Back to Workflows build report for BioC 3.16

This page was generated on 2023-04-11 14:00:08 -0400 (Tue, 11 Apr 2023).

HostnameOSArch (*)R versionInstalled pkgs
nebbiolo2Linux (Ubuntu 20.04.5 LTS)x86_644.2.3 (2023-03-15) -- "Shortstop Beagle" 4502
palomino4Windows Server 2022 Datacenterx644.2.3 (2023-03-15 ucrt) -- "Shortstop Beagle" 4282
lconwaymacOS 12.5.1 Montereyx86_644.2.3 (2023-03-15) -- "Shortstop Beagle" 4310
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

BUILD results for maEndToEnd on palomino4


To the developers/maintainers of the maEndToEnd package:
Make sure to use the following settings in order to reproduce any error or warning you see on this page.

raw results

Package 17/28HostnameOS / ArchINSTALLBUILD
maEndToEnd 2.18.0  (landing page)
Stefanie Reisenauer
Snapshot Date: 2023-04-11 10:45:01 -0400 (Tue, 11 Apr 2023)
git_url: https://git.bioconductor.org/packages/maEndToEnd
git_branch: RELEASE_3_16
git_last_commit: d6abe94
git_last_commit_date: 2022-11-01 10:34:34 -0400 (Tue, 01 Nov 2022)
nebbiolo2Linux (Ubuntu 20.04.5 LTS) / x86_64  OK    ERROR  
palomino4Windows Server 2022 Datacenter / x64  OK    ERROR  
lconwaymacOS 12.5.1 Monterey / x86_64  OK    ERROR  

Summary

Package: maEndToEnd
Version: 2.18.0
Command: chmod a+r maEndToEnd -R && F:\biocbuild\bbs-3.16-bioc\R\bin\R.exe CMD build --keep-empty-dirs --no-resave-data maEndToEnd
StartedAt: 2023-04-11 11:05:24 -0400 (Tue, 11 Apr 2023)
EndedAt: 2023-04-11 11:06:17 -0400 (Tue, 11 Apr 2023)
EllapsedTime: 52.5 seconds
RetCode: 1
Status:   ERROR  
PackageFile: None
PackageFileSize: NA

Command output

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###
### Running command:
###
###   chmod a+r maEndToEnd -R && F:\biocbuild\bbs-3.16-bioc\R\bin\R.exe CMD build --keep-empty-dirs --no-resave-data maEndToEnd
###
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* checking for file 'maEndToEnd/DESCRIPTION' ... OK
* preparing 'maEndToEnd':
* checking DESCRIPTION meta-information ... OK
* installing the package to build vignettes
* creating vignettes ... ERROR
--- re-building 'MA-Workflow.Rmd' using rmarkdown
Quitting from lines 256-257 (MA-Workflow.Rmd) 
Error: processing vignette 'MA-Workflow.Rmd' failed with diagnostics:
1: StartTag: invalid element name
2: Extra content at the end of the document

--- failed re-building 'MA-Workflow.Rmd'

SUMMARY: processing the following file failed:
  'MA-Workflow.Rmd'

Error: Vignette re-building failed.
Execution halted