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This page was generated on 2023-04-19 11:01:53 -0400 (Wed, 19 Apr 2023).

HostnameOSArch (*)R versionInstalled pkgs
kjohnsonmacOS 13.0 Venturaarm644.2.2 (2022-10-31) -- "Innocent and Trusting" 4256
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INSTALL results for CoGAPS on kjohnson


To the developers/maintainers of the CoGAPS package:
Make sure to use the following settings in order to reproduce any error or warning you see on this page.

raw results

Package 380/2183HostnameOS / ArchINSTALLBUILDBUILD BIN
CoGAPS 3.18.0  (landing page)
Elana J. Fertig
Snapshot Date: 2023-04-12 13:00:02 -0400 (Wed, 12 Apr 2023)
git_url: https://git.bioconductor.org/packages/CoGAPS
git_branch: RELEASE_3_16
git_last_commit: 659a6a2
git_last_commit_date: 2022-11-01 11:05:12 -0400 (Tue, 01 Nov 2022)
kjohnsonmacOS 13.0 Ventura / arm64  ERROR    ERROR  skipped

Summary

Package: CoGAPS
Version: 3.18.0
Command: /Library/Frameworks/R.framework/Resources/bin/R CMD INSTALL CoGAPS
StartedAt: 2023-04-16 15:10:33 -0400 (Sun, 16 Apr 2023)
EndedAt: 2023-04-16 15:10:44 -0400 (Sun, 16 Apr 2023)
EllapsedTime: 10.3 seconds
RetCode: 1
Status:   ERROR  

Command output

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### Running command:
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###   /Library/Frameworks/R.framework/Resources/bin/R CMD INSTALL CoGAPS
###
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* installing to library ‘/Library/Frameworks/R.framework/Versions/4.2-arm64/Resources/library’
* installing *source* package ‘CoGAPS’ ...
** using staged installation
checking whether the C++ compiler works... yes
checking for C++ compiler default output file name... a.out
checking for suffix of executables... 
checking whether we are cross compiling... no
checking for suffix of object files... o
checking whether we are using the GNU C++ compiler... yes
checking whether clang++ -arch arm64 -std=gnu++14 accepts -g... yes
checking how to run the C++ preprocessor... clang++ -arch arm64 -std=gnu++14 -E
checking whether we are using the GNU C++ compiler... (cached) yes
checking whether clang++ -arch arm64 -std=gnu++14 accepts -g... (cached) yes
./configure: line 2752: AX_COMPILER_VENDOR: command not found
./configure: line 2753: AX_COMPILER_VERSION: command not found
./configure: line 2764: AX_OPENMP: command not found
building on  compiler version 
Using AVX instructions if available
configure: creating ./config.status
config.status: creating src/Makevars
** libs
clang++ -arch arm64 -std=gnu++14 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -DBOOST_MATH_PROMOTE_DOUBLE_POLICY=0 -DGAPS_DISABLE_CHECKPOINTS -D__GAPS_R_BUILD__ -Iinclude -I'/Library/Frameworks/R.framework/Versions/4.2-arm64/Resources/library/Rcpp/include' -I'/Library/Frameworks/R.framework/Versions/4.2-arm64/Resources/library/BH/include' -I/opt/R/arm64/include  -march=native  -fPIC  -falign-functions=64 -Wall -g -O2  -c Cogaps.cpp -o Cogaps.o
clang: error: the clang compiler does not support '-march=native'
make: *** [Cogaps.o] Error 1
ERROR: compilation failed for package ‘CoGAPS’
* removing ‘/Library/Frameworks/R.framework/Versions/4.2-arm64/Resources/library/CoGAPS’