Vladimir Kiselev
| Snapshot Date: 2023-11-01 14:05:06 -0400 (Wed, 01 Nov 2023) |
| git_url: https://git.bioconductor.org/packages/SC3 |
| git_branch: RELEASE_3_18 |
| git_last_commit: 9bcd7ee |
| git_last_commit_date: 2023-10-24 10:47:03 -0400 (Tue, 24 Oct 2023) |
| Back to Multiple platform build/check report for BioC 3.18: simplified long |
|
This page was generated on 2023-11-02 11:41:13 -0400 (Thu, 02 Nov 2023).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| nebbiolo2 | Linux (Ubuntu 22.04.2 LTS) | x86_64 | 4.3.1 (2023-06-16) -- "Beagle Scouts" | 4729 |
| palomino4 | Windows Server 2022 Datacenter | x64 | 4.3.1 (2023-06-16 ucrt) -- "Beagle Scouts" | 4463 |
| lconway | macOS 12.6.5 Monterey | x86_64 | 4.3.1 Patched (2023-06-17 r84564) -- "Beagle Scouts" | 4478 |
| kunpeng2 | Linux (openEuler 22.03 LTS-SP1) | aarch64 | 4.3.1 (2023-06-16) -- "Beagle Scouts" | 4464 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
| Package 1846/2266 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| SC3 1.30.0 (landing page) Vladimir Kiselev
| nebbiolo2 | Linux (Ubuntu 22.04.2 LTS) / x86_64 | OK | OK | OK | | ||||||||
| palomino4 | Windows Server 2022 Datacenter / x64 | OK | OK | OK | OK | | ||||||||
| lconway | macOS 12.6.5 Monterey / x86_64 | OK | OK | OK | OK | | ||||||||
| kjohnson1 | macOS 13.6.1 Ventura / arm64 | see weekly results here | ||||||||||||
| kunpeng2 | Linux (openEuler 22.03 LTS-SP1) / aarch64 | OK | ERROR | skipped | ||||||||||
|
To the developers/maintainers of the SC3 package: - Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/SC3.git to reflect on this report. See Troubleshooting Build Report for more information. - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information. - See Martin Grigorov's blog post for how to debug Linux ARM64 related issues on a x86_64 host. |
| Package: SC3 |
| Version: 1.30.0 |
| Command: /home/biocbuild/R/R-4.3.1/bin/R CMD build --keep-empty-dirs --no-resave-data SC3 |
| StartedAt: 2023-11-02 05:40:47 -0000 (Thu, 02 Nov 2023) |
| EndedAt: 2023-11-02 05:45:35 -0000 (Thu, 02 Nov 2023) |
| EllapsedTime: 288.3 seconds |
| RetCode: 1 |
| Status: ERROR |
| PackageFile: None |
| PackageFileSize: NA |
############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/R/R-4.3.1/bin/R CMD build --keep-empty-dirs --no-resave-data SC3 ### ############################################################################## ############################################################################## * checking for file ‘SC3/DESCRIPTION’ ... OK * preparing ‘SC3’: * checking DESCRIPTION meta-information ... OK * cleaning src * installing the package to build vignettes * creating vignettes ... ERROR --- re-building ‘SC3.Rmd’ using rmarkdown starting worker pid=21928 on localhost:11050 at 05:42:10.000 starting worker pid=21927 on localhost:11050 at 05:42:10.003 starting worker pid=21929 on localhost:11050 at 05:42:10.014 Loading required package: SC3 Loading required package: SC3 Loading required package: SC3 loaded SC3 and set parent environment Loading required package: foreach Loading required package: rngtools loaded SC3 and set parent environment Loading required package: foreach Loading required package: rngtools loaded SC3 and set parent environment Loading required package: foreach Loading required package: rngtools starting worker pid=22448 on localhost:11050 at 05:42:25.922 starting worker pid=22446 on localhost:11050 at 05:42:25.923 starting worker pid=22444 on localhost:11050 at 05:42:25.926 starting worker pid=22447 on localhost:11050 at 05:42:25.927 starting worker pid=22449 on localhost:11050 at 05:42:25.927 starting worker pid=22445 on localhost:11050 at 05:42:25.928 Loading required package: SC3 Loading required package: SC3 Loading required package: SC3 Loading required package: SC3 Loading required package: SC3 Loading required package: SC3 loaded SC3 and set parent environment loaded SC3 and set parent environment Loading required package: foreach Loading required package: foreach Loading required package: rngtools Loading required package: rngtools loaded SC3 and set parent environment Loading required package: foreach Loading required package: rngtools loaded SC3 and set parent environment Loading required package: foreach Loading required package: rngtools loaded SC3 and set parent environment Loading required package: foreach Loading required package: rngtools loaded SC3 and set parent environment Loading required package: foreach Loading required package: rngtools starting worker pid=22630 on localhost:11050 at 05:42:37.487 starting worker pid=22621 on localhost:11050 at 05:42:37.525 starting worker pid=22625 on 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set parent environment loaded SC3 and set parent environment loaded SC3 and set parent environment loaded SC3 and set parent environment loaded SC3 and set parent environment loaded SC3 and set parent environment loaded SC3 and set parent environment loaded SC3 and set parent environment Loading required package: foreach Loading required package: foreach Loading required package: foreach Loading required package: foreach Loading required package: foreach Loading required package: foreach Loading required package: foreach Loading required package: foreach loaded SC3 and set parent environment Loading required package: foreach loaded SC3 and set parent environment Loading required package: foreach Loading required package: foreach Loading required package: foreach Loading required package: foreach Loading required package: foreach Loading required package: foreach Loading required package: foreach loaded SC3 and set parent environment Loading required package: foreach Loading required 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|===================================================================== | 99% | |======================================================================| 100%starting worker pid=23688 on localhost:11050 at 05:43:11.883 starting worker pid=23687 on localhost:11050 at 05:43:11.883 starting worker pid=23686 on localhost:11050 at 05:43:11.883 Loading required package: SC3 Loading required package: SC3 Loading required package: SC3 loaded SC3 and set parent environment loaded SC3 and set parent environment Loading required package: foreach Loading required package: foreach Loading required package: rngtools Loading required package: rngtools loaded SC3 and set parent environment Loading required package: foreach Loading required package: rngtools starting worker pid=23855 on localhost:11050 at 05:43:22.992 starting worker pid=23861 on localhost:11050 at 05:43:22.992 starting worker pid=23858 on localhost:11050 at 05:43:22.993 starting worker pid=23863 on localhost:11050 at 05:43:22.997 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rngtools loaded SC3 and set parent environment loaded SC3 and set parent environment Loading required package: foreach Loading required package: foreach Loading required package: rngtools Loading required package: rngtools loaded SC3 and set parent environment Loading required package: foreach Loading required package: rngtools loaded SC3 and set parent environment Loading required package: foreach Loading required package: rngtools loaded SC3 and set parent environment Loading required package: foreach Loading required package: rngtools starting worker pid=25414 on localhost:11050 at 05:44:48.650 starting worker pid=25416 on localhost:11050 at 05:44:48.650 starting worker pid=25415 on localhost:11050 at 05:44:48.653 Loading required package: SC3 Loading required package: SC3 Loading required package: SC3 loaded SC3 and set parent environment Loading required package: foreach Loading required package: rngtools loaded SC3 and set parent environment Loading required package: foreach 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