Back to Mac ARM64 build report for BioC 3.17 |
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This page was generated on 2023-10-20 09:38:05 -0400 (Fri, 20 Oct 2023).
Hostname | OS | Arch (*) | R version | Installed pkgs |
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kjohnson2 | macOS 12.6.1 Monterey | arm64 | 4.3.1 (2023-06-16) -- "Beagle Scouts" | 4347 |
Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X |
Package 1093/2230 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
Keith Sheppard
| kjohnson2 | macOS 12.6.1 Monterey / arm64 | ERROR | ERROR | skipped | skipped | ||||||||
To the developers/maintainers of the maanova package: - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information. |
Package: maanova |
Version: 1.70.0 |
Command: /Library/Frameworks/R.framework/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data maanova |
StartedAt: 2023-10-16 07:57:40 -0400 (Mon, 16 Oct 2023) |
EndedAt: 2023-10-16 07:57:43 -0400 (Mon, 16 Oct 2023) |
EllapsedTime: 3.1 seconds |
RetCode: 1 |
Status: ERROR |
PackageFile: None |
PackageFileSize: NA |
############################################################################## ############################################################################## ### ### Running command: ### ### /Library/Frameworks/R.framework/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data maanova ### ############################################################################## ############################################################################## * checking for file ‘maanova/DESCRIPTION’ ... OK * preparing ‘maanova’: * checking DESCRIPTION meta-information ... OK * cleaning src * installing the package to build vignettes ----------------------------------- * installing *source* package ‘maanova’ ... ** using staged installation ** libs using C compiler: ‘Apple clang version 14.0.0 (clang-1400.0.29.202)’ using SDK: ‘MacOSX11.3.sdk’ clang -arch arm64 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c makeratio.c -o makeratio.o clang -arch arm64 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c masvd.c -o masvd.o In file included from masvd.c:17: ./masvd.h:14:6: error: conflicting types for 'dgesvd_' void F77_NAME(dgesvd)(const char *jobu, const char *jobvt, ^ /Library/Frameworks/R.framework/Resources/include/R_ext/RS.h:81:24: note: expanded from macro 'F77_NAME' #define F77_NAME(x) F77_CALL(x) ^ /Library/Frameworks/R.framework/Resources/include/R_ext/RS.h:77:22: note: expanded from macro 'F77_CALL' # define F77_CALL(x) x ## _ ^ <scratch space>:19:1: note: expanded from here dgesvd_ ^ /Library/Frameworks/R.framework/Resources/include/R_ext/Lapack.h:348:1: note: previous declaration is here F77_NAME(dgesvd)(const char* jobu, const char* jobvt, const int* m, ^ /Library/Frameworks/R.framework/Resources/include/R_ext/RS.h:81:24: note: expanded from macro 'F77_NAME' #define F77_NAME(x) F77_CALL(x) ^ /Library/Frameworks/R.framework/Resources/include/R_ext/RS.h:77:22: note: expanded from macro 'F77_CALL' # define F77_CALL(x) x ## _ ^ <scratch space>:445:1: note: expanded from here dgesvd_ ^ masvd.c:48:24: error: too few arguments to function call, expected 16, have 14 &tmp, &lwork, &info); ^ /Library/Frameworks/R.framework/Resources/include/R_ext/Lapack.h:348:1: note: 'dgesvd_' declared here F77_NAME(dgesvd)(const char* jobu, const char* jobvt, const int* m, ^ /Library/Frameworks/R.framework/Resources/include/R_ext/RS.h:81:24: note: expanded from macro 'F77_NAME' #define F77_NAME(x) F77_CALL(x) ^ /Library/Frameworks/R.framework/Resources/include/R_ext/RS.h:77:22: note: expanded from macro 'F77_CALL' # define F77_CALL(x) x ## _ ^ <scratch space>:445:1: note: expanded from here dgesvd_ ^ masvd.c:58:24: error: too few arguments to function call, expected 16, have 14 work, &lwork, &info); ^ /Library/Frameworks/R.framework/Resources/include/R_ext/Lapack.h:348:1: note: 'dgesvd_' declared here F77_NAME(dgesvd)(const char* jobu, const char* jobvt, const int* m, ^ /Library/Frameworks/R.framework/Resources/include/R_ext/RS.h:81:24: note: expanded from macro 'F77_NAME' #define F77_NAME(x) F77_CALL(x) ^ /Library/Frameworks/R.framework/Resources/include/R_ext/RS.h:77:22: note: expanded from macro 'F77_CALL' # define F77_CALL(x) x ## _ ^ <scratch space>:445:1: note: expanded from here dgesvd_ ^ masvd.c:72:31: error: too few arguments to function call, expected 15, have 14 &tmp, &lwork, iwork, &info); ^ /Library/Frameworks/R.framework/Resources/include/R_ext/Lapack.h:2404:1: note: 'dgesdd_' declared here F77_NAME(dgesdd)(const char* jobz, ^ /Library/Frameworks/R.framework/Resources/include/R_ext/RS.h:81:24: note: expanded from macro 'F77_NAME' #define F77_NAME(x) F77_CALL(x) ^ /Library/Frameworks/R.framework/Resources/include/R_ext/RS.h:77:22: note: expanded from macro 'F77_CALL' # define F77_CALL(x) x ## _ ^ <scratch space>:76:1: note: expanded from here dgesdd_ ^ masvd.c:81:31: error: too few arguments to function call, expected 15, have 14 work, &lwork, iwork, &info); ^ /Library/Frameworks/R.framework/Resources/include/R_ext/Lapack.h:2404:1: note: 'dgesdd_' declared here F77_NAME(dgesdd)(const char* jobz, ^ /Library/Frameworks/R.framework/Resources/include/R_ext/RS.h:81:24: note: expanded from macro 'F77_NAME' #define F77_NAME(x) F77_CALL(x) ^ /Library/Frameworks/R.framework/Resources/include/R_ext/RS.h:77:22: note: expanded from macro 'F77_CALL' # define F77_CALL(x) x ## _ ^ <scratch space>:76:1: note: expanded from here dgesdd_ ^ masvd.c:114:2: warning: '/*' within block comment [-Wcomment] /* work on a copy of x */ ^ masvd.c:154:1: warning: '/*' within block comment [-Wcomment] /*#ifndef IEEE_754 ^ masvd.c:161:5: warning: '/*' within block comment [-Wcomment] /* work on a copy of x */ ^ masvd.c:165:2: warning: '/*' within block comment [-Wcomment] /* ask for optimal size of work array */ ^ masvd.c:189:2: warning: '/*' within block comment [-Wcomment] /* ask for optimal size of work array */ ^ 5 warnings and 5 errors generated. make: *** [masvd.o] Error 1 ERROR: compilation failed for package ‘maanova’ * removing ‘/private/tmp/RtmpLOHy1u/Rinst432f3201fc3e/maanova’ ----------------------------------- ERROR: package installation failed