Aaron Lun
| Snapshot Date: 2023-10-15 14:00:07 -0400 (Sun, 15 Oct 2023) |
| git_url: https://git.bioconductor.org/packages/alabaster.base |
| git_branch: RELEASE_3_17 |
| git_last_commit: 97c0956 |
| git_last_commit_date: 2023-04-25 11:42:44 -0400 (Tue, 25 Apr 2023) |
| Back to Mac ARM64 build report for BioC 3.17 |
|
This page was generated on 2023-10-20 09:37:57 -0400 (Fri, 20 Oct 2023).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| kjohnson2 | macOS 12.6.1 Monterey | arm64 | 4.3.1 (2023-06-16) -- "Beagle Scouts" | 4347 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
| Package 39/2230 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| alabaster.base 1.0.0 (landing page) Aaron Lun
| kjohnson2 | macOS 12.6.1 Monterey / arm64 | OK | OK | WARNINGS | OK | | |||||||
|
To the developers/maintainers of the alabaster.base package: - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information. |
| Package: alabaster.base |
| Version: 1.0.0 |
| Command: /Library/Frameworks/R.framework/Resources/bin/R CMD INSTALL alabaster.base |
| StartedAt: 2023-10-15 15:39:49 -0400 (Sun, 15 Oct 2023) |
| EndedAt: 2023-10-15 15:41:01 -0400 (Sun, 15 Oct 2023) |
| EllapsedTime: 71.6 seconds |
| RetCode: 0 |
| Status: OK |
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### Running command:
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### /Library/Frameworks/R.framework/Resources/bin/R CMD INSTALL alabaster.base
###
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* installing to library ‘/Library/Frameworks/R.framework/Versions/4.3-arm64/Resources/library’
* installing *source* package ‘alabaster.base’ ...
** using staged installation
** libs
using C++ compiler: ‘Apple clang version 14.0.0 (clang-1400.0.29.202)’
using C++17
using SDK: ‘MacOSX11.3.sdk’
clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I../inst/include -I'/Library/Frameworks/R.framework/Versions/4.3-arm64/Resources/library/Rcpp/include' -I'/Library/Frameworks/R.framework/Versions/4.3-arm64/Resources/library/Rhdf5lib/include' -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c RcppExports.cpp -o RcppExports.o
clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I../inst/include -I'/Library/Frameworks/R.framework/Versions/4.3-arm64/Resources/library/Rcpp/include' -I'/Library/Frameworks/R.framework/Versions/4.3-arm64/Resources/library/Rhdf5lib/include' -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c check_csv.cpp -o check_csv.o
clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I../inst/include -I'/Library/Frameworks/R.framework/Versions/4.3-arm64/Resources/library/Rcpp/include' -I'/Library/Frameworks/R.framework/Versions/4.3-arm64/Resources/library/Rhdf5lib/include' -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c check_list.cpp -o check_list.o
In file included from check_list.cpp:3:
In file included from ../inst/include/uzuki2/uzuki2.hpp:15:
In file included from ../inst/include/uzuki2/parse_json.hpp:15:
In file included from ../inst/include/byteme/SomeBufferReader.hpp:6:
../inst/include/byteme/ZlibBufferReader.hpp:47:24: warning: variable 'ret' is used uninitialized whenever 'if' condition is false [-Wsometimes-uninitialized]
} else if (mode == 3) { // Gzip/Zlib auto-detected
^~~~~~~~~
../inst/include/byteme/ZlibBufferReader.hpp:51:17: note: uninitialized use occurs here
if (ret != Z_OK) {
^~~
../inst/include/byteme/ZlibBufferReader.hpp:47:20: note: remove the 'if' if its condition is always true
} else if (mode == 3) { // Gzip/Zlib auto-detected
^~~~~~~~~~~~~~~
../inst/include/byteme/ZlibBufferReader.hpp:40:20: note: initialize the variable 'ret' to silence this warning
int ret;
^
= 0
1 warning generated.
clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I../inst/include -I'/Library/Frameworks/R.framework/Versions/4.3-arm64/Resources/library/Rcpp/include' -I'/Library/Frameworks/R.framework/Versions/4.3-arm64/Resources/library/Rhdf5lib/include' -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c load_csv.cpp -o load_csv.o
clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I../inst/include -I'/Library/Frameworks/R.framework/Versions/4.3-arm64/Resources/library/Rcpp/include' -I'/Library/Frameworks/R.framework/Versions/4.3-arm64/Resources/library/Rhdf5lib/include' -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c load_list.cpp -o load_list.o
In file included from load_list.cpp:3:
In file included from ../inst/include/uzuki2/uzuki2.hpp:15:
In file included from ../inst/include/uzuki2/parse_json.hpp:15:
In file included from ../inst/include/byteme/SomeBufferReader.hpp:6:
../inst/include/byteme/ZlibBufferReader.hpp:47:24: warning: variable 'ret' is used uninitialized whenever 'if' condition is false [-Wsometimes-uninitialized]
} else if (mode == 3) { // Gzip/Zlib auto-detected
^~~~~~~~~
../inst/include/byteme/ZlibBufferReader.hpp:51:17: note: uninitialized use occurs here
if (ret != Z_OK) {
^~~
../inst/include/byteme/ZlibBufferReader.hpp:47:20: note: remove the 'if' if its condition is always true
} else if (mode == 3) { // Gzip/Zlib auto-detected
^~~~~~~~~~~~~~~
../inst/include/byteme/ZlibBufferReader.hpp:40:20: note: initialize the variable 'ret' to silence this warning
int ret;
^
= 0
1 warning generated.
clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I../inst/include -I'/Library/Frameworks/R.framework/Versions/4.3-arm64/Resources/library/Rcpp/include' -I'/Library/Frameworks/R.framework/Versions/4.3-arm64/Resources/library/Rhdf5lib/include' -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c write_scalar.cpp -o write_scalar.o
clang++ -arch arm64 -std=gnu++17 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/Library/Frameworks/R.framework/Resources/lib -L/opt/R/arm64/lib -o alabaster.base.so RcppExports.o check_csv.o check_list.o load_csv.o load_list.o write_scalar.o /Library/Frameworks/R.framework/Versions/4.3-arm64/Resources/library/Rhdf5lib/lib/libhdf5_cpp.a /Library/Frameworks/R.framework/Versions/4.3-arm64/Resources/library/Rhdf5lib/lib/libhdf5.a -L/Library/Frameworks/R.framework/Versions/4.3-arm64/Resources/library/Rhdf5lib/lib -lcrypto -lcurl -lsz -laec -lz -ldl -lm -lz -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation
installing to /Library/Frameworks/R.framework/Versions/4.3-arm64/Resources/library/00LOCK-alabaster.base/00new/alabaster.base/libs
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (alabaster.base)