Dongmin Jung
| Snapshot Date: 2023-11-01 14:05:06 -0400 (Wed, 01 Nov 2023) |
| git_url: https://git.bioconductor.org/packages/VAExprs |
| git_branch: RELEASE_3_18 |
| git_last_commit: 7c08c18 |
| git_last_commit_date: 2023-10-24 11:35:13 -0400 (Tue, 24 Oct 2023) |
| Back to Multiple platform build/check report for BioC 3.18: simplified long |
|
This page was generated on 2023-11-02 11:41:25 -0400 (Thu, 02 Nov 2023).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| nebbiolo2 | Linux (Ubuntu 22.04.2 LTS) | x86_64 | 4.3.1 (2023-06-16) -- "Beagle Scouts" | 4729 |
| palomino4 | Windows Server 2022 Datacenter | x64 | 4.3.1 (2023-06-16 ucrt) -- "Beagle Scouts" | 4463 |
| lconway | macOS 12.6.5 Monterey | x86_64 | 4.3.1 Patched (2023-06-17 r84564) -- "Beagle Scouts" | 4478 |
| kunpeng2 | Linux (openEuler 22.03 LTS-SP1) | aarch64 | 4.3.1 (2023-06-16) -- "Beagle Scouts" | 4464 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
| Package 2212/2266 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| VAExprs 1.8.0 (landing page) Dongmin Jung
| nebbiolo2 | Linux (Ubuntu 22.04.2 LTS) / x86_64 | OK | OK | OK | | ||||||||
| palomino4 | Windows Server 2022 Datacenter / x64 | OK | OK | OK | OK | | ||||||||
| lconway | macOS 12.6.5 Monterey / x86_64 | OK | OK | OK | OK | | ||||||||
| kjohnson1 | macOS 13.6.1 Ventura / arm64 | see weekly results here | ||||||||||||
| kunpeng2 | Linux (openEuler 22.03 LTS-SP1) / aarch64 | OK | ERROR | skipped | ||||||||||
|
To the developers/maintainers of the VAExprs package: - Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/VAExprs.git to reflect on this report. See Troubleshooting Build Report for more information. - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information. - See Martin Grigorov's blog post for how to debug Linux ARM64 related issues on a x86_64 host. |
| Package: VAExprs |
| Version: 1.8.0 |
| Command: /home/biocbuild/R/R-4.3.1/bin/R CMD build --keep-empty-dirs --no-resave-data VAExprs |
| StartedAt: 2023-11-02 07:20:11 -0000 (Thu, 02 Nov 2023) |
| EndedAt: 2023-11-02 07:21:36 -0000 (Thu, 02 Nov 2023) |
| EllapsedTime: 84.6 seconds |
| RetCode: 1 |
| Status: ERROR |
| PackageFile: None |
| PackageFileSize: NA |
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### Running command:
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### /home/biocbuild/R/R-4.3.1/bin/R CMD build --keep-empty-dirs --no-resave-data VAExprs
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* checking for file ‘VAExprs/DESCRIPTION’ ... OK
* preparing ‘VAExprs’:
* checking DESCRIPTION meta-information ... OK
* installing the package to build vignettes
* creating vignettes ... ERROR
--- re-building ‘VAExprs.Rmd’ using rmarkdown
WARNING:tensorflow:OMP_NUM_THREADS is no longer used by the default Keras config. To configure the number of threads, use tf.config.threading APIs.
2023-11-02 07:21:27.583374: W tensorflow/c/c_api.cc:300] Operation '{name:'dense_2/bias/Assign' id:130 op device:{requested: '', assigned: ''} def:{{{node dense_2/bias/Assign}} = AssignVariableOp[_has_manual_control_dependencies=true, dtype=DT_FLOAT, validate_shape=false](dense_2/bias, dense_2/bias/Initializer/zeros)}}' was changed by setting attribute after it was run by a session. This mutation will have no effect, and will trigger an error in the future. Either don't modify nodes after running them or create a new session.
/usr/local/lib/python3.9/site-packages/keras/engine/training_v1.py:2335: UserWarning: `Model.state_updates` will be removed in a future version. This property should not be used in TensorFlow 2.0, as `updates` are applied automatically.
updates = self.state_updates
2023-11-02 07:21:27.978395: W tensorflow/c/c_api.cc:300] Operation '{name:'loss/mul' id:206 op device:{requested: '', assigned: ''} def:{{{node loss/mul}} = Mul[T=DT_FLOAT, _has_manual_control_dependencies=true](loss/mul/x, loss/dense_2_loss/value)}}' was changed by setting attribute after it was run by a session. This mutation will have no effect, and will trigger an error in the future. Either don't modify nodes after running them or create a new session.