Back to Multiple platform build/check report for BioC 3.17: simplified long |
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This page was generated on 2023-10-16 11:35:28 -0400 (Mon, 16 Oct 2023).
Hostname | OS | Arch (*) | R version | Installed pkgs |
---|---|---|---|---|
nebbiolo1 | Linux (Ubuntu 22.04.2 LTS) | x86_64 | 4.3.1 (2023-06-16) -- "Beagle Scouts" | 4626 |
palomino3 | Windows Server 2022 Datacenter | x64 | 4.3.1 (2023-06-16 ucrt) -- "Beagle Scouts" | 4379 |
merida1 | macOS 12.6.4 Monterey | x86_64 | 4.3.1 (2023-06-16) -- "Beagle Scouts" | 4395 |
Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X |
Package 1065/2230 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
LineagePulse 1.20.0 (landing page) David S Fischer
| nebbiolo1 | Linux (Ubuntu 22.04.2 LTS) / x86_64 | OK | ERROR | skipped | |||||||||
palomino3 | Windows Server 2022 Datacenter / x64 | OK | ERROR | skipped | skipped | |||||||||
merida1 | macOS 12.6.4 Monterey / x86_64 | OK | ERROR | skipped | skipped | |||||||||
kjohnson2 | macOS 12.6.1 Monterey / arm64 | see weekly results here | ||||||||||||
To the developers/maintainers of the LineagePulse package: - Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/LineagePulse.git to reflect on this report. See Troubleshooting Build Report for more information. - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information. |
Package: LineagePulse |
Version: 1.20.0 |
Command: /home/biocbuild/bbs-3.17-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data LineagePulse |
StartedAt: 2023-10-15 17:15:31 -0400 (Sun, 15 Oct 2023) |
EndedAt: 2023-10-15 17:16:24 -0400 (Sun, 15 Oct 2023) |
EllapsedTime: 52.4 seconds |
RetCode: 1 |
Status: ERROR |
PackageFile: None |
PackageFileSize: NA |
############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/bbs-3.17-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data LineagePulse ### ############################################################################## ############################################################################## * checking for file ‘LineagePulse/DESCRIPTION’ ... OK * preparing ‘LineagePulse’: * checking DESCRIPTION meta-information ... OK * installing the package to build vignettes * creating vignettes ... ERROR --- re-building ‘LineagePulse_Tutorial.Rmd’ using rmarkdown Warning: The closing backticks on line 101 ("```") in LineagePulse_Tutorial.Rmd do not match the opening backticks " ```" on line 94. You are recommended to fix either the opening or closing delimiter of the code chunk to use exactly the same numbers of backticks and same level of indentation (or blockquote). Quitting from lines 95-101 [plot-genes] (LineagePulse_Tutorial.Rmd) Error: processing vignette 'LineagePulse_Tutorial.Rmd' failed with diagnostics: incorrect number of dimensions --- failed re-building ‘LineagePulse_Tutorial.Rmd’ SUMMARY: processing the following file failed: ‘LineagePulse_Tutorial.Rmd’ Error: Vignette re-building failed. Execution halted