Kylie A. Bemis
| Snapshot Date: 2023-04-12 13:00:02 -0400 (Wed, 12 Apr 2023) |
| git_url: https://git.bioconductor.org/packages/matter |
| git_branch: RELEASE_3_16 |
| git_last_commit: 9cb1871 |
| git_last_commit_date: 2022-11-18 20:09:53 -0400 (Fri, 18 Nov 2022) |
| Back to Mac ARM64 build report for BioC 3.16 |
|
This page was generated on 2023-04-19 11:01:55 -0400 (Wed, 19 Apr 2023).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| kjohnson | macOS 13.0 Ventura | arm64 | 4.2.2 (2022-10-31) -- "Innocent and Trusting" | 4256 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
|
To the developers/maintainers of the matter package: Make sure to use the following settings in order to reproduce any error or warning you see on this page. |
| Package 1107/2183 | Hostname | OS / Arch | INSTALL | BUILD | BUILD BIN | ||||||||
| matter 2.0.1 (landing page) Kylie A. Bemis
| kjohnson | macOS 13.0 Ventura / arm64 | OK | OK | OK | | |||||||
| Package: matter |
| Version: 2.0.1 |
| Command: rm -rf matter.buildbin-libdir && mkdir matter.buildbin-libdir && /Users/biocbuild/BBS/utils/build-universal.sh matter_2.0.1.tar.gz /Library/Frameworks/R.framework/Resources/bin/R matter.buildbin-libdir |
| StartedAt: 2023-04-18 16:58:13 -0400 (Tue, 18 Apr 2023) |
| EndedAt: 2023-04-18 16:59:31 -0400 (Tue, 18 Apr 2023) |
| EllapsedTime: 78.1 seconds |
| RetCode: 0 |
| Status: OK |
| PackageFile: matter_2.0.1.tgz |
| PackageFileSize: 1.598 MiB |
############################################################################## ############################################################################## ### ### Running command: ### ### rm -rf matter.buildbin-libdir && mkdir matter.buildbin-libdir && /Users/biocbuild/BBS/utils/build-universal.sh matter_2.0.1.tar.gz /Library/Frameworks/R.framework/Resources/bin/R matter.buildbin-libdir ### ############################################################################## ############################################################################## >>>>>>> >>>>>>> INSTALLATION WITH 'R CMD INSTALL --preclean --no-multiarch --library=matter.buildbin-libdir matter_2.0.1.tar.gz' >>>>>>> * installing *source* package ‘matter’ ... ** using staged installation ** libs clang++ -arch arm64 -std=gnu++14 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c altrep.cpp -o altrep.o clang++ -arch arm64 -std=gnu++14 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c init.cpp -o init.o clang++ -arch arm64 -std=gnu++14 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c matterExports.cpp -o matterExports.o clang++ -arch arm64 -std=gnu++14 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/Library/Frameworks/R.framework/Resources/lib -L/opt/R/arm64/lib -o matter.so altrep.o init.o matterExports.o -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation ld: warning: -undefined dynamic_lookup may not work with chained fixups installing to /Volumes/External/bbs-3.16-bioc-m1/meat/matter.buildbin-libdir/00LOCK-matter/00new/matter/libs ** R ** inst ** byte-compile and prepare package for lazy loading Creating a new generic function for ‘apply’ in package ‘matter’ Creating a new generic function for ‘scale’ in package ‘matter’ ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (matter) >>>>>>> >>>>>>> FIXING LINKS FOR matter.buildbin-libdir/matter/libs/matter.so >>>>>>> install_name_tool -change "/opt/R/arm64/lib/libgcc_s.1.1.dylib" "/Library/Frameworks/R.framework/Versions/4.2-arm64/Resources/lib/libgcc_s.1.1.dylib" "matter.buildbin-libdir/matter/libs/matter.so" install_name_tool -change "/opt/R/arm64/lib/libgfortran.5.dylib" "/Library/Frameworks/R.framework/Versions/4.2-arm64/Resources/lib/libgfortran.5.dylib" "matter.buildbin-libdir/matter/libs/matter.so" install_name_tool -change "/opt/R/arm64/lib/libquadmath.0.dylib" "/Library/Frameworks/R.framework/Versions/4.2-arm64/Resources/lib/libquadmath.0.dylib" "matter.buildbin-libdir/matter/libs/matter.so"