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This page was generated on 2023-11-02 11:41:09 -0400 (Thu, 02 Nov 2023).

HostnameOSArch (*)R versionInstalled pkgs
nebbiolo2Linux (Ubuntu 22.04.2 LTS)x86_644.3.1 (2023-06-16) -- "Beagle Scouts" 4729
palomino4Windows Server 2022 Datacenterx644.3.1 (2023-06-16 ucrt) -- "Beagle Scouts" 4463
lconwaymacOS 12.6.5 Montereyx86_644.3.1 Patched (2023-06-17 r84564) -- "Beagle Scouts" 4478
kunpeng2Linux (openEuler 22.03 LTS-SP1)aarch644.3.1 (2023-06-16) -- "Beagle Scouts" 4464
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

Package 1704/2266HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
RedeR 2.6.0  (landing page)
Mauro Castro
Snapshot Date: 2023-11-01 14:05:06 -0400 (Wed, 01 Nov 2023)
git_url: https://git.bioconductor.org/packages/RedeR
git_branch: RELEASE_3_18
git_last_commit: a311443
git_last_commit_date: 2023-10-24 09:47:21 -0400 (Tue, 24 Oct 2023)
nebbiolo2Linux (Ubuntu 22.04.2 LTS) / x86_64  OK    OK    OK  UNNEEDED, same version is already published
palomino4Windows Server 2022 Datacenter / x64  OK    OK    OK    OK  UNNEEDED, same version is already published
lconwaymacOS 12.6.5 Monterey / x86_64  OK    OK    OK    OK  UNNEEDED, same version is already published
kjohnson1macOS 13.6.1 Ventura / arm64see weekly results here
kunpeng2Linux (openEuler 22.03 LTS-SP1) / aarch64  OK    OK    OK  

CHECK results for RedeR on kunpeng2


To the developers/maintainers of the RedeR package:
- Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/RedeR.git to reflect on this report. See Troubleshooting Build Report for more information.
- Use the following Renviron settings to reproduce errors and warnings.
- If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information.
- See Martin Grigorov's blog post for how to debug Linux ARM64 related issues on a x86_64 host.

raw results


Summary

Package: RedeR
Version: 2.6.0
Command: /home/biocbuild/R/R-4.3.1/bin/R CMD check --install=check:RedeR.install-out.txt --library=/home/biocbuild/R/R-4.3.1/site-library --no-vignettes --timings RedeR_2.6.0.tar.gz
StartedAt: 2023-11-02 13:33:23 -0000 (Thu, 02 Nov 2023)
EndedAt: 2023-11-02 13:34:06 -0000 (Thu, 02 Nov 2023)
EllapsedTime: 43.1 seconds
RetCode: 0
Status:   OK  
CheckDir: RedeR.Rcheck
Warnings: 0

Command output

##############################################################################
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###
### Running command:
###
###   /home/biocbuild/R/R-4.3.1/bin/R CMD check --install=check:RedeR.install-out.txt --library=/home/biocbuild/R/R-4.3.1/site-library --no-vignettes --timings RedeR_2.6.0.tar.gz
###
##############################################################################
##############################################################################


* using log directory ‘/home/biocbuild/bbs-3.18-bioc/meat/RedeR.Rcheck’
* using R version 4.3.1 (2023-06-16)
* using platform: aarch64-unknown-linux-gnu (64-bit)
* R was compiled by
    gcc (GCC) 10.3.1
    GNU Fortran (GCC) 10.3.1
* running under: openEuler 22.03 (LTS-SP1)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘RedeR/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘RedeR’ version ‘2.6.0’
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘RedeR’ can be installed ... OK
* checking installed package size ... NOTE
  installed size is  5.6Mb
  sub-directories of 1Mb or more:
    data   3.2Mb
    java   1.8Mb
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking loading without being on the library search path ... OK
* checking startup messages can be suppressed ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in ‘inst/doc’ ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE

Status: 1 NOTE
See
  ‘/home/biocbuild/bbs-3.18-bioc/meat/RedeR.Rcheck/00check.log’
for details.



Installation output

RedeR.Rcheck/00install.out

##############################################################################
##############################################################################
###
### Running command:
###
###   /home/biocbuild/R/R-4.3.1/bin/R CMD INSTALL RedeR
###
##############################################################################
##############################################################################


* installing to library ‘/home/biocbuild/R/R-4.3.1/site-library’
* installing *source* package ‘RedeR’ ...
** using staged installation
** R
** data
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (RedeR)

Tests output


Example timings

RedeR.Rcheck/RedeR-Ex.timings

nameusersystemelapsed
RedPort-class0.0060.0010.006
RedPort0.0010.0000.002
RedeR.data0.4480.0110.461
addEdgeBetweenContainers0.0170.0000.016
addEdges0.0120.0000.012
addGraph0.0070.0040.012
addLegend0.0110.0000.011
addNodes0.0930.0000.093
att0.0680.0000.069
calld0.0020.0000.002
cea0.0370.0040.041
deSelectEdges0.0110.0000.011
deSelectGraph0.0110.0000.012
deSelectNodes0.0110.0000.011
deleteEdges0.0110.0000.011
deleteNodes0.0110.0000.011
deleteSelectedEdges0.0110.0000.011
deleteSelectedNodes0.0120.0000.012
exitd0.0020.0000.002
getContainerComponets0.0050.0070.012
getEdgeIDs0.0080.0040.012
getEdges0.0120.0000.011
getGraph0.0050.0080.013
getNodeIDs0.0120.0000.012
getNodes0.0080.0040.012
getSourceEdgeIDs0.0130.0000.012
getTargetEdgeIDs0.0120.0000.012
gtoy.rm000
isRelaxActive0.0020.0000.002
mergeNodes0.0120.0000.012
mergeOutEdges0.0120.0010.013
nestNodes0.0110.0010.013
nesthc1.3300.0921.425
ping0.0030.0000.002
relax0.0130.0000.012
resetd0.0020.0000.002
selectAllEdges0.0120.0000.012
selectAllNodes0.0130.0000.012
selectEdges0.0130.0000.012
selectGraph0.0120.0000.011
selectNodes0.0120.0000.012
setArrowDirection0.0230.0000.023
subg0.0710.0040.076
updateContainerSize0.0120.0000.012
updateCoordXY0.0130.0000.012
updateGraph0.0110.0000.011
version0.0020.0000.002