Back to Multiple platform build/check report for BioC 3.16
[A]BCDEFGHIJKLMNOPQRSTUVWXYZ

This page was generated on 2022-07-11 11:06:38 -0400 (Mon, 11 Jul 2022).

HostnameOSArch (*)R versionInstalled pkgs
nebbiolo2Linux (Ubuntu 20.04.4 LTS)x86_644.2.1 (2022-06-23) -- "Funny-Looking Kid" 4148
lconwaymacOS 12.2.1 Montereyx86_644.2.0 Patched (2022-05-29 r82424) -- "Vigorous Calisthenics" 4168
kjohnsonmacOS 12.4 Montereyarm644.2.1 (2022-06-23) -- "Funny-Looking Kid" 3545
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

BUILD results for AnnotationDbi on kjohnson


To the developers/maintainers of the AnnotationDbi package:
- Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/AnnotationDbi.git to
reflect on this report. See How and When does the builder pull? When will my changes propagate? for more information.
- Make sure to use the following settings in order to reproduce any error or warning you see on this page.

raw results

Package 56/2130HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
AnnotationDbi 1.59.1  (landing page)
Bioconductor Package Maintainer
Snapshot Date: 2022-07-10 14:00:02 -0400 (Sun, 10 Jul 2022)
git_url: https://git.bioconductor.org/packages/AnnotationDbi
git_branch: master
git_last_commit: b95ea14
git_last_commit_date: 2022-05-19 12:16:06 -0400 (Thu, 19 May 2022)
nebbiolo2Linux (Ubuntu 20.04.4 LTS) / x86_64  OK    OK    OK  UNNEEDED, same version is already published
lconwaymacOS 12.2.1 Monterey / x86_64  OK    OK    OK    OK  UNNEEDED, same version is already published
kjohnsonmacOS 12.4 Monterey / arm64  OK    ERROR  skippedskipped

Summary

Package: AnnotationDbi
Version: 1.59.1
Command: /Library/Frameworks/R.framework/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data AnnotationDbi
StartedAt: 2022-07-10 20:22:40 -0400 (Sun, 10 Jul 2022)
EndedAt: 2022-07-10 20:23:24 -0400 (Sun, 10 Jul 2022)
EllapsedTime: 44.2 seconds
RetCode: 1
Status:   ERROR  
PackageFile: None
PackageFileSize: NA

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   /Library/Frameworks/R.framework/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data AnnotationDbi
###
##############################################################################
##############################################################################


* checking for file ‘AnnotationDbi/DESCRIPTION’ ... OK
* preparing ‘AnnotationDbi’:
* checking DESCRIPTION meta-information ... OK
* installing the package to build vignettes
* creating vignettes ... ERROR
--- re-building ‘AnnotationDbi.Rnw’ using knitr
--- finished re-building ‘AnnotationDbi.Rnw’

--- re-building ‘IntroToAnnotationPackages.Rnw’ using knitr
Quitting from lines 327-336 (IntroToAnnotationPackages.Rnw) 
Error: processing vignette 'IntroToAnnotationPackages.Rnw' failed with diagnostics:
there is no package called 'TxDb.Hsapiens.UCSC.hg19.knownGene'
--- failed re-building ‘IntroToAnnotationPackages.Rnw’

SUMMARY: processing the following file failed:
  ‘IntroToAnnotationPackages.Rnw’

Error: Vignette re-building failed.
Execution halted