Back to Multiple platform build/check report for BioC 3.18: simplified long |
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This page was generated on 2023-11-14 11:36:29 -0500 (Tue, 14 Nov 2023).
Hostname | OS | Arch (*) | R version | Installed pkgs |
---|---|---|---|---|
nebbiolo2 | Linux (Ubuntu 22.04.2 LTS) | x86_64 | 4.3.2 (2023-10-31) -- "Eye Holes" | 4680 |
palomino4 | Windows Server 2022 Datacenter | x64 | 4.3.2 (2023-10-31 ucrt) -- "Eye Holes" | 4413 |
lconway | macOS 12.6.5 Monterey | x86_64 | 4.3.2 Patched (2023-11-01 r85457) -- "Eye Holes" | 4432 |
Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X |
Package 441/2266 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
CoSIA 1.2.0 (landing page) Amanda D. Clark
| nebbiolo2 | Linux (Ubuntu 22.04.2 LTS) / x86_64 | OK | OK | OK | |||||||||
palomino4 | Windows Server 2022 Datacenter / x64 | OK | OK | OK | OK | |||||||||
lconway | macOS 12.6.5 Monterey / x86_64 | OK | OK | OK | OK | |||||||||
kjohnson1 | macOS 13.6.1 Ventura / arm64 | see weekly results here | ||||||||||||
To the developers/maintainers of the CoSIA package: - Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/CoSIA.git to reflect on this report. See Troubleshooting Build Report for more information. - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information. |
Package: CoSIA |
Version: 1.2.0 |
Command: F:\biocbuild\bbs-3.18-bioc\R\bin\R.exe CMD check --no-multiarch --install=check:CoSIA.install-out.txt --library=F:\biocbuild\bbs-3.18-bioc\R\library --no-vignettes --timings CoSIA_1.2.0.tar.gz |
StartedAt: 2023-11-14 00:34:50 -0500 (Tue, 14 Nov 2023) |
EndedAt: 2023-11-14 00:44:16 -0500 (Tue, 14 Nov 2023) |
EllapsedTime: 565.7 seconds |
RetCode: 0 |
Status: OK |
CheckDir: CoSIA.Rcheck |
Warnings: 0 |
############################################################################## ############################################################################## ### ### Running command: ### ### F:\biocbuild\bbs-3.18-bioc\R\bin\R.exe CMD check --no-multiarch --install=check:CoSIA.install-out.txt --library=F:\biocbuild\bbs-3.18-bioc\R\library --no-vignettes --timings CoSIA_1.2.0.tar.gz ### ############################################################################## ############################################################################## * using log directory 'F:/biocbuild/bbs-3.18-bioc/meat/CoSIA.Rcheck' * using R version 4.3.2 (2023-10-31 ucrt) * using platform: x86_64-w64-mingw32 (64-bit) * R was compiled by gcc.exe (GCC) 12.3.0 GNU Fortran (GCC) 12.3.0 * running under: Windows Server 2022 x64 (build 20348) * using session charset: UTF-8 * using option '--no-vignettes' * checking for file 'CoSIA/DESCRIPTION' ... OK * checking extension type ... Package * this is package 'CoSIA' version '1.2.0' * package encoding: UTF-8 * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking whether package 'CoSIA' can be installed ... OK * checking installed package size ... OK * checking package directory ... OK * checking 'build' directory ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking R files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... OK * checking whether the package can be loaded with stated dependencies ... OK * checking whether the package can be unloaded cleanly ... OK * checking whether the namespace can be loaded with stated dependencies ... OK * checking whether the namespace can be unloaded cleanly ... OK * checking dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... OK * checking Rd files ... OK * checking Rd metadata ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking files in 'vignettes' ... OK * checking examples ... OK Examples with CPU (user + system) or elapsed time > 5s user system elapsed plotCVGEx-CoSIAn-method 124.52 4.57 146.05 plotCVGEx 75.26 2.04 77.45 getGEx-CoSIAn-method 31.03 4.07 56.47 plotDSGEx-CoSIAn-method 27.66 1.01 28.77 plotDSGEx 24.36 1.30 25.75 getTissues 23.64 0.47 26.11 plotSpeciesGEx-CoSIAn-method 16.30 0.61 17.00 plotTissueGEx-CoSIAn-method 14.96 0.74 15.77 plotTissueGEx 15.04 0.46 15.67 plotSpeciesGEx 14.14 0.45 14.65 getGExMetrics 7.17 0.31 7.57 getGExMetrics-CoSIAn-method 6.97 0.27 7.30 getGEx 4.80 0.34 5.20 * checking for unstated dependencies in vignettes ... OK * checking package vignettes in 'inst/doc' ... OK * checking running R code from vignettes ... SKIPPED * checking re-building of vignette outputs ... SKIPPED * checking PDF version of manual ... OK * DONE Status: OK
CoSIA.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### F:\biocbuild\bbs-3.18-bioc\R\bin\R.exe CMD INSTALL CoSIA ### ############################################################################## ############################################################################## * installing to library 'F:/biocbuild/bbs-3.18-bioc/R/library' * installing *source* package 'CoSIA' ... ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (CoSIA)
CoSIA.Rcheck/CoSIA-Ex.timings
name | user | system | elapsed | |
CoSIA-constructor | 0 | 0 | 0 | |
getConversion-CoSIAn-method | 4.36 | 0.13 | 4.57 | |
getConversion | 2.51 | 0.12 | 2.64 | |
getGEx-CoSIAn-method | 31.03 | 4.07 | 56.47 | |
getGEx | 4.80 | 0.34 | 5.20 | |
getGExMetrics-CoSIAn-method | 6.97 | 0.27 | 7.30 | |
getGExMetrics | 7.17 | 0.31 | 7.57 | |
getTissues | 23.64 | 0.47 | 26.11 | |
plotCVGEx-CoSIAn-method | 124.52 | 4.57 | 146.05 | |
plotCVGEx | 75.26 | 2.04 | 77.45 | |
plotDSGEx-CoSIAn-method | 27.66 | 1.01 | 28.77 | |
plotDSGEx | 24.36 | 1.30 | 25.75 | |
plotSpeciesGEx-CoSIAn-method | 16.30 | 0.61 | 17.00 | |
plotSpeciesGEx | 14.14 | 0.45 | 14.65 | |
plotTissueGEx-CoSIAn-method | 14.96 | 0.74 | 15.77 | |
plotTissueGEx | 15.04 | 0.46 | 15.67 | |
viewCoSIAn-CoSIAn-method | 0 | 0 | 0 | |
viewCoSIAn | 0.00 | 0.02 | 0.01 | |