Greg Finak
| Snapshot Date: 2023-01-15 14:00:11 -0500 (Sun, 15 Jan 2023) |
| git_url: https://git.bioconductor.org/packages/MIMOSA |
| git_branch: master |
| git_last_commit: 4a029fc |
| git_last_commit_date: 2022-11-01 11:09:12 -0500 (Tue, 01 Nov 2022) |
| Back to Multiple platform build/check report for BioC 3.17 |
|
This page was generated on 2023-01-16 11:09:50 -0500 (Mon, 16 Jan 2023).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| nebbiolo1 | Linux (Ubuntu 22.04.1 LTS) | x86_64 | R Under development (unstable) (2023-01-10 r83596) -- "Unsuffered Consequences" | 4435 |
| palomino3 | Windows Server 2022 Datacenter | x64 | R Under development (unstable) (2023-01-10 r83596 ucrt) -- "Unsuffered Consequences" | 4238 |
| merida1 | macOS 10.14.6 Mojave | x86_64 | R Under development (unstable) (2023-01-10 r83596) -- "Unsuffered Consequences" | 4251 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
|
To the developers/maintainers of the MIMOSA package: - Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/MIMOSA.git to reflect on this report. See How and When does the builder pull? When will my changes propagate? for more information. - Make sure to use the following settings in order to reproduce any error or warning you see on this page. |
| Package 1189/2160 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| MIMOSA 1.37.0 (landing page) Greg Finak
| nebbiolo1 | Linux (Ubuntu 22.04.1 LTS) / x86_64 | OK | OK | WARNINGS | | ||||||||
| palomino3 | Windows Server 2022 Datacenter / x64 | OK | OK | WARNINGS | OK | | ||||||||
| merida1 | macOS 10.14.6 Mojave / x86_64 | OK | OK | OK | OK | | ||||||||
| Package: MIMOSA |
| Version: 1.37.0 |
| Command: rm -rf MIMOSA.buildbin-libdir && mkdir MIMOSA.buildbin-libdir && /Users/biocbuild/BBS/utils/build-universal.sh MIMOSA_1.37.0.tar.gz /Library/Frameworks/R.framework/Resources/bin/R MIMOSA.buildbin-libdir |
| StartedAt: 2023-01-16 09:10:35 -0500 (Mon, 16 Jan 2023) |
| EndedAt: 2023-01-16 09:12:49 -0500 (Mon, 16 Jan 2023) |
| EllapsedTime: 134.4 seconds |
| RetCode: 0 |
| Status: OK |
| PackageFile: MIMOSA_1.37.0.tgz |
| PackageFileSize: 617.8 KiB |
############################################################################## ############################################################################## ### ### Running command: ### ### rm -rf MIMOSA.buildbin-libdir && mkdir MIMOSA.buildbin-libdir && /Users/biocbuild/BBS/utils/build-universal.sh MIMOSA_1.37.0.tar.gz /Library/Frameworks/R.framework/Resources/bin/R MIMOSA.buildbin-libdir ### ############################################################################## ############################################################################## >>>>>>> >>>>>>> INSTALLATION WITH 'R CMD INSTALL --preclean --no-multiarch --library=MIMOSA.buildbin-libdir MIMOSA_1.37.0.tar.gz' >>>>>>> * installing *source* package ‘MIMOSA’ ... ** using staged installation ** libs using C compiler: ‘Apple clang version 11.0.0 (clang-1100.0.33.17)’ using C++ compiler: ‘Apple clang version 11.0.0 (clang-1100.0.33.17)’ using SDK: ‘’ clang++ -mmacosx-version-min=10.13 -std=gnu++14 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Library/Frameworks/R.framework/Versions/4.3/Resources/library/Rcpp/include' -I'/Library/Frameworks/R.framework/Versions/4.3/Resources/library/RcppArmadillo/include' -I/usr/local/include `/Library/Frameworks/R.framework/Resources/bin/Rscript -e "RcppArmadillo:::CxxFlags()"` -fPIC -Wall -g -O2 -c BetaMix.cpp -o BetaMix.o clang++ -mmacosx-version-min=10.13 -std=gnu++14 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Library/Frameworks/R.framework/Versions/4.3/Resources/library/Rcpp/include' -I'/Library/Frameworks/R.framework/Versions/4.3/Resources/library/RcppArmadillo/include' -I/usr/local/include `/Library/Frameworks/R.framework/Resources/bin/Rscript -e "RcppArmadillo:::CxxFlags()"` -fPIC -Wall -g -O2 -c MCMC.cpp -o MCMC.o clang -mmacosx-version-min=10.13 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Library/Frameworks/R.framework/Versions/4.3/Resources/library/Rcpp/include' -I'/Library/Frameworks/R.framework/Versions/4.3/Resources/library/RcppArmadillo/include' -I/usr/local/include -fPIC -Wall -g -O2 -c MIMOSA_init.c -o MIMOSA_init.o clang -mmacosx-version-min=10.13 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Library/Frameworks/R.framework/Versions/4.3/Resources/library/Rcpp/include' -I'/Library/Frameworks/R.framework/Versions/4.3/Resources/library/RcppArmadillo/include' -I/usr/local/include -fPIC -Wall -g -O2 -c betaintegral.c -o betaintegral.o clang++ -mmacosx-version-min=10.13 -std=gnu++14 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Library/Frameworks/R.framework/Versions/4.3/Resources/library/Rcpp/include' -I'/Library/Frameworks/R.framework/Versions/4.3/Resources/library/RcppArmadillo/include' -I/usr/local/include `/Library/Frameworks/R.framework/Resources/bin/Rscript -e "RcppArmadillo:::CxxFlags()"` -fPIC -Wall -g -O2 -c betaintegralRcpp.cpp -o betaintegralRcpp.o clang++ -mmacosx-version-min=10.13 -std=gnu++14 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/Library/Frameworks/R.framework/Resources/lib -L/usr/local/lib -o MIMOSA.so BetaMix.o MCMC.o MIMOSA_init.o betaintegral.o betaintegralRcpp.o -O3 -lm -lstdc++ -I"/Library/Frameworks/R.framework/Versions/4.3/Resources/library/RcppArmadillo/include" -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation installing to /Users/biocbuild/bbs-3.17-bioc/meat/MIMOSA.buildbin-libdir/00LOCK-MIMOSA/00new/MIMOSA/libs ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (MIMOSA) >>>>>>> >>>>>>> FIXING LINKS FOR MIMOSA.buildbin-libdir/MIMOSA/libs/MIMOSA.so >>>>>>> install_name_tool -change "/usr/local/lib/libgcc_s.1.dylib" "/Library/Frameworks/R.framework/Versions/4.3/Resources/lib/libgcc_s.1.dylib" "MIMOSA.buildbin-libdir/MIMOSA/libs/MIMOSA.so" install_name_tool -change "/usr/local/lib/libgfortran.5.dylib" "/Library/Frameworks/R.framework/Versions/4.3/Resources/lib/libgfortran.5.dylib" "MIMOSA.buildbin-libdir/MIMOSA/libs/MIMOSA.so" install_name_tool -change "/usr/local/lib/libquadmath.0.dylib" "/Library/Frameworks/R.framework/Versions/4.3/Resources/lib/libquadmath.0.dylib" "MIMOSA.buildbin-libdir/MIMOSA/libs/MIMOSA.so"