001, HMDB0000002"
biodb.DEBUG[2023-11-02 08:46:08.929][private$doSearchForEntries] Total number of IDs = 2
biodb.TRACE[2023-11-02 08:46:08.931][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2023-11-02 08:46:08.932][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2023-11-02 08:46:08.934][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-11-02 08:46:08.935][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-11-02 08:46:08.937][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2023-11-02 08:46:08.938][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2023-11-02 08:46:08.939][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-11-02 08:46:08.941][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-11-02 08:46:08.942][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2023-11-02 08:46:08.943][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2023-11-02 08:46:08.945][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-11-02 08:46:08.946][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-11-02 08:46:08.947][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2023-11-02 08:46:08.949][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2023-11-02 08:46:08.958][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-11-02 08:46:08.960][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-11-02 08:46:08.961][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2023-11-02 08:46:08.963][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2023-11-02 08:46:08.964][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-11-02 08:46:08.966][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-11-02 08:46:08.967][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2023-11-02 08:46:08.969][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2023-11-02 08:46:08.970][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-11-02 08:46:08.971][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-11-02 08:46:08.973][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2023-11-02 08:46:08.974][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2023-11-02 08:46:08.975][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-11-02 08:46:08.977][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-11-02 08:46:08.978][private$doSearchForEntries] MATCHED = FALSE
biodb.DEBUG[2023-11-02 08:46:08.979][private$doSearchForEntries] COUNT IDS = 0
biodb.DEBUG[2023-11-02 08:46:08.981][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-11-02 08:46:08.982][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-11-02 08:46:08.983][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-11-02 08:46:08.991][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-11-02 08:46:08.993][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-11-02 08:46:08.994][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-11-02 08:46:08.995][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-11-02 08:46:08.997][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2023-11-02 08:46:08.998][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2023-11-02 08:46:09.000][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-11-02 08:46:09.001][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-11-02 08:46:09.002][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2023-11-02 08:46:09.004][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2023-11-02 08:46:09.005][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-11-02 08:46:09.006][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-11-02 08:46:09.008][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2023-11-02 08:46:09.009][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2023-11-02 08:46:09.011][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-11-02 08:46:09.012][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-11-02 08:46:09.013][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2023-11-02 08:46:09.015][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2023-11-02 08:46:09.016][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-11-02 08:46:09.017][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-11-02 08:46:09.019][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2023-11-02 08:46:09.020][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2023-11-02 08:46:09.022][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-11-02 08:46:09.023][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-11-02 08:46:09.024][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2023-11-02 08:46:09.026][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2023-11-02 08:46:09.027][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-11-02 08:46:09.028][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-11-02 08:46:09.030][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2023-11-02 08:46:09.031][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2023-11-02 08:46:09.032][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-11-02 08:46:09.034][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-11-02 08:46:09.035][private$doSearchForEntries] MATCHED = TRUE
biodb.DEBUG[2023-11-02 08:46:09.036][private$doSearchForEntries] COUNT IDS = 1
biodb.DEBUG[2023-11-02 08:46:09.038][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-11-02 08:46:09.039][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-11-02 08:46:09.040][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-11-02 08:46:09.049][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-11-02 08:46:09.050][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-11-02 08:46:09.051][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-11-02 08:46:09.052][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.INFO [2023-11-02 08:46:09.064][biodb$terminate] Closing BiodbMain instance...
biodb.DEBUG[2023-11-02 08:46:09.065][private$conn[[conn]]$.__enclos_env__ ...] Unregister connector hmdb.metabolites from the request scheduler
biodb.INFO [2023-11-02 08:46:09.067][self$deleteConn] Connector "hmdb.metabolites" deleted.
biodb.DEBUG[2023-11-02 08:46:09.068][notifyObservers] Notify observers for terminate.
biodb.DEBUG[2023-11-02 08:46:09.069][FUN] Trying to call function terminate on observer BiodbTestMsgAck.
biodb.DEBUG[2023-11-02 08:46:09.070][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-11-02 08:46:09.072][FUN] Trying to call function terminate on observer BiodbEntryFields.
biodb.DEBUG[2023-11-02 08:46:09.073][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-11-02 08:46:09.074][FUN] Trying to call function terminate on observer BiodbConfig.
biodb.DEBUG[2023-11-02 08:46:09.075][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 243 ]
>
> proc.time()
user system elapsed
12.655 0.386 18.842