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This page was generated on 2022-10-18 14:50:12 -0400 (Tue, 18 Oct 2022).

HostnameOSArch (*)R versionInstalled pkgs
nebbiolo1Linux (Ubuntu 20.04.5 LTS)x86_644.2.1 (2022-06-23) -- "Funny-Looking Kid" 4386
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

CHECK results for KEGGandMetacoreDzPathwaysGEO on nebbiolo1


To the developers/maintainers of the KEGGandMetacoreDzPathwaysGEO package:
Make sure to use the following settings in order to reproduce any error or warning you see on this page.

raw results

Package 194/410HostnameOS / ArchINSTALLBUILDCHECK
KEGGandMetacoreDzPathwaysGEO 1.16.0  (landing page)
Gaurav Bhatti
Snapshot Date: 2022-10-18 07:30:03 -0400 (Tue, 18 Oct 2022)
git_url: https://git.bioconductor.org/packages/KEGGandMetacoreDzPathwaysGEO
git_branch: RELEASE_3_15
git_last_commit: 0002276
git_last_commit_date: 2022-04-26 13:14:23 -0400 (Tue, 26 Apr 2022)
nebbiolo1Linux (Ubuntu 20.04.5 LTS) / x86_64  OK    OK    OK  UNNEEDED, same version is already published

Summary

Package: KEGGandMetacoreDzPathwaysGEO
Version: 1.16.0
Command: /home/biocbuild/bbs-3.15-bioc/R/bin/R CMD check --install=check:KEGGandMetacoreDzPathwaysGEO.install-out.txt --library=/home/biocbuild/bbs-3.15-bioc/R/library --no-vignettes --timings KEGGandMetacoreDzPathwaysGEO_1.16.0.tar.gz
StartedAt: 2022-10-18 11:27:32 -0400 (Tue, 18 Oct 2022)
EndedAt: 2022-10-18 11:28:16 -0400 (Tue, 18 Oct 2022)
EllapsedTime: 44.0 seconds
RetCode: 0
Status:   OK  
CheckDir: KEGGandMetacoreDzPathwaysGEO.Rcheck
Warnings: 0

Command output

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### Running command:
###
###   /home/biocbuild/bbs-3.15-bioc/R/bin/R CMD check --install=check:KEGGandMetacoreDzPathwaysGEO.install-out.txt --library=/home/biocbuild/bbs-3.15-bioc/R/library --no-vignettes --timings KEGGandMetacoreDzPathwaysGEO_1.16.0.tar.gz
###
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* using log directory ‘/home/biocbuild/bbs-3.15-data-experiment/meat/KEGGandMetacoreDzPathwaysGEO.Rcheck’
* using R version 4.2.1 (2022-06-23)
* using platform: x86_64-pc-linux-gnu (64-bit)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘KEGGandMetacoreDzPathwaysGEO/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘KEGGandMetacoreDzPathwaysGEO’ version ‘1.16.0’
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘KEGGandMetacoreDzPathwaysGEO’ can be installed ... OK
* checking installed package size ... NOTE
  installed size is 98.8Mb
  sub-directories of 1Mb or more:
    data  98.7Mb
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in ‘inst/doc’ ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE

Status: 1 NOTE
See
  ‘/home/biocbuild/bbs-3.15-data-experiment/meat/KEGGandMetacoreDzPathwaysGEO.Rcheck/00check.log’
for details.



Installation output

KEGGandMetacoreDzPathwaysGEO.Rcheck/00install.out

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###
### Running command:
###
###   /home/biocbuild/bbs-3.15-bioc/R/bin/R CMD INSTALL KEGGandMetacoreDzPathwaysGEO
###
##############################################################################
##############################################################################


* installing to library ‘/home/biocbuild/bbs-3.15-bioc/R/library’
* installing *source* package ‘KEGGandMetacoreDzPathwaysGEO’ ...
** using staged installation
** data
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (KEGGandMetacoreDzPathwaysGEO)

Tests output


Example timings

KEGGandMetacoreDzPathwaysGEO.Rcheck/KEGGandMetacoreDzPathwaysGEO-Ex.timings

nameusersystemelapsed
GSE11450.2880.0320.320
GSE119062.4700.0642.534
GSE14924_CD40.1780.0280.206
GSE14924_CD80.1800.0080.189
GSE167590.2480.0040.252
GSE194200.1730.0000.173
GSE201640.0520.0040.056
GSE227800.1450.0200.165
GSE238780.5840.0240.608
GSE24739_G00.3350.0080.343
GSE24739_G10.3190.0200.339
GSE301530.4220.0200.442
GSE326760.5430.0240.567
GSE38666_epithelia0.2270.0120.239
GSE38666_stroma0.1560.0040.160
GSE41830.1920.0040.196
GSE420570.7410.0160.757
GSE73050.5360.0120.549
KEGGandMetacoreDzPathwaysGEO-package0.4390.0280.467