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This page was generated on 2023-11-02 11:41:19 -0400 (Thu, 02 Nov 2023).

HostnameOSArch (*)R versionInstalled pkgs
nebbiolo2Linux (Ubuntu 22.04.2 LTS)x86_644.3.1 (2023-06-16) -- "Beagle Scouts" 4729
palomino4Windows Server 2022 Datacenterx644.3.1 (2023-06-16 ucrt) -- "Beagle Scouts" 4463
lconwaymacOS 12.6.5 Montereyx86_644.3.1 Patched (2023-06-17 r84564) -- "Beagle Scouts" 4478
kunpeng2Linux (openEuler 22.03 LTS-SP1)aarch644.3.1 (2023-06-16) -- "Beagle Scouts" 4464
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

Package 2030/2266HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
SpliceWiz 1.4.0  (landing page)
Alex Chit Hei Wong
Snapshot Date: 2023-11-01 14:05:06 -0400 (Wed, 01 Nov 2023)
git_url: https://git.bioconductor.org/packages/SpliceWiz
git_branch: RELEASE_3_18
git_last_commit: f426759
git_last_commit_date: 2023-10-24 11:42:48 -0400 (Tue, 24 Oct 2023)
nebbiolo2Linux (Ubuntu 22.04.2 LTS) / x86_64  OK    OK    OK  UNNEEDED, same version is already published
palomino4Windows Server 2022 Datacenter / x64  OK    OK    OK    OK  UNNEEDED, same version is already published
lconwaymacOS 12.6.5 Monterey / x86_64  OK    OK    OK    OK  UNNEEDED, same version is already published
kjohnson1macOS 13.6.1 Ventura / arm64see weekly results here
kunpeng2Linux (openEuler 22.03 LTS-SP1) / aarch64  OK    ERROR  skipped

INSTALL results for SpliceWiz on kunpeng2


To the developers/maintainers of the SpliceWiz package:
- Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/SpliceWiz.git to reflect on this report. See Troubleshooting Build Report for more information.
- Use the following Renviron settings to reproduce errors and warnings.
- If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information.
- See Martin Grigorov's blog post for how to debug Linux ARM64 related issues on a x86_64 host.

raw results


Summary

Package: SpliceWiz
Version: 1.4.0
Command: /home/biocbuild/R/R-4.3.1/bin/R CMD INSTALL SpliceWiz
StartedAt: 2023-11-01 21:04:19 -0000 (Wed, 01 Nov 2023)
EndedAt: 2023-11-01 21:07:24 -0000 (Wed, 01 Nov 2023)
EllapsedTime: 185.0 seconds
RetCode: 0
Status:   OK  

Command output

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###
### Running command:
###
###   /home/biocbuild/R/R-4.3.1/bin/R CMD INSTALL SpliceWiz
###
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* installing to library ‘/home/biocbuild/R/R-4.3.1/site-library’
* installing *source* package ‘SpliceWiz’ ...
** using staged installation
** libs
using C++ compiler: ‘g++ (GCC) 10.3.1’
using C++11
g++ -std=gnu++11 -I"/home/biocbuild/R/R-4.3.1/include" -DNDEBUG  -I'/home/biocbuild/R/R-4.3.1/site-library/ompBAM/include' -I'/home/biocbuild/R/R-4.3.1/site-library/Rcpp/include' -I'/home/biocbuild/R/R-4.3.1/site-library/zlibbioc/include' -I'/home/biocbuild/R/R-4.3.1/site-library/RcppProgress/include' -I/usr/local/include   -fopenmp -DSPLICEWIZ -fPIC  -g -O2  -Wall -c BAM2blocks.cpp -o BAM2blocks.o
g++ -std=gnu++11 -I"/home/biocbuild/R/R-4.3.1/include" -DNDEBUG  -I'/home/biocbuild/R/R-4.3.1/site-library/ompBAM/include' -I'/home/biocbuild/R/R-4.3.1/site-library/Rcpp/include' -I'/home/biocbuild/R/R-4.3.1/site-library/zlibbioc/include' -I'/home/biocbuild/R/R-4.3.1/site-library/RcppProgress/include' -I/usr/local/include   -fopenmp -DSPLICEWIZ -fPIC  -g -O2  -Wall -c FastaReader.cpp -o FastaReader.o
g++ -std=gnu++11 -I"/home/biocbuild/R/R-4.3.1/include" -DNDEBUG  -I'/home/biocbuild/R/R-4.3.1/site-library/ompBAM/include' -I'/home/biocbuild/R/R-4.3.1/site-library/Rcpp/include' -I'/home/biocbuild/R/R-4.3.1/site-library/zlibbioc/include' -I'/home/biocbuild/R/R-4.3.1/site-library/RcppProgress/include' -I/usr/local/include   -fopenmp -DSPLICEWIZ -fPIC  -g -O2  -Wall -c FragmentBlocks.cpp -o FragmentBlocks.o
g++ -std=gnu++11 -I"/home/biocbuild/R/R-4.3.1/include" -DNDEBUG  -I'/home/biocbuild/R/R-4.3.1/site-library/ompBAM/include' -I'/home/biocbuild/R/R-4.3.1/site-library/Rcpp/include' -I'/home/biocbuild/R/R-4.3.1/site-library/zlibbioc/include' -I'/home/biocbuild/R/R-4.3.1/site-library/RcppProgress/include' -I/usr/local/include   -fopenmp -DSPLICEWIZ -fPIC  -g -O2  -Wall -c GZTools.cpp -o GZTools.o
g++ -std=gnu++11 -I"/home/biocbuild/R/R-4.3.1/include" -DNDEBUG  -I'/home/biocbuild/R/R-4.3.1/site-library/ompBAM/include' -I'/home/biocbuild/R/R-4.3.1/site-library/Rcpp/include' -I'/home/biocbuild/R/R-4.3.1/site-library/zlibbioc/include' -I'/home/biocbuild/R/R-4.3.1/site-library/RcppProgress/include' -I/usr/local/include   -fopenmp -DSPLICEWIZ -fPIC  -g -O2  -Wall -c RcppExports.cpp -o RcppExports.o
g++ -std=gnu++11 -I"/home/biocbuild/R/R-4.3.1/include" -DNDEBUG  -I'/home/biocbuild/R/R-4.3.1/site-library/ompBAM/include' -I'/home/biocbuild/R/R-4.3.1/site-library/Rcpp/include' -I'/home/biocbuild/R/R-4.3.1/site-library/zlibbioc/include' -I'/home/biocbuild/R/R-4.3.1/site-library/RcppProgress/include' -I/usr/local/include   -fopenmp -DSPLICEWIZ -fPIC  -g -O2  -Wall -c ReadBlockProcessor.cpp -o ReadBlockProcessor.o
g++ -std=gnu++11 -I"/home/biocbuild/R/R-4.3.1/include" -DNDEBUG  -I'/home/biocbuild/R/R-4.3.1/site-library/ompBAM/include' -I'/home/biocbuild/R/R-4.3.1/site-library/Rcpp/include' -I'/home/biocbuild/R/R-4.3.1/site-library/zlibbioc/include' -I'/home/biocbuild/R/R-4.3.1/site-library/RcppProgress/include' -I/usr/local/include   -fopenmp -DSPLICEWIZ -fPIC  -g -O2  -Wall -c ReadBlockProcessor_CoverageBlocks.cpp -o ReadBlockProcessor_CoverageBlocks.o
g++ -std=gnu++11 -I"/home/biocbuild/R/R-4.3.1/include" -DNDEBUG  -I'/home/biocbuild/R/R-4.3.1/site-library/ompBAM/include' -I'/home/biocbuild/R/R-4.3.1/site-library/Rcpp/include' -I'/home/biocbuild/R/R-4.3.1/site-library/zlibbioc/include' -I'/home/biocbuild/R/R-4.3.1/site-library/RcppProgress/include' -I/usr/local/include   -fopenmp -DSPLICEWIZ -fPIC  -g -O2  -Wall -c ReadBlockProcessor_FragmentsMap.cpp -o ReadBlockProcessor_FragmentsMap.o
g++ -std=gnu++11 -I"/home/biocbuild/R/R-4.3.1/include" -DNDEBUG  -I'/home/biocbuild/R/R-4.3.1/site-library/ompBAM/include' -I'/home/biocbuild/R/R-4.3.1/site-library/Rcpp/include' -I'/home/biocbuild/R/R-4.3.1/site-library/zlibbioc/include' -I'/home/biocbuild/R/R-4.3.1/site-library/RcppProgress/include' -I/usr/local/include   -fopenmp -DSPLICEWIZ -fPIC  -g -O2  -Wall -c ReadBlockProcessor_TandemJunctions.cpp -o ReadBlockProcessor_TandemJunctions.o
g++ -std=gnu++11 -I"/home/biocbuild/R/R-4.3.1/include" -DNDEBUG  -I'/home/biocbuild/R/R-4.3.1/site-library/ompBAM/include' -I'/home/biocbuild/R/R-4.3.1/site-library/Rcpp/include' -I'/home/biocbuild/R/R-4.3.1/site-library/zlibbioc/include' -I'/home/biocbuild/R/R-4.3.1/site-library/RcppProgress/include' -I/usr/local/include   -fopenmp -DSPLICEWIZ -fPIC  -g -O2  -Wall -c covTools.cpp -o covTools.o
g++ -std=gnu++11 -I"/home/biocbuild/R/R-4.3.1/include" -DNDEBUG  -I'/home/biocbuild/R/R-4.3.1/site-library/ompBAM/include' -I'/home/biocbuild/R/R-4.3.1/site-library/Rcpp/include' -I'/home/biocbuild/R/R-4.3.1/site-library/zlibbioc/include' -I'/home/biocbuild/R/R-4.3.1/site-library/RcppProgress/include' -I/usr/local/include   -fopenmp -DSPLICEWIZ -fPIC  -g -O2  -Wall -c main.cpp -o main.o
g++ -std=gnu++11 -I"/home/biocbuild/R/R-4.3.1/include" -DNDEBUG  -I'/home/biocbuild/R/R-4.3.1/site-library/ompBAM/include' -I'/home/biocbuild/R/R-4.3.1/site-library/Rcpp/include' -I'/home/biocbuild/R/R-4.3.1/site-library/zlibbioc/include' -I'/home/biocbuild/R/R-4.3.1/site-library/RcppProgress/include' -I/usr/local/include   -fopenmp -DSPLICEWIZ -fPIC  -g -O2  -Wall -c swEngine.cpp -o swEngine.o
g++ -std=gnu++11 -I"/home/biocbuild/R/R-4.3.1/include" -DNDEBUG  -I'/home/biocbuild/R/R-4.3.1/site-library/ompBAM/include' -I'/home/biocbuild/R/R-4.3.1/site-library/Rcpp/include' -I'/home/biocbuild/R/R-4.3.1/site-library/zlibbioc/include' -I'/home/biocbuild/R/R-4.3.1/site-library/RcppProgress/include' -I/usr/local/include   -fopenmp -DSPLICEWIZ -fPIC  -g -O2  -Wall -c synthReadGenerator.cpp -o synthReadGenerator.o
g++ -std=gnu++11 -shared -L/home/biocbuild/R/R-4.3.1/lib -L/usr/local/lib -o SpliceWiz.so BAM2blocks.o FastaReader.o FragmentBlocks.o GZTools.o RcppExports.o ReadBlockProcessor.o ReadBlockProcessor_CoverageBlocks.o ReadBlockProcessor_FragmentsMap.o ReadBlockProcessor_TandemJunctions.o covTools.o main.o swEngine.o synthReadGenerator.o -fopenmp -DSPLICEWIZ -L/home/biocbuild/R/R-4.3.1/lib -lR
installing to /home/biocbuild/R/R-4.3.1/site-library/00LOCK-SpliceWiz/00new/SpliceWiz/libs
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (SpliceWiz)