Back to Multiple platform build/check report for BioC 3.15 |
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This page was generated on 2022-03-18 11:08:45 -0400 (Fri, 18 Mar 2022).
Hostname | OS | Arch (*) | R version | Installed pkgs |
---|---|---|---|---|
nebbiolo1 | Linux (Ubuntu 20.04.4 LTS) | x86_64 | R Under development (unstable) (2022-02-17 r81757) -- "Unsuffered Consequences" | 4334 |
riesling1 | Windows Server 2019 Standard | x64 | R Under development (unstable) (2021-11-21 r81221) -- "Unsuffered Consequences" | 4097 |
palomino3 | Windows Server 2022 Datacenter | x64 | R Under development (unstable) (2022-02-17 r81757 ucrt) -- "Unsuffered Consequences" | 4083 |
merida1 | macOS 10.14.6 Mojave | x86_64 | R Under development (unstable) (2022-03-02 r81842) -- "Unsuffered Consequences" | 4134 |
Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X |
To the developers/maintainers of the sparseMatrixStats package: - Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/sparseMatrixStats.git to reflect on this report. See How and When does the builder pull? When will my changes propagate? here for more information. - Make sure to use the following settings in order to reproduce any error or warning you see on this page. |
Package 1848/2090 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
sparseMatrixStats 1.7.0 (landing page) Constantin Ahlmann-Eltze
| nebbiolo1 | Linux (Ubuntu 20.04.4 LTS) / x86_64 | OK | OK | OK | |||||||||
riesling1 | Windows Server 2019 Standard / x64 | OK | OK | OK | OK | |||||||||
palomino3 | Windows Server 2022 Datacenter / x64 | OK | OK | OK | OK | |||||||||
merida1 | macOS 10.14.6 Mojave / x86_64 | OK | OK | OK | OK | |||||||||
Package: sparseMatrixStats |
Version: 1.7.0 |
Command: rm -rf sparseMatrixStats.buildbin-libdir && mkdir sparseMatrixStats.buildbin-libdir && D:\biocbuild\bbs-3.15-bioc\R\bin\R.exe CMD INSTALL --build --library=sparseMatrixStats.buildbin-libdir sparseMatrixStats_1.7.0.tar.gz |
StartedAt: 2022-03-17 21:41:37 -0400 (Thu, 17 Mar 2022) |
EndedAt: 2022-03-17 21:42:57 -0400 (Thu, 17 Mar 2022) |
EllapsedTime: 79.8 seconds |
RetCode: 0 |
Status: OK |
PackageFile: sparseMatrixStats_1.7.0.zip |
PackageFileSize: 1.429 MiB |
############################################################################## ############################################################################## ### ### Running command: ### ### rm -rf sparseMatrixStats.buildbin-libdir && mkdir sparseMatrixStats.buildbin-libdir && D:\biocbuild\bbs-3.15-bioc\R\bin\R.exe CMD INSTALL --build --library=sparseMatrixStats.buildbin-libdir sparseMatrixStats_1.7.0.tar.gz ### ############################################################################## ############################################################################## * installing *source* package 'sparseMatrixStats' ... ** using staged installation ** libs "C:/rtools40/mingw64/bin/"g++ -std=gnu++11 -I"D:/biocbuild/bbs-3.15-bioc/R/include" -DNDEBUG -I'D:/biocbuild/bbs-3.15-bioc/R/library/Rcpp/include' -I"C:/extsoft/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -fno-reorder-blocks-and-partition -c RcppExports.cpp -o RcppExports.o "C:/rtools40/mingw64/bin/"g++ -std=gnu++11 -I"D:/biocbuild/bbs-3.15-bioc/R/include" -DNDEBUG -I'D:/biocbuild/bbs-3.15-bioc/R/library/Rcpp/include' -I"C:/extsoft/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -fno-reorder-blocks-and-partition -c SparseMatrixView.cpp -o SparseMatrixView.o "C:/rtools40/mingw64/bin/"g++ -std=gnu++11 -I"D:/biocbuild/bbs-3.15-bioc/R/include" -DNDEBUG -I'D:/biocbuild/bbs-3.15-bioc/R/library/Rcpp/include' -I"C:/extsoft/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -fno-reorder-blocks-and-partition -c methods.cpp -o methods.o In file included from methods.cpp:6: quantile.h: In instantiation of 'double quantile_sparse_impl(T, int, double) [with T = VectorSubsetView<14>]': quantile.h:85:85: required from here quantile.h:35:20: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<double>::size_type' {aka 'long long unsigned int'} [-Wsign-compare] for(int i = 0; i < sorted_values.size() + number_of_zeros; i++){ ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ methods.cpp: In instantiation of 'double colOrderStats::operator()(V&, R&, int) const [with V = SkipNAVectorSubsetView<14>; R = SkipNAVectorSubsetView<13>]': methods.cpp:25:18: required from 'Rcpp::NumericVector reduce_matrix_double(Rcpp::S4, bool, Functor) [with Functor = colOrderStats; Rcpp::NumericVector = Rcpp::Vector<14, Rcpp::PreserveStorage>; Rcpp::S4 = Rcpp::S4_Impl<Rcpp::PreserveStorage>]' methods.cpp:510:73: required from here methods.cpp:475:22: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<double>::size_type' {aka 'long long unsigned int'} [-Wsign-compare] for(int i = 0; i < sorted_values.size() + number_of_zeros; i++){ ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ methods.cpp: In instantiation of 'double colOrderStats::operator()(V&, R&, int) const [with V = VectorSubsetView<14>; R = VectorSubsetView<13>]': methods.cpp:30:18: required from 'Rcpp::NumericVector reduce_matrix_double(Rcpp::S4, bool, Functor) [with Functor = colOrderStats; Rcpp::NumericVector = Rcpp::Vector<14, Rcpp::PreserveStorage>; Rcpp::S4 = Rcpp::S4_Impl<Rcpp::PreserveStorage>]' methods.cpp:510:73: required from here methods.cpp:475:22: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<double>::size_type' {aka 'long long unsigned int'} [-Wsign-compare] In file included from methods.cpp:6: quantile.h: In instantiation of 'double quantile_sparse_impl(T, int, double) [with T = SkipNAVectorSubsetView<14>]': methods.cpp:269:32: required from 'double colMedians::operator()(V&, R&, int) const [with V = SkipNAVectorSubsetView<14>; R = SkipNAVectorSubsetView<13>]' methods.cpp:25:18: required from 'Rcpp::NumericVector reduce_matrix_double(Rcpp::S4, bool, Functor) [with Functor = colMedians; Rcpp::NumericVector = Rcpp::Vector<14, Rcpp::PreserveStorage>; Rcpp::S4 = Rcpp::S4_Impl<Rcpp::PreserveStorage>]' methods.cpp:277:63: required from here quantile.h:35:20: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<double>::size_type' {aka 'long long unsigned int'} [-Wsign-compare] for(int i = 0; i < sorted_values.size() + number_of_zeros; i++){ ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ "C:/rtools40/mingw64/bin/"g++ -std=gnu++11 -I"D:/biocbuild/bbs-3.15-bioc/R/include" -DNDEBUG -I'D:/biocbuild/bbs-3.15-bioc/R/library/Rcpp/include' -I"C:/extsoft/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -fno-reorder-blocks-and-partition -c row_methods.cpp -o row_methods.o C:/rtools40/mingw64/bin/g++ -shared -s -static-libgcc -o sparseMatrixStats.dll tmp.def RcppExports.o SparseMatrixView.o methods.o row_methods.o -LC:/extsoft/lib/x64 -LC:/extsoft/lib -LD:/biocbuild/bbs-3.15-bioc/R/bin/x64 -lR installing to D:/biocbuild/bbs-3.15-bioc/meat/sparseMatrixStats.buildbin-libdir/00LOCK-sparseMatrixStats/00new/sparseMatrixStats/libs/x64 ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices converting help for package 'sparseMatrixStats' finding HTML links ... done colAlls-xgCMatrix-method html colAnyNAs-xgCMatrix-method html colAnys-xgCMatrix-method html colAvgsPerRowSet-xgCMatrix-method html colCollapse-xgCMatrix-method html colCounts-xgCMatrix-method html colCummaxs-dgCMatrix-method html colCummins-dgCMatrix-method html colCumprods-xgCMatrix-method html colCumsums-xgCMatrix-method html colDiffs-dgCMatrix-method html colIQRDiffs-dgCMatrix-method html colIQRs-xgCMatrix-method html colLogSumExps-xgCMatrix-method html colMadDiffs-dgCMatrix-method html colMads-dgCMatrix-method html colMaxs-dgCMatrix-method html colMeans2-xgCMatrix-method html colMedians-dgCMatrix-method html colMins-dgCMatrix-method html colOrderStats-dgCMatrix-method html colProds-xgCMatrix-method html colQuantiles-xgCMatrix-method html colRanges-dgCMatrix-method html colRanks-dgCMatrix-method html colSdDiffs-dgCMatrix-method html colSds-xgCMatrix-method html colSums2-xgCMatrix-method html colTabulates-xgCMatrix-method html colVarDiffs-dgCMatrix-method html colVars-xgCMatrix-method html colWeightedMads-dgCMatrix-method html colWeightedMeans-xgCMatrix-method html colWeightedMedians-dgCMatrix-method html colWeightedSds-xgCMatrix-method html colWeightedVars-xgCMatrix-method html xgCMatrix-class html *** copying figures ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * MD5 sums packaged installation of 'sparseMatrixStats' as sparseMatrixStats_1.7.0.zip * DONE (sparseMatrixStats)