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This page was generated on 2023-04-19 11:01:53 -0400 (Wed, 19 Apr 2023).

HostnameOSArch (*)R versionInstalled pkgs
kjohnsonmacOS 13.0 Venturaarm644.2.2 (2022-10-31) -- "Innocent and Trusting" 4256
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INSTALL results for biovizBase on kjohnson


To the developers/maintainers of the biovizBase package:
Make sure to use the following settings in order to reproduce any error or warning you see on this page.

raw results

Package 204/2183HostnameOS / ArchINSTALLBUILDBUILD BIN
biovizBase 1.46.0  (landing page)
Michael Lawrence
Snapshot Date: 2023-04-12 13:00:02 -0400 (Wed, 12 Apr 2023)
git_url: https://git.bioconductor.org/packages/biovizBase
git_branch: RELEASE_3_16
git_last_commit: a47060c
git_last_commit_date: 2022-11-01 11:06:19 -0400 (Tue, 01 Nov 2022)
kjohnsonmacOS 13.0 Ventura / arm64  OK    OK    OK  UNNEEDED, same version is already published

Summary

Package: biovizBase
Version: 1.46.0
Command: /Library/Frameworks/R.framework/Resources/bin/R CMD INSTALL biovizBase
StartedAt: 2023-04-16 17:03:36 -0400 (Sun, 16 Apr 2023)
EndedAt: 2023-04-16 17:04:58 -0400 (Sun, 16 Apr 2023)
EllapsedTime: 81.3 seconds
RetCode: 0
Status:   OK  

Command output

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###
### Running command:
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###   /Library/Frameworks/R.framework/Resources/bin/R CMD INSTALL biovizBase
###
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* installing to library ‘/Library/Frameworks/R.framework/Versions/4.2-arm64/Resources/library’
* installing *source* package ‘biovizBase’ ...
** using staged installation
** libs
clang -arch arm64 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG   -I/opt/R/arm64/include   -fPIC  -falign-functions=64 -Wall -g -O2  -c R_init_biovizBase.c -o R_init_biovizBase.o
clang -arch arm64 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG   -I/opt/R/arm64/include   -fPIC  -falign-functions=64 -Wall -g -O2  -c bin_offsets.c -o bin_offsets.o
bin_offsets.c:57:15: warning: passing 'Rbyte *' (aka 'unsigned char *') to parameter of type 'const char *' converts between pointers to integer types where one is of the unique plain 'char' type and the other is not [-Wpointer-sign]
  if (strncmp(b, "BAI\1", 4))
              ^
/Library/Developer/CommandLineTools/SDKs/MacOSX.sdk/usr/include/string.h:84:26: note: passing argument to parameter '__s1' here
int      strncmp(const char *__s1, const char *__s2, size_t __n);
                             ^
1 warning generated.
clang -arch arm64 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/Library/Frameworks/R.framework/Resources/lib -L/opt/R/arm64/lib -o biovizBase.so R_init_biovizBase.o bin_offsets.o -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation
ld: warning: -undefined dynamic_lookup may not work with chained fixups
installing to /Library/Frameworks/R.framework/Versions/4.2-arm64/Resources/library/00LOCK-biovizBase/00new/biovizBase/libs
** R
** data
*** moving datasets to lazyload DB
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (biovizBase)