| Back to Mac ARM64 build report for BioC 3.17 |
|
This page was generated on 2023-10-20 09:38:06 -0400 (Fri, 20 Oct 2023).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| kjohnson2 | macOS 12.6.1 Monterey | arm64 | 4.3.1 (2023-06-16) -- "Beagle Scouts" | 4347 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
| Package 1256/2230 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| mitoClone2 1.6.0 (landing page) Benjamin Story
| kjohnson2 | macOS 12.6.1 Monterey / arm64 | ERROR | ERROR | skipped | skipped | ||||||||
|
To the developers/maintainers of the mitoClone2 package: - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information. |
| Package: mitoClone2 |
| Version: 1.6.0 |
| Command: /Library/Frameworks/R.framework/Resources/bin/R CMD INSTALL mitoClone2 |
| StartedAt: 2023-10-15 17:16:27 -0400 (Sun, 15 Oct 2023) |
| EndedAt: 2023-10-15 17:16:44 -0400 (Sun, 15 Oct 2023) |
| EllapsedTime: 16.3 seconds |
| RetCode: 1 |
| Status: ERROR |
##############################################################################
##############################################################################
###
### Running command:
###
### /Library/Frameworks/R.framework/Resources/bin/R CMD INSTALL mitoClone2
###
##############################################################################
##############################################################################
* installing to library ‘/Library/Frameworks/R.framework/Versions/4.3-arm64/Resources/library’
* installing *source* package ‘mitoClone2’ ...
** using staged installation
** libs
using C++ compiler: ‘Apple clang version 14.0.0 (clang-1400.0.29.202)’
using SDK: ‘MacOSX11.3.sdk’
clang++ -arch arm64 -std=gnu++17 -D_FILE_OFFSET_BITS=64 ../inst/SCITEpkg/*.cpp -o scite
../inst/SCITEpkg/findBestTrees.cpp:100:141: error: reference to 'sample' is ambiguous
sampleOutput = runMCMCbeta(optimalTrees, errorRates, rep, loops, gamma, moveProbs, n, m, dataMatrix, scoreType, trueParentVec, sampleStep, sample, chi, priorSd, useTreeList, treeType);
^
../inst/SCITEpkg/findBestTrees.cpp:61:6: note: candidate found by name lookup is 'sample'
bool sample = false;
^
/Library/Developer/CommandLineTools/SDKs/MacOSX11.sdk/usr/include/c++/v1/algorithm:3227:17: note: candidate found by name lookup is 'std::sample'
_SampleIterator sample(_PopulationIterator __first,
^
../inst/SCITEpkg/findBestTrees.cpp:289:5: error: reference to 'sample' is ambiguous
sample = true;
^
../inst/SCITEpkg/findBestTrees.cpp:61:6: note: candidate found by name lookup is 'sample'
bool sample = false;
^
/Library/Developer/CommandLineTools/SDKs/MacOSX11.sdk/usr/include/c++/v1/algorithm:3227:17: note: candidate found by name lookup is 'std::sample'
_SampleIterator sample(_PopulationIterator __first,
^
2 errors generated.
../inst/SCITEpkg/mcmcBinTreeMove.cpp:75:1: warning: non-void function does not return a value in all control paths [-Wreturn-type]
}
^
1 warning generated.
make: *** [scite] Error 1
ERROR: compilation failed for package ‘mitoClone2’
* removing ‘/Library/Frameworks/R.framework/Versions/4.3-arm64/Resources/library/mitoClone2’