Back to Multiple platform build/check report for BioC 3.17: simplified long |
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This page was generated on 2023-10-16 11:35:32 -0400 (Mon, 16 Oct 2023).
Hostname | OS | Arch (*) | R version | Installed pkgs |
---|---|---|---|---|
nebbiolo1 | Linux (Ubuntu 22.04.2 LTS) | x86_64 | 4.3.1 (2023-06-16) -- "Beagle Scouts" | 4626 |
palomino3 | Windows Server 2022 Datacenter | x64 | 4.3.1 (2023-06-16 ucrt) -- "Beagle Scouts" | 4379 |
merida1 | macOS 12.6.4 Monterey | x86_64 | 4.3.1 (2023-06-16) -- "Beagle Scouts" | 4395 |
Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X |
Package 1251/2230 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
mirTarRnaSeq 1.8.0 (landing page) Mercedeh Movassagh
| nebbiolo1 | Linux (Ubuntu 22.04.2 LTS) / x86_64 | OK | OK | OK | |||||||||
palomino3 | Windows Server 2022 Datacenter / x64 | OK | OK | OK | OK | |||||||||
merida1 | macOS 12.6.4 Monterey / x86_64 | OK | OK | OK | OK | |||||||||
kjohnson2 | macOS 12.6.1 Monterey / arm64 | see weekly results here | ||||||||||||
To the developers/maintainers of the mirTarRnaSeq package: - Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/mirTarRnaSeq.git to reflect on this report. See Troubleshooting Build Report for more information. - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information. |
Package: mirTarRnaSeq |
Version: 1.8.0 |
Command: /home/biocbuild/bbs-3.17-bioc/R/bin/R CMD check --install=check:mirTarRnaSeq.install-out.txt --library=/home/biocbuild/bbs-3.17-bioc/R/site-library --timings mirTarRnaSeq_1.8.0.tar.gz |
StartedAt: 2023-10-15 22:54:36 -0400 (Sun, 15 Oct 2023) |
EndedAt: 2023-10-15 22:58:11 -0400 (Sun, 15 Oct 2023) |
EllapsedTime: 214.3 seconds |
RetCode: 0 |
Status: OK |
CheckDir: mirTarRnaSeq.Rcheck |
Warnings: 0 |
############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/bbs-3.17-bioc/R/bin/R CMD check --install=check:mirTarRnaSeq.install-out.txt --library=/home/biocbuild/bbs-3.17-bioc/R/site-library --timings mirTarRnaSeq_1.8.0.tar.gz ### ############################################################################## ############################################################################## * using log directory ‘/home/biocbuild/bbs-3.17-bioc/meat/mirTarRnaSeq.Rcheck’ * using R version 4.3.1 (2023-06-16) * using platform: x86_64-pc-linux-gnu (64-bit) * R was compiled by gcc (Ubuntu 11.3.0-1ubuntu1~22.04.1) 11.3.0 GNU Fortran (Ubuntu 11.3.0-1ubuntu1~22.04.1) 11.3.0 * running under: Ubuntu 22.04.3 LTS * using session charset: UTF-8 * checking for file ‘mirTarRnaSeq/DESCRIPTION’ ... OK * checking extension type ... Package * this is package ‘mirTarRnaSeq’ version ‘1.8.0’ * package encoding: UTF-8 * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking for sufficient/correct file permissions ... OK * checking whether package ‘mirTarRnaSeq’ can be installed ... OK * checking installed package size ... OK * checking package directory ... OK * checking ‘build’ directory ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking R files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... OK * checking whether the package can be loaded with stated dependencies ... OK * checking whether the package can be unloaded cleanly ... OK * checking whether the namespace can be loaded with stated dependencies ... OK * checking whether the namespace can be unloaded cleanly ... OK * checking loading without being on the library search path ... OK * checking startup messages can be suppressed ... OK * checking dependencies in R code ... NOTE Package in Depends field not imported from: ‘ggplot2’ These packages need to be imported from (in the NAMESPACE file) for when this namespace is loaded but not attached. * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... OK * checking Rd files ... OK * checking Rd metadata ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking contents of ‘data’ directory ... OK * checking data for non-ASCII characters ... OK * checking LazyData ... OK * checking data for ASCII and uncompressed saves ... OK * checking files in ‘vignettes’ ... OK * checking examples ... OK * checking for unstated dependencies in vignettes ... OK * checking package vignettes in ‘inst/doc’ ... OK * checking running R code from vignettes ... ‘mirTarRnaSeq.Rmd’ using ‘UTF-8’... OK NONE * checking re-building of vignette outputs ... OK * checking PDF version of manual ... OK * DONE Status: 1 NOTE See ‘/home/biocbuild/bbs-3.17-bioc/meat/mirTarRnaSeq.Rcheck/00check.log’ for details.
mirTarRnaSeq.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/bbs-3.17-bioc/R/bin/R CMD INSTALL mirTarRnaSeq ### ############################################################################## ############################################################################## * installing to library ‘/home/biocbuild/bbs-3.17-bioc/R/site-library’ * installing *source* package ‘mirTarRnaSeq’ ... ** using staged installation ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (mirTarRnaSeq)
mirTarRnaSeq.Rcheck/mirTarRnaSeq-Ex.timings
name | user | system | elapsed | |
combiner | 0.003 | 0.004 | 0.008 | |
corMirnaRna | 0.064 | 0.000 | 0.064 | |
corMirnaRnaMiranda | 0.096 | 0.024 | 0.120 | |
downloadMirandaFile | 0 | 0 | 0 | |
drawCorPlot | 0 | 0 | 0 | |
drawInterPlots | 0.028 | 0.000 | 0.028 | |
fdrSig | 0.48 | 0.00 | 0.48 | |
finInterResult | 0.001 | 0.000 | 0.001 | |
geneVari | 0.000 | 0.001 | 0.000 | |
getInputSpecies | 0.222 | 0.015 | 0.239 | |
glm_gaussian | 0.001 | 0.000 | 0.000 | |
glm_multi | 0.001 | 0.000 | 0.000 | |
glm_nb | 0.001 | 0.000 | 0.000 | |
glm_poisson | 0.001 | 0.000 | 0.000 | |
glm_zeroinfl | 0.001 | 0.000 | 0.001 | |
glm_zeroinfl_negbin | 0.000 | 0.000 | 0.001 | |
glm_zeroinfl_poisson | 0 | 0 | 0 | |
importMirandaFile | 0 | 0 | 0 | |
makeFormulaRightSide | 0.000 | 0.000 | 0.001 | |
miRanComp | 0.06 | 0.02 | 0.08 | |
miRandaIntersect | 0.014 | 0.000 | 0.015 | |
mirRnaDensityCor | 0.025 | 0.000 | 0.026 | |
mirRnaDensityInter | 0.000 | 0.000 | 0.001 | |
mirRnaHeatmap | 0.646 | 0.008 | 0.654 | |
mirRnaHeatmapDiff | 0.082 | 0.000 | 0.082 | |
mirandaIntersectInter | 0.009 | 0.004 | 0.012 | |
modelAIC | 0.057 | 0.000 | 0.057 | |
modelCoefficients | 0.000 | 0.001 | 0.001 | |
modelData | 0.000 | 0.001 | 0.001 | |
modelModelName | 0.000 | 0.001 | 0.001 | |
modelModelPvalue | 0.000 | 0.000 | 0.001 | |
modelTermPvalues | 0.001 | 0.000 | 0.001 | |
modelsFilter | 0.001 | 0.000 | 0.000 | |
one2OneRnaMiRNA | 0 | 0 | 0 | |
plotFit | 0.006 | 0.000 | 0.006 | |
plotResiduals | 0.007 | 0.000 | 0.007 | |
plotTerms | 0.003 | 0.000 | 0.002 | |
runAllMirnaModels | 0.499 | 0.008 | 0.507 | |
runModels | 0.454 | 0.000 | 0.454 | |
sampCorRnaMirna | 0.423 | 0.024 | 0.447 | |
threshSig | 0 | 0 | 0 | |
threshSigInter | 0.002 | 0.000 | 0.001 | |
twoTimePoint | 0 | 0 | 0 | |
twoTimePointSamp | 0 | 0 | 0 | |
tzTrans | 0.005 | 0.000 | 0.005 | |