##############################################################################
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###
### Running command:
###
###   /home/biocbuild/bbs-3.17-bioc/R/bin/R CMD check --install=check:fcScan.install-out.txt --library=/home/biocbuild/bbs-3.17-bioc/R/site-library --timings fcScan_1.14.0.tar.gz
###
##############################################################################
##############################################################################


* using log directory ‘/home/biocbuild/bbs-3.17-bioc/meat/fcScan.Rcheck’
* using R version 4.3.1 (2023-06-16)
* using platform: x86_64-pc-linux-gnu (64-bit)
* R was compiled by
    gcc (Ubuntu 11.3.0-1ubuntu1~22.04.1) 11.3.0
    GNU Fortran (Ubuntu 11.3.0-1ubuntu1~22.04.1) 11.3.0
* running under: Ubuntu 22.04.3 LTS
* using session charset: UTF-8
* checking for file ‘fcScan/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘fcScan’ version ‘1.14.0’
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘fcScan’ can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking loading without being on the library search path ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... OK
* checking for unstated dependencies in ‘tests’ ... OK
* checking tests ...
  Running ‘runTests.R’
 OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in ‘inst/doc’ ... OK
* checking running R code from vignettes ...
  ‘fcScan_vignette.Rmd’ using ‘UTF8’... OK
 NONE
* checking re-building of vignette outputs ... OK
* checking PDF version of manual ... OK
* DONE

Status: OK

##############################################################################
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###
### Running command:
###
###   /home/biocbuild/bbs-3.17-bioc/R/bin/R CMD INSTALL fcScan
###
##############################################################################
##############################################################################


* installing to library ‘/home/biocbuild/bbs-3.17-bioc/R/site-library’
* installing *source* package ‘fcScan’ ...
** using staged installation
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (fcScan)

R version 4.3.1 (2023-06-16) -- "Beagle Scouts"
Copyright (C) 2023 The R Foundation for Statistical Computing
Platform: x86_64-pc-linux-gnu (64-bit)

R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under certain conditions.
Type 'license()' or 'licence()' for distribution details.

R is a collaborative project with many contributors.
Type 'contributors()' for more information and
'citation()' on how to cite R or R packages in publications.

Type 'demo()' for some demos, 'help()' for on-line help, or
'help.start()' for an HTML browser interface to help.
Type 'q()' to quit R.

> BiocGenerics:::testPackage("fcScan")
Loading required package: GenomicRanges
Loading required package: stats4
Loading required package: BiocGenerics

Attaching package: 'BiocGenerics'

The following objects are masked from 'package:stats':

    IQR, mad, sd, var, xtabs

The following objects are masked from 'package:base':

    Filter, Find, Map, Position, Reduce, anyDuplicated, aperm, append,
    as.data.frame, basename, cbind, colnames, dirname, do.call,
    duplicated, eval, evalq, get, grep, grepl, intersect, is.unsorted,
    lapply, mapply, match, mget, order, paste, pmax, pmax.int, pmin,
    pmin.int, rank, rbind, rownames, sapply, setdiff, sort, table,
    tapply, union, unique, unsplit, which.max, which.min

Loading required package: S4Vectors

Attaching package: 'S4Vectors'

The following object is masked from 'package:utils':

    findMatches

The following objects are masked from 'package:base':

    I, expand.grid, unname

Loading required package: IRanges
Loading required package: GenomeInfoDb
17  entries loaded 
Running getCluster using 1 threads
Time difference of 0.2396672 secs
Sites in condition do not match sites in data
3  entries loaded 
Running getCluster using 1 threads
Time difference of 0.1030502 secs
17  entries loaded 
Running getCluster using 1 threads
Time difference of 0.0955615 secs
17  entries loaded 
Running getCluster using 1 threads
Time difference of 0.09683514 secs
17  entries loaded 
Running getCluster using 1 threads
No cluster found
17  entries loaded 
Running getCluster using 1 threads
Time difference of 0.08625293 secs
17  entries loaded 
Running getCluster using 1 threads
Time difference of 0.07930684 secs
17  entries loaded 
Running getCluster using 1 threads
Time difference of 0.1159885 secs
17  entries loaded 
Running getCluster using 1 threads
Time difference of 0.06304669 secs
17  entries loaded 
Running getCluster using 1 threads
Time difference of 0.08568048 secs
17  entries loaded 
Running getCluster using 1 threads
Time difference of 0.1093817 secs
6  entries loaded 
Running getCluster using 1 threads
Time difference of 0.07439733 secs
6  entries loaded 
Running getCluster using 1 threads
Time difference of 0.07409739 secs
6  entries loaded 
Running getCluster using 1 threads
Time difference of 0.08196282 secs
6  entries loaded 
Running getCluster using 1 threads
Time difference of 0.06047249 secs
10  entries loaded 
Running getCluster using 1 threads
Time difference of 0.06921458 secs
10  entries loaded 
Running getCluster using 1 threads
No cluster found
10  entries loaded 
Running getCluster using 1 threads
Time difference of 0.09480405 secs
16  entries loaded 
Running getCluster using 1 threads
Time difference of 0.05651617 secs
6  entries loaded 
Running getCluster using 1 threads
Time difference of 0.08464074 secs
6  entries loaded 
Running getCluster using 1 threads
Time difference of 0.08324099 secs
6  entries loaded 
Running getCluster using 1 threads
Time difference of 0.0648849 secs
6  entries loaded 
Running getCluster using 1 threads
Time difference of 0.08905077 secs
6  entries loaded 
Running getCluster using 1 threads
Time difference of 0.08281279 secs
17  entries loaded 
Running getCluster using 1 threads
Time difference of 0.0643189 secs
17  entries loaded 
Running getCluster using 1 threads
Time difference of 0.08448935 secs
17  entries loaded 
Running getCluster using 1 threads
Time difference of 0.09029651 secs
17  entries loaded 
Running getCluster using 1 threads
Time difference of 0.121753 secs
17  entries loaded 
Running getCluster using 1 threads
Time difference of 0.1029265 secs
17  entries loaded 
Running getCluster using 1 threads
Time difference of 0.07200646 secs
17  entries loaded 
Running getCluster using 1 threads
Time difference of 0.06679988 secs
17  entries loaded 
Running getCluster using 1 threads
Time difference of 0.09541011 secs
17  entries loaded 
Running getCluster using 1 threads
Time difference of 0.09109592 secs
17  entries loaded 
Running getCluster using 1 threads
Time difference of 0.1014345 secs
17  entries loaded 
Running getCluster using 1 threads
Time difference of 0.1218047 secs
17  entries loaded 
Running getCluster using 1 threads
Time difference of 0.1187584 secs
17  entries loaded 
Running getCluster using 1 threads
Time difference of 0.1240652 secs
17  entries loaded 
Running getCluster using 1 threads
Time difference of 0.1183605 secs
17  entries loaded 
Running getCluster using 1 threads
Time difference of 0.1200299 secs
17  entries loaded 
Running getCluster using 1 threads
Time difference of 0.09787631 secs
17  entries loaded 
Running getCluster using 1 threads
Time difference of 0.0971117 secs
17  entries loaded 
Running getCluster using 1 threads
Time difference of 0.1119802 secs
17  entries loaded 
Running getCluster using 1 threads
Time difference of 0.09931421 secs
17  entries loaded 
Running getCluster using 1 threads
Time difference of 0.1335759 secs


RUNIT TEST PROTOCOL -- Sun Oct 15 21:22:52 2023 
*********************************************** 
Number of test functions: 1 
Number of errors: 0 
Number of failures: 0 

 
1 Test Suite : 
fcScan RUnit Tests - 1 test function, 0 errors, 0 failures
Number of test functions: 1 
Number of errors: 0 
Number of failures: 0 
> 
> proc.time()
   user  system elapsed 
 16.722   1.037  18.242