Back to Mac ARM64 build report for BioC 3.17 |
|
This page was generated on 2023-10-20 09:38:09 -0400 (Fri, 20 Oct 2023).
Hostname | OS | Arch (*) | R version | Installed pkgs |
---|---|---|---|---|
kjohnson2 | macOS 12.6.1 Monterey | arm64 | 4.3.1 (2023-06-16) -- "Beagle Scouts" | 4347 |
Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X |
Package 1620/2230 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
RadioGx 2.4.0 (landing page) Benjamin Haibe-Kains
| kjohnson2 | macOS 12.6.1 Monterey / arm64 | OK | OK | OK | OK | ||||||||
To the developers/maintainers of the RadioGx package: - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information. |
Package: RadioGx |
Version: 2.4.0 |
Command: /Library/Frameworks/R.framework/Resources/bin/R CMD check --install=check:RadioGx.install-out.txt --library=/Library/Frameworks/R.framework/Resources/library --no-vignettes --timings RadioGx_2.4.0.tar.gz |
StartedAt: 2023-10-18 17:11:11 -0400 (Wed, 18 Oct 2023) |
EndedAt: 2023-10-18 17:18:14 -0400 (Wed, 18 Oct 2023) |
EllapsedTime: 423.2 seconds |
RetCode: 0 |
Status: OK |
CheckDir: RadioGx.Rcheck |
Warnings: 0 |
############################################################################## ############################################################################## ### ### Running command: ### ### /Library/Frameworks/R.framework/Resources/bin/R CMD check --install=check:RadioGx.install-out.txt --library=/Library/Frameworks/R.framework/Resources/library --no-vignettes --timings RadioGx_2.4.0.tar.gz ### ############################################################################## ############################################################################## * using log directory ‘/Users/biocbuild/bbs-3.17-bioc-mac-arm64/meat/RadioGx.Rcheck’ * using R version 4.3.1 (2023-06-16) * using platform: aarch64-apple-darwin20 (64-bit) * R was compiled by Apple clang version 14.0.0 (clang-1400.0.29.202) GNU Fortran (GCC) 12.2.0 * running under: macOS Monterey 12.6.7 * using session charset: UTF-8 * using option ‘--no-vignettes’ * checking for file ‘RadioGx/DESCRIPTION’ ... OK * checking extension type ... Package * this is package ‘RadioGx’ version ‘2.4.0’ * package encoding: UTF-8 * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking for sufficient/correct file permissions ... OK * checking whether package ‘RadioGx’ can be installed ... OK * checking installed package size ... OK * checking package directory ... OK * checking ‘build’ directory ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking R files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... OK * checking whether the package can be loaded with stated dependencies ... OK * checking whether the package can be unloaded cleanly ... OK * checking whether the namespace can be loaded with stated dependencies ... OK * checking whether the namespace can be unloaded cleanly ... OK * checking startup messages can be suppressed ... OK * checking dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... OK * checking Rd files ... OK * checking Rd metadata ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking contents of ‘data’ directory ... OK * checking data for non-ASCII characters ... NOTE Note: found 52 marked UTF-8 strings * checking LazyData ... OK * checking data for ASCII and uncompressed saves ... OK * checking files in ‘vignettes’ ... OK * checking examples ... OK * checking for unstated dependencies in vignettes ... OK * checking package vignettes in ‘inst/doc’ ... OK * checking running R code from vignettes ... SKIPPED * checking re-building of vignette outputs ... SKIPPED * checking PDF version of manual ... OK * DONE Status: 1 NOTE See ‘/Users/biocbuild/bbs-3.17-bioc-mac-arm64/meat/RadioGx.Rcheck/00check.log’ for details.
RadioGx.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### /Library/Frameworks/R.framework/Resources/bin/R CMD INSTALL RadioGx ### ############################################################################## ############################################################################## * installing to library ‘/Library/Frameworks/R.framework/Versions/4.3-arm64/Resources/library’ * installing *source* package ‘RadioGx’ ... ** using staged installation ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (RadioGx)
RadioGx.Rcheck/RadioGx-Ex.timings
name | user | system | elapsed | |
RadioSet-accessors | 1.718 | 0.165 | 3.349 | |
availableRSets | 0 | 0 | 0 | |
checkRSetStructure | 0.520 | 0.011 | 0.954 | |
computeAUC | 0.003 | 0.000 | 0.004 | |
computeD10 | 0 | 0 | 0 | |
computeSF2 | 0 | 0 | 0 | |
dim-RadioSet-method | 1.012 | 0.025 | 1.927 | |
doseResponseCurve | 0.065 | 0.006 | 0.114 | |
downloadRSet | 0.000 | 0.000 | 0.001 | |
linearQuadraticModel | 0.002 | 0.000 | 0.002 | |
plotCurve | 0.018 | 0.002 | 0.035 | |
radSensitivitySig | 0.829 | 0.064 | 1.673 | |
show-RadioSet-method | 0.458 | 0.012 | 0.858 | |
show-RadioSig-method | 1.358 | 0.056 | 2.508 | |
showSigAnnot-RadioSig-method | 0.605 | 0.030 | 1.098 | |
sub-RadioSet-ANY-ANY-ANY-method | 0.567 | 0.015 | 0.954 | |
subsetTo-RadioSet-method | 0.114 | 0.003 | 0.179 | |
summarizeMolecularProfiles-RadioSet-method | 0.572 | 0.012 | 0.896 | |
summarizeSensitivityProfiles-RadioSet-method | 1.012 | 0.016 | 1.579 | |