Back to Multiple platform build/check report for BioC 3.16 |
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This page was generated on 2022-06-03 11:06:05 -0400 (Fri, 03 Jun 2022).
Hostname | OS | Arch (*) | R version | Installed pkgs |
---|---|---|---|---|
nebbiolo2 | Linux (Ubuntu 20.04.4 LTS) | x86_64 | 4.2.0 RC (2022-04-21 r82226) -- "Vigorous Calisthenics" | 4364 |
palomino4 | Windows Server 2022 Datacenter | x64 | 4.2.0 Patched (2022-04-24 r82246 ucrt) -- "Vigorous Calisthenics" | 4168 |
lconway | macOS 12.2.1 Monterey | x86_64 | 4.2.0 Patched (2022-04-24 r82246) -- "Vigorous Calisthenics" | 4184 |
Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X |
To the developers/maintainers of the ASpediaFI package: - Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/ASpediaFI.git to reflect on this report. See How and When does the builder pull? When will my changes propagate? for more information. - Make sure to use the following settings in order to reproduce any error or warning you see on this page. |
Package 86/2116 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
ASpediaFI 1.11.0 (landing page) Doyeong Yu
| nebbiolo2 | Linux (Ubuntu 20.04.4 LTS) / x86_64 | OK | OK | OK | ![]() | ||||||||
palomino4 | Windows Server 2022 Datacenter / x64 | OK | OK | OK | OK | ![]() | ||||||||
lconway | macOS 12.2.1 Monterey / x86_64 | OK | OK | OK | OK | ![]() | ||||||||
Package: ASpediaFI |
Version: 1.11.0 |
Command: F:\biocbuild\bbs-3.16-bioc\R\bin\R.exe CMD check --force-multiarch --install=check:ASpediaFI.install-out.txt --library=F:\biocbuild\bbs-3.16-bioc\R\library --no-vignettes --timings ASpediaFI_1.11.0.tar.gz |
StartedAt: 2022-06-02 22:29:51 -0400 (Thu, 02 Jun 2022) |
EndedAt: 2022-06-02 22:35:49 -0400 (Thu, 02 Jun 2022) |
EllapsedTime: 358.6 seconds |
RetCode: 0 |
Status: OK |
CheckDir: ASpediaFI.Rcheck |
Warnings: 0 |
############################################################################## ############################################################################## ### ### Running command: ### ### F:\biocbuild\bbs-3.16-bioc\R\bin\R.exe CMD check --force-multiarch --install=check:ASpediaFI.install-out.txt --library=F:\biocbuild\bbs-3.16-bioc\R\library --no-vignettes --timings ASpediaFI_1.11.0.tar.gz ### ############################################################################## ############################################################################## * using log directory 'F:/biocbuild/bbs-3.16-bioc/meat/ASpediaFI.Rcheck' * using R version 4.2.0 Patched (2022-04-24 r82246 ucrt) * using platform: x86_64-w64-mingw32 (64-bit) * using session charset: UTF-8 * using option '--no-vignettes' * checking for file 'ASpediaFI/DESCRIPTION' ... OK * checking extension type ... Package * this is package 'ASpediaFI' version '1.11.0' * package encoding: UTF-8 * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking whether package 'ASpediaFI' can be installed ... OK * checking installed package size ... OK * checking package directory ... OK * checking 'build' directory ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking R files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... OK * checking whether the package can be loaded with stated dependencies ... OK * checking whether the package can be unloaded cleanly ... OK * checking whether the namespace can be loaded with stated dependencies ... OK * checking whether the namespace can be unloaded cleanly ... OK * checking dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... OK * checking Rd files ... OK * checking Rd metadata ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking contents of 'data' directory ... OK * checking data for non-ASCII characters ... OK * checking data for ASCII and uncompressed saves ... OK * checking R/sysdata.rda ... OK * checking sizes of PDF files under 'inst/doc' ... OK * checking files in 'vignettes' ... OK * checking examples ... OK Examples with CPU (user + system) or elapsed time > 5s user system elapsed annotateASevents 36.19 0.53 36.72 * checking for unstated dependencies in vignettes ... OK * checking package vignettes in 'inst/doc' ... OK * checking running R code from vignettes ... SKIPPED * checking re-building of vignette outputs ... SKIPPED * checking PDF version of manual ... OK * DONE Status: OK
ASpediaFI.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### C:\cygwin\bin\curl.exe -O http://155.52.207.166/BBS/3.16/bioc/src/contrib/ASpediaFI_1.11.0.tar.gz && rm -rf ASpediaFI.buildbin-libdir && mkdir ASpediaFI.buildbin-libdir && F:\biocbuild\bbs-3.16-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=ASpediaFI.buildbin-libdir ASpediaFI_1.11.0.tar.gz && F:\biocbuild\bbs-3.16-bioc\R\bin\R.exe CMD INSTALL ASpediaFI_1.11.0.zip && rm ASpediaFI_1.11.0.tar.gz ASpediaFI_1.11.0.zip ### ############################################################################## ############################################################################## % Total % Received % Xferd Average Speed Time Time Time Current Dload Upload Total Spent Left Speed 0 0 0 0 0 0 0 0 --:--:-- --:--:-- --:--:-- 0 100 2080k 100 2080k 0 0 8739k 0 --:--:-- --:--:-- --:--:-- 8777k only one architecture so ignoring '--merge-multiarch' * installing *source* package 'ASpediaFI' ... ** using staged installation ** R ** data ** inst ** byte-compile and prepare package for lazy loading Creating a new generic function for 'as.table' in package 'ASpediaFI' ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * MD5 sums packaged installation of 'ASpediaFI' as ASpediaFI_1.11.0.zip * DONE (ASpediaFI) * installing to library 'F:/biocbuild/bbs-3.16-bioc/R/library' package 'ASpediaFI' successfully unpacked and MD5 sums checked
ASpediaFI.Rcheck/ASpediaFI-Ex.timings
name | user | system | elapsed | |
ASpediaFI-accessor | 0.09 | 0.01 | 0.11 | |
ASpediaFI-class | 0.03 | 0.00 | 0.03 | |
GSE114922.fpkm | 0.03 | 0.00 | 0.03 | |
GSE114922.psi | 0.06 | 0.00 | 0.06 | |
analyzeFI | 0.2 | 0.0 | 0.2 | |
annotateASevents | 36.19 | 0.53 | 36.72 | |
exportNetwork | 0.01 | 0.00 | 0.01 | |
quantifyPSI | 0.02 | 0.00 | 0.02 | |
visualize | 0 | 0 | 0 | |