Julian Flesch
| Snapshot Date: 2022-10-18 13:55:19 -0400 (Tue, 18 Oct 2022) |
| git_url: https://git.bioconductor.org/packages/waddR |
| git_branch: RELEASE_3_15 |
| git_last_commit: bdeb879 |
| git_last_commit_date: 2022-04-26 12:00:24 -0400 (Tue, 26 Apr 2022) |
| Back to Multiple platform build/check report for BioC 3.15 |
|
This page was generated on 2022-10-19 13:23:55 -0400 (Wed, 19 Oct 2022).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| nebbiolo1 | Linux (Ubuntu 20.04.5 LTS) | x86_64 | 4.2.1 (2022-06-23) -- "Funny-Looking Kid" | 4386 |
| palomino3 | Windows Server 2022 Datacenter | x64 | 4.2.1 (2022-06-23 ucrt) -- "Funny-Looking Kid" | 4138 |
| merida1 | macOS 10.14.6 Mojave | x86_64 | 4.2.1 (2022-06-23) -- "Funny-Looking Kid" | 4205 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
|
To the developers/maintainers of the waddR package: - Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/waddR.git to reflect on this report. See How and When does the builder pull? When will my changes propagate? for more information. - Make sure to use the following settings in order to reproduce any error or warning you see on this page. |
| Package 2114/2140 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| waddR 1.10.0 (landing page) Julian Flesch
| nebbiolo1 | Linux (Ubuntu 20.04.5 LTS) / x86_64 | OK | OK | OK | | ||||||||
| palomino3 | Windows Server 2022 Datacenter / x64 | OK | OK | ERROR | OK | |||||||||
| merida1 | macOS 10.14.6 Mojave / x86_64 | OK | OK | OK | OK | | ||||||||
| Package: waddR |
| Version: 1.10.0 |
| Command: rm -rf waddR.buildbin-libdir && mkdir waddR.buildbin-libdir && /Users/biocbuild/BBS/utils/build-universal.sh waddR_1.10.0.tar.gz /Library/Frameworks/R.framework/Resources/bin/R waddR.buildbin-libdir |
| StartedAt: 2022-10-19 11:23:14 -0400 (Wed, 19 Oct 2022) |
| EndedAt: 2022-10-19 11:24:41 -0400 (Wed, 19 Oct 2022) |
| EllapsedTime: 87.0 seconds |
| RetCode: 0 |
| Status: OK |
| PackageFile: waddR_1.10.0.tgz |
| PackageFileSize: 216.7 KiB |
##############################################################################
##############################################################################
###
### Running command:
###
### rm -rf waddR.buildbin-libdir && mkdir waddR.buildbin-libdir && /Users/biocbuild/BBS/utils/build-universal.sh waddR_1.10.0.tar.gz /Library/Frameworks/R.framework/Resources/bin/R waddR.buildbin-libdir
###
##############################################################################
##############################################################################
>>>>>>>
>>>>>>> INSTALLATION WITH 'R CMD INSTALL --preclean --no-multiarch --library=waddR.buildbin-libdir waddR_1.10.0.tar.gz'
>>>>>>>
* installing *source* package ‘waddR’ ...
** using staged installation
** libs
clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Library/Frameworks/R.framework/Versions/4.2/Resources/library/Rcpp/include' -I'/Library/Frameworks/R.framework/Versions/4.2/Resources/library/RcppArmadillo/include' -I/usr/local/include -fPIC -Wall -g -O2 -c RcppExports.cpp -o RcppExports.o
clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Library/Frameworks/R.framework/Versions/4.2/Resources/library/Rcpp/include' -I'/Library/Frameworks/R.framework/Versions/4.2/Resources/library/RcppArmadillo/include' -I/usr/local/include -fPIC -Wall -g -O2 -c wasserstein.cpp -o wasserstein.o
wasserstein.cpp:386:27: warning: unused variable 'out_it_end' [-Wunused-variable]
vector<double>::iterator out_it_end = out.end();
^
wasserstein.cpp:501:4: warning: unused variable 'max_x' [-Wunused-variable]
T max_x = x_sorted[n-1];
^
wasserstein.cpp:1162:8: note: in instantiation of function template specialization 'quantile<double>' requested here
res = quantile(x, q, type);
^
2 warnings generated.
clang++ -mmacosx-version-min=10.13 -std=gnu++11 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/Library/Frameworks/R.framework/Resources/lib -L/usr/local/lib -o waddR.so RcppExports.o wasserstein.o -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation
installing to /Users/biocbuild/bbs-3.15-bioc/meat/waddR.buildbin-libdir/00LOCK-waddR/00new/waddR/libs
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (waddR)
>>>>>>>
>>>>>>> FIXING LINKS FOR waddR.buildbin-libdir/waddR/libs/waddR.so
>>>>>>>
install_name_tool -change "/usr/local/lib/libgcc_s.1.dylib" "/Library/Frameworks/R.framework/Versions/4.2/Resources/lib/libgcc_s.1.dylib" "waddR.buildbin-libdir/waddR/libs/waddR.so"
install_name_tool -change "/usr/local/lib/libgfortran.5.dylib" "/Library/Frameworks/R.framework/Versions/4.2/Resources/lib/libgfortran.5.dylib" "waddR.buildbin-libdir/waddR/libs/waddR.so"
install_name_tool -change "/usr/local/lib/libquadmath.0.dylib" "/Library/Frameworks/R.framework/Versions/4.2/Resources/lib/libquadmath.0.dylib" "waddR.buildbin-libdir/waddR/libs/waddR.so"