Back to Build/check report for BioC 3.15 experimental data |
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This page was generated on 2022-02-17 08:36:53 -0500 (Thu, 17 Feb 2022).
Hostname | OS | Arch (*) | R version | Installed pkgs |
---|---|---|---|---|
nebbiolo2 | Linux (Ubuntu 20.04.4 LTS) | x86_64 | R Under development (unstable) (2022-01-05 r81451) -- "Unsuffered Consequences" | 1362 |
Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X |
To the developers/maintainers of the MEDIPSData package: Make sure to use the following settings in order to reproduce any error or warning you see on this page. |
Package 217/406 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | ||||||||
MEDIPSData 1.31.1 (landing page) Lukas Chavez
| nebbiolo2 | Linux (Ubuntu 20.04.4 LTS) / x86_64 | OK | OK | WARNINGS | ||||||||
Package: MEDIPSData |
Version: 1.31.1 |
Command: /home/biocbuild/bbs-3.15-data-experiment/R/bin/R CMD check --install=check:MEDIPSData.install-out.txt --library=/home/biocbuild/bbs-3.15-data-experiment/R/library --no-vignettes --timings MEDIPSData_1.31.1.tar.gz |
StartedAt: 2022-02-17 07:34:11 -0500 (Thu, 17 Feb 2022) |
EndedAt: 2022-02-17 07:34:51 -0500 (Thu, 17 Feb 2022) |
EllapsedTime: 40.3 seconds |
RetCode: 0 |
Status: WARNINGS |
CheckDir: MEDIPSData.Rcheck |
Warnings: 2 |
############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/bbs-3.15-data-experiment/R/bin/R CMD check --install=check:MEDIPSData.install-out.txt --library=/home/biocbuild/bbs-3.15-data-experiment/R/library --no-vignettes --timings MEDIPSData_1.31.1.tar.gz ### ############################################################################## ############################################################################## * using log directory ‘/home/biocbuild/bbs-3.15-data-experiment/meat/MEDIPSData.Rcheck’ * using R Under development (unstable) (2022-01-05 r81451) * using platform: x86_64-pc-linux-gnu (64-bit) * using session charset: UTF-8 * using option ‘--no-vignettes’ * checking for file ‘MEDIPSData/DESCRIPTION’ ... OK * checking extension type ... Package * this is package ‘MEDIPSData’ version ‘1.31.1’ * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking for sufficient/correct file permissions ... OK * checking whether package ‘MEDIPSData’ can be installed ... OK * checking installed package size ... NOTE installed size is 168.8Mb sub-directories of 1Mb or more: data 25.0Mb extdata 143.7Mb * checking package directory ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking whether the package can be loaded ... OK * checking whether the package can be loaded with stated dependencies ... OK * checking whether the package can be unloaded cleanly ... OK * checking whether the namespace can be loaded with stated dependencies ... OK * checking whether the namespace can be unloaded cleanly ... OK * checking Rd files ... OK * checking Rd metadata ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking contents of ‘data’ directory ... WARNING File ‘data/datalist’ contains malformed line(s): ‘’ * checking data for non-ASCII characters ... WARNING Error loading dataset 'CS': Error in .requirePackage(package) : unable to find required package 'MEDIPS' Error loading dataset 'DE_Input': Error in .requirePackage(package) : unable to find required package 'MEDIPS' Error loading dataset 'DE_MeDIP': Error in .requirePackage(package) : unable to find required package 'MEDIPS' Error loading dataset 'hESCs_Input': Error in .requirePackage(package) : unable to find required package 'MEDIPS' Error loading dataset 'hESCs_MeDIP': Error in .requirePackage(package) : unable to find required package 'MEDIPS' Error loading dataset 'qseaGLM': Error in .requirePackage(package) : unable to find required package 'qsea' Error loading dataset 'qseaSet': Error in .requirePackage(package) : unable to find required package 'qsea' The dataset(s) may use package(s) not declared in the DESCRIPTION file. * checking data for ASCII and uncompressed saves ... OK * checking examples ... OK * checking PDF version of manual ... OK * DONE Status: 2 WARNINGs, 1 NOTE See ‘/home/biocbuild/bbs-3.15-data-experiment/meat/MEDIPSData.Rcheck/00check.log’ for details.
MEDIPSData.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/bbs-3.15-data-experiment/R/bin/R CMD INSTALL MEDIPSData ### ############################################################################## ############################################################################## * installing to library ‘/home/biocbuild/bbs-3.15-data-experiment/R/library’ * installing *source* package ‘MEDIPSData’ ... ** using staged installation ** data ** inst ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (MEDIPSData)
MEDIPSData.Rcheck/MEDIPSData-Ex.timings
name | user | system | elapsed | |
CS | 0 | 0 | 0 | |
DE_Input | 0 | 0 | 0 | |
DE_MeDIP | 0.001 | 0.000 | 0.000 | |
NSCLC_dataset | 0.000 | 0.000 | 0.001 | |
annotation | 0 | 0 | 0 | |
hESCs_Input | 0.001 | 0.000 | 0.000 | |
hESCs_MeDIP | 0.000 | 0.000 | 0.001 | |
mart_gene | 0 | 0 | 0 | |
resultTable | 0 | 0 | 0 | |
samplesNSCLC | 0 | 0 | 0 | |
tcga_luad_lusc_450kmeth | 0 | 0 | 0 | |