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This page was generated on 2023-11-02 11:40:42 -0400 (Thu, 02 Nov 2023).

HostnameOSArch (*)R versionInstalled pkgs
nebbiolo2Linux (Ubuntu 22.04.2 LTS)x86_644.3.1 (2023-06-16) -- "Beagle Scouts" 4729
palomino4Windows Server 2022 Datacenterx644.3.1 (2023-06-16 ucrt) -- "Beagle Scouts" 4463
lconwaymacOS 12.6.5 Montereyx86_644.3.1 Patched (2023-06-17 r84564) -- "Beagle Scouts" 4478
kunpeng2Linux (openEuler 22.03 LTS-SP1)aarch644.3.1 (2023-06-16) -- "Beagle Scouts" 4464
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

Package 756/2266HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
FunChIP 1.28.0  (landing page)
Alice Parodi
Snapshot Date: 2023-11-01 14:05:06 -0400 (Wed, 01 Nov 2023)
git_url: https://git.bioconductor.org/packages/FunChIP
git_branch: RELEASE_3_18
git_last_commit: ee9b6c9
git_last_commit_date: 2023-10-24 10:50:38 -0400 (Tue, 24 Oct 2023)
nebbiolo2Linux (Ubuntu 22.04.2 LTS) / x86_64  OK    OK    WARNINGS  UNNEEDED, same version is already published
palomino4Windows Server 2022 Datacenter / x64  OK    OK    WARNINGS    OK  UNNEEDED, same version is already published
lconwaymacOS 12.6.5 Monterey / x86_64  OK    OK    OK    OK  UNNEEDED, same version is already published
kjohnson1macOS 13.6.1 Ventura / arm64see weekly results here
kunpeng2Linux (openEuler 22.03 LTS-SP1) / aarch64  OK    OK    WARNINGS  

INSTALL results for FunChIP on kunpeng2


To the developers/maintainers of the FunChIP package:
- Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/FunChIP.git to reflect on this report. See Troubleshooting Build Report for more information.
- Use the following Renviron settings to reproduce errors and warnings.
- If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information.
- See Martin Grigorov's blog post for how to debug Linux ARM64 related issues on a x86_64 host.

raw results


Summary

Package: FunChIP
Version: 1.28.0
Command: /home/biocbuild/R/R-4.3.1/bin/R CMD INSTALL FunChIP
StartedAt: 2023-11-01 21:02:29 -0000 (Wed, 01 Nov 2023)
EndedAt: 2023-11-01 21:03:23 -0000 (Wed, 01 Nov 2023)
EllapsedTime: 53.5 seconds
RetCode: 0
Status:   OK  

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   /home/biocbuild/R/R-4.3.1/bin/R CMD INSTALL FunChIP
###
##############################################################################
##############################################################################


* installing to library ‘/home/biocbuild/R/R-4.3.1/site-library’
* installing *source* package ‘FunChIP’ ...
** using staged installation
** libs
using C++ compiler: ‘g++ (GCC) 10.3.1’
using C++11
g++ -std=gnu++11 -I"/home/biocbuild/R/R-4.3.1/include" -DNDEBUG  -I'/home/biocbuild/R/R-4.3.1/site-library/Rcpp/include' -I/usr/local/include   `/home/biocbuild/R/R-4.3.1/bin/Rscript -e "Rcpp:::CxxFlags()"` -fPIC  -g -O2  -Wall -c kmean_function.cpp -o kmean_function.o
kmean_function.cpp: In function ‘SEXPREC* kmean_function(SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP)’:
kmean_function.cpp:74:31: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
   74 |     for (unsigned int i =0 ; i<num_data; i++){
      |                              ~^~~~~~~~~
kmean_function.cpp:80:34: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
   80 |       for (unsigned int t =0 ; t < num_points; t++)
      |                                ~~^~~~~~~~~~~~
kmean_function.cpp: In function ‘SEXPREC* distance_matrix(SEXP, SEXP, SEXP, SEXP, SEXP)’:
kmean_function.cpp:210:35: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
  210 |         for (unsigned int i =0 ; i<num_data; i++){
      |                                  ~^~~~~~~~~
kmean_function.cpp:216:40: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
  216 |             for (unsigned int t =0 ; t < num_points; t++)
      |                                      ~~^~~~~~~~~~~~
kmean_function.cpp: In function ‘void kma_discrete(std::vector<peak>&, const int&, std::vector<int>&, const double&, const double&, const int&, const char&, const double&, const double&, std::vector<int>&, std::vector<double>&, std::vector<int>&, const double&, const double&, int, char, char)’:
kmean_function.cpp:638:51: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<peak>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  638 |   while( iter < iter_max and number_distances_low < dati.size()  and cluster_vuoti==0){  //and number_clusters_different > 0
      |                              ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~
kmean_function.cpp:677:52: warning: suggest parentheses around comparison in operand of ‘&’ [-Wparentheses]
  677 |       if ( (unsigned int)number_clusters_different == dati.size() & iter != 1)
      |            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~
kmean_function.cpp:681:31: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<peak>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  681 |       if (number_distances_low== dati.size())
      |           ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~
kmean_function.cpp: In function ‘void normalize_data(std::vector<int>&, std::vector<int>&, const int&)’:
kmean_function.cpp:759:27: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘const int’ [-Wsign-compare]
  759 |   for (unsigned int i=0; i<n_clust; i++)
      |                          ~^~~~~~~~
In file included from kmean_function.cpp:1:
peak.h: In member function ‘std::vector<double> peak::area(int, char) const’:
peak.h:154:46: warning: ‘D’ may be used uninitialized in this function [-Wmaybe-uninitialized]
  154 |                 area_def[0] = sqrt(area[0]/2)/D;
      |                               ~~~~~~~~~~~~~~~^~
g++ -std=gnu++11 -shared -L/home/biocbuild/R/R-4.3.1/lib -L/usr/local/lib -o FunChIP.so kmean_function.o -L/home/biocbuild/R/R-4.3.1/lib -lR
installing to /home/biocbuild/R/R-4.3.1/site-library/00LOCK-FunChIP/00new/FunChIP/libs
** R
** data
*** moving datasets to lazyload DB
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (FunChIP)