Denes Turei
| Snapshot Date: 2023-10-15 14:00:07 -0400 (Sun, 15 Oct 2023) |
| git_url: https://git.bioconductor.org/packages/OmnipathR |
| git_branch: RELEASE_3_17 |
| git_last_commit: b12b9bf |
| git_last_commit_date: 2023-09-15 08:58:47 -0400 (Fri, 15 Sep 2023) |
| Back to Mac ARM64 build report for BioC 3.17 |
|
This page was generated on 2023-10-20 09:38:08 -0400 (Fri, 20 Oct 2023).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| kjohnson2 | macOS 12.6.1 Monterey | arm64 | 4.3.1 (2023-06-16) -- "Beagle Scouts" | 4347 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
| Package 1425/2230 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| OmnipathR 3.8.2 (landing page) Denes Turei
| kjohnson2 | macOS 12.6.1 Monterey / arm64 | OK | OK | OK | OK | | |||||||
|
To the developers/maintainers of the OmnipathR package: - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information. |
| Package: OmnipathR |
| Version: 3.8.2 |
| Command: rm -rf OmnipathR.buildbin-libdir && mkdir OmnipathR.buildbin-libdir && /Users/biocbuild/BBS/utils/build-universal.sh OmnipathR_3.8.2.tar.gz /Library/Frameworks/R.framework/Resources/bin/R OmnipathR.buildbin-libdir |
| StartedAt: 2023-10-19 15:36:59 -0400 (Thu, 19 Oct 2023) |
| EndedAt: 2023-10-19 15:37:36 -0400 (Thu, 19 Oct 2023) |
| EllapsedTime: 36.7 seconds |
| RetCode: 0 |
| Status: OK |
| PackageFile: OmnipathR_3.8.2.tgz |
| PackageFileSize: 3.124 MiB |
############################################################################## ############################################################################## ### ### Running command: ### ### rm -rf OmnipathR.buildbin-libdir && mkdir OmnipathR.buildbin-libdir && /Users/biocbuild/BBS/utils/build-universal.sh OmnipathR_3.8.2.tar.gz /Library/Frameworks/R.framework/Resources/bin/R OmnipathR.buildbin-libdir ### ############################################################################## ############################################################################## >>>>>>> >>>>>>> INSTALLATION WITH 'R CMD INSTALL --preclean --no-multiarch --library=OmnipathR.buildbin-libdir OmnipathR_3.8.2.tar.gz' >>>>>>> * installing *source* package ‘OmnipathR’ ... ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location [2023-10-19 15:37:29] [TRACE] [OmnipathR] Reading JSON from `/Users/biocbuild/Library/Caches/OmnipathR/cache.json` (encoding: UTF-8). [2023-10-19 15:37:29] [TRACE] [OmnipathR] JSON validation successful: TRUE [2023-10-19 15:37:29] [INFO] [OmnipathR] Initialized cache: `/Users/biocbuild/Library/Caches/OmnipathR`. [2023-10-19 15:37:29] [TRACE] [OmnipathR] Running on a build server, wiping cache. [2023-10-19 15:37:29] [TRACE] [OmnipathR] Cache is at `/Users/biocbuild/Library/Caches/OmnipathR`. [2023-10-19 15:37:29] [TRACE] [OmnipathR] Contains 4 files. [2023-10-19 15:37:29] [TRACE] [OmnipathR] Cache is locked: FALSE. [2023-10-19 15:37:29] [TRACE] [OmnipathR] Reading JSON from `/Users/biocbuild/Library/Caches/OmnipathR/cache.json` (encoding: UTF-8). [2023-10-19 15:37:29] [TRACE] [OmnipathR] JSON validation successful: TRUE [2023-10-19 15:37:29] [SUCCESS] [OmnipathR] Removing all cache contents from `/Users/biocbuild/Library/Caches/OmnipathR`. [2023-10-19 15:37:29] [TRACE] [OmnipathR] Pandoc version: `3.1.2`. [2023-10-19 15:37:29] [TRACE] [OmnipathR] Reading JSON from `/Users/biocbuild/bbs-3.17-bioc-mac-arm64/meat/OmnipathR.buildbin-libdir/00LOCK-OmnipathR/00new/OmnipathR/db/db_def.json` (encoding: UTF-8). [2023-10-19 15:37:29] [TRACE] [OmnipathR] JSON validation successful: TRUE [2023-10-19 15:37:29] [TRACE] [OmnipathR] Reading JSON from `/Users/biocbuild/bbs-3.17-bioc-mac-arm64/meat/OmnipathR.buildbin-libdir/00LOCK-OmnipathR/00new/OmnipathR/internal/magic_bytes.json` (encoding: UTF-8). [2023-10-19 15:37:29] [TRACE] [OmnipathR] JSON validation successful: TRUE [2023-10-19 15:37:30] [TRACE] [OmnipathR] Reading JSON from `/Users/biocbuild/bbs-3.17-bioc-mac-arm64/meat/OmnipathR.buildbin-libdir/00LOCK-OmnipathR/00new/OmnipathR/internal/urls.json` (encoding: UTF-8). [2023-10-19 15:37:30] [TRACE] [OmnipathR] JSON validation successful: TRUE [2023-10-19 15:37:30] [TRACE] [OmnipathR] Reading JSON from `/Users/biocbuild/bbs-3.17-bioc-mac-arm64/meat/OmnipathR.buildbin-libdir/00LOCK-OmnipathR/00new/OmnipathR/internal/id_types.json` (encoding: UTF-8). [2023-10-19 15:37:30] [TRACE] [OmnipathR] JSON validation successful: TRUE [2023-10-19 15:37:30] [TRACE] [OmnipathR] Cache locked: FALSE ** testing if installed package can be loaded from final location [2023-10-19 15:37:33] [TRACE] [OmnipathR] Reading JSON from `/Users/biocbuild/Library/Caches/OmnipathR/cache.json` (encoding: UTF-8). [2023-10-19 15:37:33] [TRACE] [OmnipathR] JSON validation successful: TRUE [2023-10-19 15:37:33] [INFO] [OmnipathR] Initialized cache: `/Users/biocbuild/Library/Caches/OmnipathR`. [2023-10-19 15:37:33] [TRACE] [OmnipathR] Running on a build server, wiping cache. [2023-10-19 15:37:33] [TRACE] [OmnipathR] Cache is at `/Users/biocbuild/Library/Caches/OmnipathR`. [2023-10-19 15:37:33] [TRACE] [OmnipathR] Contains 1 files. [2023-10-19 15:37:33] [TRACE] [OmnipathR] Cache is locked: FALSE. [2023-10-19 15:37:33] [TRACE] [OmnipathR] Reading JSON from `/Users/biocbuild/Library/Caches/OmnipathR/cache.json` (encoding: UTF-8). [2023-10-19 15:37:33] [TRACE] [OmnipathR] JSON validation successful: TRUE [2023-10-19 15:37:33] [SUCCESS] [OmnipathR] Removing all cache contents from `/Users/biocbuild/Library/Caches/OmnipathR`. [2023-10-19 15:37:34] [TRACE] [OmnipathR] Pandoc version: `3.1.2`. [2023-10-19 15:37:34] [TRACE] [OmnipathR] Reading JSON from `/Users/biocbuild/bbs-3.17-bioc-mac-arm64/meat/OmnipathR.buildbin-libdir/OmnipathR/db/db_def.json` (encoding: UTF-8). [2023-10-19 15:37:34] [TRACE] [OmnipathR] JSON validation successful: TRUE [2023-10-19 15:37:34] [TRACE] [OmnipathR] Reading JSON from `/Users/biocbuild/bbs-3.17-bioc-mac-arm64/meat/OmnipathR.buildbin-libdir/OmnipathR/internal/magic_bytes.json` (encoding: UTF-8). [2023-10-19 15:37:34] [TRACE] [OmnipathR] JSON validation successful: TRUE [2023-10-19 15:37:34] [TRACE] [OmnipathR] Reading JSON from `/Users/biocbuild/bbs-3.17-bioc-mac-arm64/meat/OmnipathR.buildbin-libdir/OmnipathR/internal/urls.json` (encoding: UTF-8). [2023-10-19 15:37:34] [TRACE] [OmnipathR] JSON validation successful: TRUE [2023-10-19 15:37:34] [TRACE] [OmnipathR] Reading JSON from `/Users/biocbuild/bbs-3.17-bioc-mac-arm64/meat/OmnipathR.buildbin-libdir/OmnipathR/internal/id_types.json` (encoding: UTF-8). [2023-10-19 15:37:34] [TRACE] [OmnipathR] JSON validation successful: TRUE [2023-10-19 15:37:34] [TRACE] [OmnipathR] Cache locked: FALSE ** testing if installed package keeps a record of temporary installation path * DONE (OmnipathR)