Back to Mac ARM64 build report for BioC 3.17
AB[C]DEFGHIJKLMNOPQRSTUVWXYZ

This page was generated on 2023-10-20 09:38:00 -0400 (Fri, 20 Oct 2023).

HostnameOSArch (*)R versionInstalled pkgs
kjohnson2macOS 12.6.1 Montereyarm644.3.1 (2023-06-16) -- "Beagle Scouts" 4347
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

Package 429/2230HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
CopywriteR 2.32.0  (landing page)
Oscar Krijgsman
Snapshot Date: 2023-10-15 14:00:07 -0400 (Sun, 15 Oct 2023)
git_url: https://git.bioconductor.org/packages/CopywriteR
git_branch: RELEASE_3_17
git_last_commit: b14b332
git_last_commit_date: 2023-04-25 10:39:03 -0400 (Tue, 25 Apr 2023)
kjohnson2macOS 12.6.1 Monterey / arm64  OK    ERROR  skippedskipped

BUILD results for CopywriteR on kjohnson2


To the developers/maintainers of the CopywriteR package:
- Use the following Renviron settings to reproduce errors and warnings.
- If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information.

raw results

Summary

Package: CopywriteR
Version: 2.32.0
Command: /Library/Frameworks/R.framework/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data CopywriteR
StartedAt: 2023-10-16 00:08:38 -0400 (Mon, 16 Oct 2023)
EndedAt: 2023-10-16 00:10:23 -0400 (Mon, 16 Oct 2023)
EllapsedTime: 104.6 seconds
RetCode: 1
Status:   ERROR  
PackageFile: None
PackageFileSize: NA

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   /Library/Frameworks/R.framework/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data CopywriteR
###
##############################################################################
##############################################################################


* checking for file ‘CopywriteR/DESCRIPTION’ ... OK
* preparing ‘CopywriteR’:
* checking DESCRIPTION meta-information ... OK
* installing the package to build vignettes
* creating vignettes ... ERROR
--- re-building ‘CopywriteR.Rnw’ using Sweave
Loading required package: BiocParallel
Warning: Package 'CopywriteR' is deprecated and will be removed from
  Bioconductor version 3.18
Warning in simpleLoess(y, x, w, span, degree = degree, parametric = parametric,  :
  pseudoinverse used at 0.979
Warning in simpleLoess(y, x, w, span, degree = degree, parametric = parametric,  :
  neighborhood radius 0.001
Warning in simpleLoess(y, x, w, span, degree = degree, parametric = parametric,  :
  reciprocal condition number  0
Warning in simpleLoess(y, x, w, span, degree = degree, parametric = parametric,  :
  There are other near singularities as well. 1e-06

Error: processing vignette 'CopywriteR.Rnw' failed with diagnostics:
 chunk 10 (label = CopywriteR) 
Error in value[[3L]](cond) : 
  The GC-content and mappability normalization did not work due to a
  failure to calculate loesses. This can generally be solved by using
  larger bin sizes. Stopping execution of the remaining part of the
  script...

--- failed re-building ‘CopywriteR.Rnw’

SUMMARY: processing the following file failed:
  ‘CopywriteR.Rnw’

Error: Vignette re-building failed.
Execution halted